LOC110520266 (phs1)


Basic Information

Item Value
gene id LOC110520266
gene name phs1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 56668133 ~ 56680567 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597449.2
TATTGCGCAGGCCCAGTTTACGCCTTGCATTTCCTGATTTTGTGGACTGATTAGAAGAGTAGCTCTGCCTGATTGCTATTTTCTAAGCATCTGGCACACTATTCGGGCAGTGCCAAGTGGGGTTCAGTCATGTCAGCACCTGCTATGGGGACCACGAAGACGGCTCACAGTGATGTGGCCCCGAAGAAAAAGAGGGGACCGGGTGCCCTGGCTACGGCGTATCTGGTTATATATAACGTGGTTATGACAGCTGGCTGGCTGGTCATTGCTGTGGGCCTGGTGCGGGCCTACCTTGTCAGAGGCAGCTACCACGGCCTGTACTTCTCTATAGAGAAGCCCCTGAAGTTTTTCCAGACCGGTGCGCTCTTAGAGATATTGCACTGTGCAGTGGGGATCGTTCCATCCTCTGTGGTTCTAACGGGGTTCCAGGTGTTGTCTCGGGTCTTCCTCACCTGGGCTGTGACACACAGCGTCCGAGAGGTCCAGAGTGAAGACAGTGTCCTGCTCTTCGTATCGGCCTGGACCATTACAGAGATCATCCGCTACTCCTTCTACACCTTCAGTCTGCTCAACCACCTGCCCTACCTCATCAAATGGGCACGGTACACATTCTTCCTAGTGCTGTATCCTATGGGAGTGACAGGTGAGCTGCTGACCATCTATGCAGCCCTTCCCTATGTGCAGAAGACAGGTCTCTACTCTGTCACTCTACCTAACAAGTACAACTTCTCCTTTGACTACTACACCTTCCTCATCCTCACTATGGTCTCCTACATTCCACTGTTTCCCCAGCTCTACTTCCACATGATGCGTCAGAGAAAGAAAGTCCTGGCCCACGTGGAAGAGTACAAAACAGAGTAAACACAGCAAACACACGGCAGACTGATCACATCATGCCACGGGGAGGAGTGGAAAAAGACGAGATAacctttaaaaaaagaaaaaacatgcCTGACCAATTAAATATGTCTGCTTGTTGAAATACCAAGAAACTCAACTCTTTTTCAGATCAAGAAAATAACATGGGGAATGGGGATGATCGATCTAACAATGGTTCTTGCTAATCAGTTGGTTCGGTTTTGGGCTGTTGCCTGGCTATTAAGATGCTCTTGTCATTTACAATATACCAACTGCTTTTCGTTTTCTTTGTCCGTAAATGCAGTTACCATGTTATCAAAATGCTACTTACTCAAAAACTGTTTTGTAAATGTGATGATGATCCAGTTCCGTTGCACTGGCCCCTTTGAGAGGCAGCAGAATGCTGTGCTGTTGCCTATGACTCTGGTCATAATGTGCTGAATGCACTGATACAATCAATGCCTTCTTCTCTCATAGTTCAGTAGAAGACAAAcactagaacccccccccccccccccccttctatccCTGGGTGCATCCCAACTggaagcctattccctatatagtactatttagggaatagtgtAATTTGGGATGCTACCATGCTTTGTGCTCTAATGAATAGTTGTCCTTTGTTAGGATGGATGGAGGGTTCCATATTTGTCTGACTCAACGGAGGACTATGCCTGTTTAAGTAATTTATTTCTGCGACTAGATTTTTCACCTGCAGAACTTCTGATCACATTCCATTTGGTGTAATAAAGCTTTTCTTTATTCTGTGCTTTACATAGTTTTGTTTTCCAATACTTATTTTCAAATACTCAACTAACTGCAGCAATTCAGTGCTTATTGTCATAAGATAGCTTTTTGCTTTTATGTTTTGGATTTTTTGTGTTGACAATATTTGTTAATAATTTGGACCATTTGGGTTTCTTTAGAATCATATTATGTTGATTGTGGGTTGGGTATTGATTTGTAAATCTTTGTTTGAAGTAGGGGTAGGCCTCCATGACCTAGAGTGGATAGTATGTCGATAAGCCAACCAGTTTTACAGTTACTTTGCTTTCTTGTGTATATTTTCTGAGGGAACTCATTTATTTACTCAAGCTTTAAACTTAAGGTGGTTCTCAAATTGTCATGGTGTGATGTTGGACCAAGACACTGGTGGACATTGCCTGGAAAACATGTTGAAGGGTTAACCACAAATGAGCCAATACTCACACTTTATTTATTGACTGTTTGTTCTGAACTACAGTAGGGTGCCAGGACATGCACTGTCAGACACTGGGCTCCCGAgtgatgcagcggtctaaggcactgcatctcagtgctagaggcgtcactactgacaccctggttcgaatccaggccgtGATTGACCCTATGggacatagggcggcgcacaattggcccagcgtcgtccaggtttggccggtgtagaccatcattgtaaataagaatttcttcttaactgacttgcctagttaattaaaggttacatttaaaaaataataatataaaaacaGGACGCTTGCATGGACACGAGTCCATTAGATTAGAGAGCTTGTAGTCCTGCATTTCCAATGACTTAAagaggcaatctgcagttgctacatttATTTTTGACTTATAAATTAAAGCTATATACATACAATAGGtatcttgaagaatataacttataaatgccttatgagcttagttcaactgttgtaccccatcagaacccaaaatataagcttgttttactccaatatttgttaaaaatagaaatataaacaaacactgtaaaCTCAAAacatcattttgatatcatggatgatcagtccttgtatccatagccctgtctatgaatttgaaagttgttacatttctccattcctcagctttttaccaaaacagttgTGGGGTGCCTGCTTTGTTAATGTTTCAACTGCGGGCTGGCTCTTTAAATCTAATAATGTAGAGAGTCAGGCGTTTGCGTGTGTGTGGTTCAGAGTTTTTGTCCACCTCTGACTCAGGAGAAGGTAACTGAGTACAATGTAAAACCTTAACGGTTATCAATGTGGATGCAAACAGTAACTGCACTGCATTAACACTGAAAACTCTAATAATTTGGTTTTAGTTTTTCCTAATAAATTGTTGTAGAACTAATGTGAAAGACAAACTAGATTTTGTGGACTTTAGCTTAATAGAAAGTGTtgaggttgtgttgtgtttgAGTAGTGATCACCCTTTTGCTTCCATGTCTGTGGGACTGCATCTCACTGCATGCAGTTTTAGACATTGATCAGGAGTTGCCTGACACTGGTATTGCCCTGATGCTCTTTGGGATGTGTAACAGTATGTTTATTATATCCTGAATTACGCTGTGAAAGGCCTACACTTTGCAAGGGATTCTTCCCCGACATAATGTTTGTTTTCCTCCCATTCTTAAAATGTCCTGCTGTCCTGATAGTTGAGTTCCTATGTTTCTGTTCTTTGTTGGCCTAACATGTAGTCTACACTCTTATGAAAGAGATGAGCAGCAAGGTGAACTGAAGATGCCTTTAGTACATCAACAACCACCCAACATCCCAACTAACTTGATTTAACATTGCCCTGGGCCTACGGTATCGGAGGATGTTTTGTAAGCATGGCCAGGATTGTTGGAAACTTCCTCTAGAGGCAGGAGTGCAACTCTGTAAAATTGCATGTAGGAGGAAATAAATGTCCATTCATCATTCGAAGTGGTGATACTTTGGTATAACTTACAGTATGGAAAAAGCATGCCACAATACTACTCTACACACTGGTTCTACTAAACAAAACTACAGTATGTTGAtctttttgataaaaaaaaatgttttgcatgggACCAGCAAACTTTGTATAAGTATGATTagttatataactatatatttacAATAAACTTAACATGGAA

Function

symbol description
phs1 Enables 3-hydroxyacyl-CoA dehydratase activity and enoyl-CoA hydratase activity. Involved in fatty acid elongation; sphingolipid biosynthetic process; and vacuolar transport. Located in fungal-type vacuole. Is integral component of endoplasmic reticulum membrane. Used to study cancer. Orthologous to human HACD1 (3-hydroxyacyl-CoA dehydratase 1) and HACD2 (3-hydroxyacyl-CoA dehydratase 2).

NR:

description
very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2-like

GO: NA

KEGG:

id description
K10703 HACD, PHS1, PAS2; very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597449.2 True 3778 mRNA 0.42 7 56668133 56680567

Neighbor

gene id symbol gene type direction distance location
rif1 LOC106586392 coding upstream 173289 56463388 ~ 56494844 (+)
tnfaip6 tsg6 coding upstream 205337 56454004 ~ 56462796 (+)
LOC110505355 NA coding upstream 227184 56439866 ~ 56440949 (+)
itgb5 LOC106586391 coding upstream 233207 56338028 ~ 56434926 (+)
LOC110520256 rbm44 coding upstream 332063 56329311 ~ 56336070 (+)
adcy5 LOC106586396 coding downstream 2497 56683064 ~ 56818530 (+)
sema5ba LOC106586418 coding downstream 236885 56917452 ~ 57105517 (+)
LOC110520274 NA coding downstream 541080 57220562 ~ 57230455 (+)
LOC110520279 LOC106586423 coding downstream 654470 57335037 ~ 57405623 (+)
LOC110520280 NA coding downstream 746858 57427425 ~ 57435274 (+)
G275953 NA non-coding upstream 39506 56628314 ~ 56628627 (+)
G275937 NA non-coding upstream 55503 56608773 ~ 56612630 (+)
G275933 LOC106586393 non-coding upstream 64208 56600813 ~ 56603925 (+)
G275903 NA non-coding upstream 115888 56550750 ~ 56552245 (+)
G275894 neb non-coding upstream 116410 56546797 ~ 56551723 (+)
G276151 NA non-coding downstream 265586 56946153 ~ 57027283 (+)
G276200 NA non-coding downstream 333768 57014335 ~ 57108879 (+)
G276240 NA non-coding downstream 460379 57140946 ~ 57145348 (+)
G275553 LOC107595854 other upstream 752000 55915329 ~ 55916133 (+)
G275542 LOC106586374 other upstream 767390 55900194 ~ 55900743 (+)
LOC110520231 dbr1 other upstream 1292607 55371759 ~ 55375526 (+)
G274592 NA other upstream 1793018 54874399 ~ 54875115 (+)
G273094 LOC106586310 other upstream 2826516 53841264 ~ 53841617 (+)
G277296 NA other downstream 584000 57264567 ~ 57264892 (+)
G277973 NA other downstream 1109167 57789734 ~ 57790332 (+)
G280315 NA other downstream 3372149 60052716 ~ 60054417 (+)
G281141 NA other downstream 3606821 60287388 ~ 60303967 (+)
G281591 LOC106586456 other downstream 4059672 60740239 ~ 60757350 (+)

Expression


Co-expression Network