LOC110520270 (LOC106586417)


Basic Information

Item Value
gene id LOC110520270
gene name LOC106586417
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 56867209 ~ 56917413 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974745.1
CATTTCCTAAGAAGCCTTGCGGGCTTCTCAAGAATCAGTGAAAAGCCCGATTGCGCGTGCGTATCCAAACGTGGCAACGGCATCATGGCTTCTTGGAACCGCTACGGGAGTGGGATGAGAGAGCTGAAAATGTACATATTCGTCTTGTTGGTGTGCCTGGCGTCTGTGCTGCAGGCGGCGGTGAAGGTCTCTCCTCTGATAGAGAAGGTCAGCGACCACAAGGACTTAAAGAAGCTCCTGAGGACCCGATCTAATGTCCTGGTGCTCTACACTAAGTCAGCTACCTCCGGGGACTCTAAGTTCAAGCTGCTGTCTGATGTGGCCCAGGTCGTCAAAGGACAGGGCACCATCGCCTGGGTCAACTGTGGGGATTCAGAGGGTCGTAAACTGTGTAAGAAAGTGAAGGTAGATCCCAGCTCAAAAAGTGGTGGCGCAGAACTCTTGCATTATAAAGATGGGACATTCCATACAGAATACAACAGGCCTGCTACATACAAGTCCATGGTGGCGTTTTTAAAAGACCCCACAGGAGCCCCTCTTTGGGAGGAGAACCCAGAAGCCAAAGATATTGTTCATGTAGAAACTGAAAAAGACTTCAGAAAGCttctgaagagggaggagaggccgATCCTCATGATGCTCTACGCCCCATGGTGTGGTGTCTGTAAGAGGATGCAGCCCGTATTTCAACAGGCAGCTACAGAGACCAAGGGTAAATTTGTGCTGGCTGGGATGAACGTGCACCCAGCTGAGTTTGATGGCCTCAAGCAGGAGTACAATGTCAAGGGCTACCCGACCTTCTGCTACTTTGAGAAGGGGAAGTTCCGGCACCACTATGAAAACTATGGGGGCACAGCCAAGGACATCACTGACTGGATGAAGAATCCCCAGCCCCCCCAGCCGAAGGTCCCAGAGGTCCAGTGGTCGGAGACTGACTCCCCTGTCTTTCACCTGACTGACGACTCCTTCGATGGGTTCCTGGCCGAACACCCGTCTGTCCTGATCATGTTCTACGCTCCATGGTGTGGCCATTGTAAAAAGATGAAGCCAGAGTATGAGGAAGCCGCTGAATACCTCAAAGACACAAATagccctGGGGTTCTGGCAGCTGTGGACACCACCATTCACAAGGCGGTGGGAGACCGCTTCAAGATCTCCGGCTTCCCCACCGTCAAGTACTTTGAGAAGGGAGAGGAAAAGTTCACTCTACCCCACCTTAGGAGCAAGGACAAGATCATTGAATATCTACAGAACCCCCAGGCGCCCCCTCCCCCAGAGCAGTCCTGGGAAGACAAGCCATCTGGTGTCAGCCATCTTGGAATGGAGGACTTCAGGGAAGttttgaagaagaagaagcatgCCCTCGTCATGTTCTACGCACCATGGTGTCCCCACTGTAAGAACGCTGTCCCTCACTTCACCACAGCAGCAGATCTCTTTAAAGAGGACCGCAAGATAGCCTATGTTGCCGTGGACTGCACTAAAGGACAGAACCAGGAGCTGTGCAAGCAGGAGAGTGTGGAAGGCTACCCCACCTTCAACTACTACAACTATGGCAAGTTTGCAGAAAAATACAACGGAGACCGAGGGgAGGCAGGATTTATAGGTTTCATGCGCAGCCTGCGGGGGCGGGACCAGGGCAAGAGGAAAGAGGAGCTTTAAGGCAgggtgtggagagggggaggagcctGTCGTTGCACTGTGACCGTGGCAGGGGCCTCTTAGCACTGACATCACGTGATGTCGTCATGACGTGTAATCACGGGGTGGAGACTTGAGAACCTCAGAGTTTCAGGGGAGATGCTATATGAACACGCCGGGTACCTAAATTGATGACATGTTGCGCAGCTGGGAGACTCATGGATTCTGTTCAGTCAGTCGTCCTGGtgagcccttcccagctagctagttcatGCGGGAAACAGCAGCATGGCGctagtttattttttttatttttacagaaaGTGATGTGTAATTTGATGGGCAAGGGAGAAATAACTTGTAGTATTGGTCACACTCTAGATGTTACCATGACATGCCTATTAGCTAACGTAATGACAAGCCTGTGTGAATGACCAGTGCAACGATGTTGTCGGTGCTTCCCACTGAGCAGCATTTGCTTCACCGGCAGCTGTATCATATGCTGTATCAGCTAATGTAGCCAATTTGTTCCATCCCACTTGAGTAGGATAGCAGCCTACACGAGAAATAACTTGTAATATTAGTAGCAGAAACTGGAACCAAAATAATTTAGGTCTGAACAGaacaattttttttcttcattttattccactgttccgaccagcaaaagTTCTGAACCGTTTCGAACCCCAAAAAAGTAGAGGTTTAtttcgtgtttttttttttttttttaattaacatTTAGCTCAACATTAAGTTACTTCACCAATGGATAAAGCAGTATGGTGCAGGCAAGCTATGTACATGCTTTGGACAAAGTGTAGTGTAGAGTGACATGCGACTGAATTTTTGCAGGTGAGGAGAGCGCTGGGCATTTTGttacggaggagtggcttctatgaAGGATCTCTGAAAGTCTCTGAACTTTAGAGTTGGCTTAACtaacgttggaccagagctagcccttgatcatgactctcagttccattacacatAATGCCAtctagagtttgagagctagaCCAGACCTAACTGGGAAGGATTTTcagcaggcagacactggaatcaTTTCTGAGTGACAGTGAGGGCAACACCACACGAGCCACAGTGTTGACTTCGCTCCCGCTTGCTGAGCACCTCTGTCCTACAGTCAGGAGAGGGAAATAACTAGATAGCTGTCATCTTGTTCTGATATCGGTTGCACATTTATTGTGGTGATGTTCACAGAAAATTTACAATTACGGCATTATCTACATTGTTACCCcgattttaaaaaacaaagaaTTACTTTGATAAAAACAGTGATTCTGAAATTCGGGAGACAAATTTCAAATTCTCGTTGAAGTTTCTAGACGCAAGCATAAACTAGTTAGCTGGGGAGGGCTCACTAGTACgactgactggactgactgaactGAATCCATTCGTCGACACTCAACTCTCGTTGCACCACATATGTCATACATTTTGGGCACCAGGCGTGTCCATATAGCCTCTCCCAGAACACAGCTATTTTTTTAGCGATCATGTTTGTAATGCCAGTGGCCactttctttttttacattttgatgGAATGataaaaaaatcaaaaacagaacCAGAAAGAAATCAGCAGGAAAATTTTGCCCAAATACCGTGACTGCATTTGTGGAAAGCTACACCTTACTGCAGGGtatcccaaactcagtcctcagTCCaaaccgagtttgggaaacactgccttaCTGTATCTATGCAATACCAGACTCTCCCTTCCCACTCCTGAGAATCTGTGATTTGGTGGGCTAGCTGAGCTGTGGTTGTGTTGCATGTGCCACCTACAGCCAGCTACAaggatcactacactactgtCCTATCCACCTTGGTTTGTTGCCCTGAAGAGGAATACGATCTTCCAATATTACGGTTTCAATATTTTTGTACCGACCGGTCTGTCATGTTAGGTCTTGGTTTGTTTCAGGAGGACAATGATCTATTAACTGAAAACTGTGGCCTTAAATATATGTACGGAAGTTAATCACTCATCTGAGTCAGAAGGATAGTTGTGAATGATCATAGGCTCTTAAACATAGCAGAGCTCTTGTAGTGGTGCTTTGAGGCCTGGTGCTTCCATTCTGCCATGTCCCATGGTTGACTTGGCAACACAAGTAAATCAAATCTGACAGGAACGTAAAGTGCCAAATAAATCAGAATTATTGTTACTGTACATTTCATTTCCAGACAATGATTTACAGAATCCTCCTGTTGTAGTGATATGCCTAGTATTACCGCTTTATAATAGTCCTGCATTACTCTAGTGTATTCCATCAAAAACAGAGGCTTTAGAAAAGCTATGGACCAAATATGGTCGTTAATGTGCCGTCTCCTATTGAACATGACTTTTTTGCTCCATCCTTAAAATGTTTTCTGGAACAAGACACTGTCCCAGTCCATCTTTTCCTCcttttgtttggttagcagtcAGAACCATTCAACTCAATATCAGTAGGCATATGGGAATATGAATATAGTCTAGAACCATTTTTTTTATATTCttgggactgatttagacctgggacagcaGGTGGGGGCAATTCATTATCAGTTAGAACCGAACGAGCAGAAGCTGCACCTCCGTAGAATAAAATTCCATGATCCAAGATGCAGAATGCCTCTGTATGACTGTCTCTGTGCCCTGGTCTGGGAAATGTTATCCCTTATGTCCCAACACATCCAACTGGATGACTTCAGATTTCACAATAGCGCAGAGATGTGAGAAAGTCGACGGACCCCCTTAACACTCGGCACTATCATCAATACTGGAGCCATTACCATTACCTTCGTGGCAACTTTAATGCTGTGTTTTCAACTCCCCTGCTTAGGCCGCTATAAATATTTAAAGGCCTATCTGTAGCTGAACTTGTGTTTCAATATTCAGGAGTTTGGCTCCTTTCATTATTGAGTAAGGTTCTCAGGATAGCAAAAACACAATTAAAGGGAACTAGCTTGTTTGTATTGCAGTTGAATGGTTTTGAGTTCTAGAGTTGCCAAATTAAAATACCTGTTTACATTTGTCTTGTTTGAAAAGTAACATTTTTATAGATTTAAAATGGTCAGGaagtattaaataaaacatttggtgcacacacacactccctgagcTTGGCAGTATCATTGATACCGGATCATTACCATTATCTTTGGCAACATTAATGCTGTATGTTTTCAACTCATCTGCTTAAGCCGCCATAAATATTTAAAGGCCTATCTGTAGCTGAACTTGTATTATTCAGGAGTTTGGGTCCTTTCATTATTGAATAAGGTTCTCAGGGATAGTGAAAACAAAGGGAACTAGCTTGTTTGCATTGCAGTTGGAAGGTTTTGTGCTCTAGAGTCGCCACATTTAAAAGAACTGTTTACATTTGTCTTGTATGAAAAATGAAATGTATAGATTTAAAATGGTCGTTTACATTTCCTGTGCTGAATCATGGCAGgaagtattaaaaaaaaaaaaaaacatggtccATATGGGGGTTAATGAACTAATACATTGTTTGGTATTCTAAATTGGCTACTTCCAAATTAGGTCCGTTTGGAATGACTGCTGACTGACAGAACAAGATCTCCATTTAATGTTACCATTACATTTCTGCAACATGCAAAACTAACTGCATCACAGAGTGTTGGAATACTGCTTTACTGCTGTTTTTAGATGTTCTGTTATTTTTCTGTTGATCATTTTCTTTGTCTCCTTTCACTATTGTTTCTTCATCACATGGCCTCAGTTCTAGCAAATGGTTGAAGACTTTACATAAACTTTCATAAAGACAACCTTTTGTCTTATCCCAAAGCACTTCGTATTGTGTATAAACTGTCACACCTATGCCAAGAAGTCATTGTTGCAATTTGTTGATTTTCTGTGCCCAGCCATATGTACAGTTTTGCACCTTTTGAATAAGGACTTTGCAAAAAATAAAAACTCAAACATTTCCAAGA
>TU314475
GTTTTTTTTTACatTTAGCTCAACATTAAGTTACTTCACCAATGGATAAAGCAGTATGGTGCAGGCAAGCTATGTACATGCTTTGGACAAAGTGTAGTGTAGAGTGACATGCGACTGAATTTTTGCAGGTGAGGAGAGCGCTGGGCATTTTGttacggaggagtggcttctatgaAGGATCTCTGAAAGTCTCTGAACTTTAGAGTTGGCTTAACtaacgttggaccagagctagcccttgatcatgactctcagttccattacacatAATGCCAtctagagtttgagagctagaCCAGACCTAACTGGGAAGGATTTTcagcaggcagacactggaatcaTTTCTGAGTGACAGTGAGGGCAACACCACACGAGCCACAGTGTTGACTTCGCTCCCGCTTGCTGAGCACCTCTGTCCTACAGTCAGGAGAGGGAAATAACTAGATAGCTGTCATCTTGTTCTGATATCGGTTGCACATTTATTGTGGTGATGTTCACAGAAAATTTACAATTACGGCATTATCTACATTGTTACCCcgattttaaaaaacaaagaaTTACTTTGATAAAAACAGTGATTCTGAAATTCGGGAGACAAATTTCAAATTCTCGTTGAAGTTTCTAGACGCAAGCATAAACTAGTTAGCTGGGGAGGGCTCACTAGTACgactgactggactgactgaactGAATCCATTCGTCGACACTCAACTCTCGTTGCACCACATATGTCATACATTTTGGGCACCAGGCGTGTCCATATAGCCTCTCCCAGAACACAGCTATTTTTTTAGCGATCATGTTTGTAATGCCAGTGGCCactttctttttttacattttgatgGAATGataaaaaaatcaaaaacagaacCAGAAAGAAATCAGCAGGAAAATTTTGCCCAAATACCGTGACTGCATTTGTGGAAAGCTACACCTTACTGCAGGGtatcccaaactcagtcctcagTCCaaaccgagtttgggaaacactgccttaCTGTATCTATGCAATACCAGACTCTCCCTTCCCACTCCTGAGAATCTGTGATTTGGTGGGCTAGCTGAGCTGTGGTTGTGTTGCATGTGCCACCTACAGCCAGCTACAaggatcactacactactgtCCTATCCACCTTGGTTTGTTGCCCTGAAGAGGAATACGATCTTCCAATATTACGGTTTCAATATTTTTGTACCGACCGGTCTGTCATGTTAGGTCTTGGTTTGTTTCAGGAGGACAATGATCTATTAACTGAAAACTGTGGCCTTAAATATATGTACGGAAGTTAATCACTCATCTGAGTCAGAAGGATAGTTGTGAATGATCATAGGCTCTTAAACATAGCAGAGCTCTTGTAGTGGTGCTTTGAGGCCTGGTGCTTCCATTCTGCCATGTCCCATGGTTGACTTGGCAACACAAGTAAATCAAATCTGACAGGAACGTAAAGTGCCAAATAAATCAGAATTATTGTTACTGTACATTTCATTTCCAGACAATGATTTACAGAATCCTCCTGTTGTAGTGATATGCCTAGTATTACCGCTTTATAATAGTCCTGCATTACTCTAGTGTATTCCATCAAAAACAGAGGCTTTAGAAAAGCTATGGACCAAATATGGTCGTTAATGTGCCGTCTCCTATTGAACATGACTTTTTTGCTCCATCCTTAAAATGTTTTCTGGAACAAGACACTGTCCCAGTCCATCTTTTCCTCcttttgtttggttagcagtcAGAACCATTCAACTCAATATCAGTAGGCATATGGGAATATGAATATAGTCTAGAACCATTTTTTTTATATTCttgggactgatttagacctgggacagcaGGTGGGGGCAATTCATTATCAGTTAGAACCGAACGAGCAGAAGCTGCACCTCCGTAGAATAAAATTCCATGATCCAAGATGCAGAATGCCTCTGTATGACTGTCTCTGTGCCCTGGTCTGGGAAATGTTATCCCTTATGTCCCAACACATCCAACTGGATGACTTCAGATTTCACAATAGCGCAGAGATGTGAGAAAGTCGACGGACCCCCTTAACACTCGGCACTATCATCAATACTGGAGCCATTACCATTACCTTCGTGGCAACTTTAATGCTGTGTTTTCAACTCCCCTGCTTAGGCCGCTATAAATATTTAAAGGCCTATCTGTAGCTGAACTTGTGTTTCAATATTCAGGAGTTTGGCTCCTTTCATTATTGAGTAAGGTTCTCAGGATAGCAAAAACACAATTAAAGGGAACTAGCTTGTTTGTATTGCAGTTGAATGGTTTTGAGTTCTAGAGTTGCCAAATTAAAATACCTGTTTACATTTGTCTTGTTTGAAAAGTAACATTTTTATAGATTTAAAATGGTCAGGaagtattaaataaaacatttggtgcacacacacactccctgagcTTGGCAGTATCATTGATACCGGATCATTACCATTATCTTTGGCAACATTAATGCTGTATGTTTTCAACTCATCTGCTTAAGCCGCCATAAATATTTAAAGGCCTATCTGTAGCTGAACTTGTATTATTCAGGAGTTTGGGTCCTTTCATTATTGAATAAGGTTCTCAGGGATAGTGAAAACAAAGGGAACTAGCTTGTTTGCATTGCAGTTGGAAGGTTTTGTGCTCTAGAGTCGCCACATTTAAAAGAACTGTTTACATTTGTCTTGTATGAAAAATGAAATGTATAGATTTAAAATGGTCGTTTACATTTCCTGTGCTGAATCATGGCAGgaagtattaaaaaaaaaaaaaaacatggtccATATGGGGGTTAATGAACTAATACATTGTTTGGTATTCTAAATTGGCTACTTCCAAATTAGGTCCGTTTGGAATGACTGCTGACTGACAGAACAAGATCTCCATTTAATGTTACCATTACATTTCTGCAACATGCAAAACTAACTGCATCACAGAGTGTTGGAATACTGCTTTACTGCTGTTTTTAGATGTTCTGTTATTTTTCTGTTGATCATTTTCTTTGTCTCCTTTCACTATTGTTTCTTCATCACATGGCCTCAGTTCTAGCAAATGGTTGAAGACTTTACATAAACTTTCATAAAGACAACCTTTTGTCTTATCCCAAAGCACTTCGTATTGTGTATAAACTGTCACACCTATGCCAAGAAGTCATTGTTGCAATTTGTTGATTTTCTGTGCCCAGCCATATGTACAGTTTTGCACCTTTTGAATAAGGACTTTGCAAAAAATAAAAACTCAAACATTTCCAAG

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0006662 glycerol ether metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0015035 protein disulfide oxidoreductase activity molecular_function
GO:0016853 isomerase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974745.1 False 5616 mRNA 0.44 17 56867209 56917413
TU314475 True 3247 lncRNA 0.40 2 56867210 56902275

Neighbor

gene id symbol gene type direction distance location
LOC110520269 LOC106586397 coding downstream 22556 56832398 ~ 56844653 (-)
LOC110520265 LOC106586394 coding downstream 199618 56652369 ~ 56667591 (-)
LOC110520263 LOC106586393 coding downstream 216256 56600804 ~ 56650953 (-)
arl5a arl5a coding downstream 266636 56589557 ~ 56600573 (-)
LOC110520260 NA coding downstream 288559 56495151 ~ 56578650 (-)
slc49a4 dirc2 coding upstream 226022 57143435 ~ 57206958 (-)
LOC110520276 LOC106586419 coding upstream 315220 57232633 ~ 57260239 (-)
si:dkey-91i10.3 LOC106586420 coding upstream 355060 57270782 ~ 57297762 (-)
LOC110520278 LOC106586422 coding upstream 403825 57321238 ~ 57330396 (-)
LOC118963713 NA coding upstream 415205 57332568 ~ 57336298 (-)
G276969 NA non-coding downstream 47317 56818645 ~ 56819892 (-)
G276907 NA non-coding downstream 194617 56671494 ~ 56672592 (-)
G276844 LOC106586392 non-coding downstream 381537 56484375 ~ 56485672 (-)
G276843 LOC106586392 non-coding downstream 383494 56483429 ~ 56483715 (-)
G276840 NA non-coding downstream 386727 56480259 ~ 56480482 (-)
G277110 NA non-coding upstream 50623 56968036 ~ 57046855 (-)
G277168 NA non-coding upstream 136572 57053985 ~ 57054282 (-)
G277245 NA non-coding upstream 271251 57188664 ~ 57189944 (-)
G277259 NA non-coding upstream 291520 57208933 ~ 57209198 (-)
G277576 NA non-coding upstream 303174 57220587 ~ 57222617 (-)
G275250 NA other downstream 1455722 55410143 ~ 55411487 (-)
LOC110520227 plekhm3 other downstream 1747997 55068639 ~ 55122013 (-)
G274344 LOC106586294 other downstream 2184404 54679918 ~ 54682805 (-)
G272713 LOC106586324 other downstream 3616125 53249926 ~ 53251084 (-)
LOC110520182 NA other downstream 4158393 52693956 ~ 52708816 (-)
G277673 LOC106586423 other upstream 485571 57402984 ~ 57403575 (-)
G277749 LOC106586429 other upstream 666973 57584386 ~ 57589183 (-)
G284018 NA other upstream 5797162 62714575 ~ 62715177 (-)
G286522 NA other upstream 8052136 64969549 ~ 64970755 (-)

Expression


Co-expression Network