LOC110520274


Basic Information

Item Value
gene id LOC110520274
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 57220562 ~ 57230455 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110520274
TTGATAATTACAGTGTTAGTAATTGGAACTGTATTGTGTGCATTACAGGACGTGGTGTGGTCTCAGTTTGGGTTCCTGGGTTGTAGTGGGAGAGACAGCACATTGTGGATTGATACAGAAGGTGCCAATACTCTCTGCCACCTGAACTCCTATGGGTAGAACCTGGTACTACAGGTGCAAGGAAGGAAGCGTTGGCACCTGTTCCCCCCTGCAAACAAGCGGTCTGTACCCCAGCAGGATCTCCTATGAGGAGTCTAGTGTGACGTACTCCAGACAGACCTCCAAAGGTTCCCCACAGACACACCAAGGCCCACAGTCACCCTCTAGCCTGGACAGGTGCTATTTGTTCCCAGACACTGGGGGCACCATGTGGAGTCTGTCGACCCTGTTAACGTCTCCATCAACTCCTGGATTGAGTTGGAAGTTGATGATGAGGCAAGAGTAGGCGAGGCCCTCGCCAAAGCCATTGTCTGTGCTCTGAGGACGACACTTAGTAACGACAATGATGATGCCTGGCTCAATCCCACTGAAGGAGGGGTTGGTGGTACTGATGTGAACATGCAGTACCTGAAGCTGGCTGTGGGGGCctgaatagagaggagagggacaacaaGTCACCGTGACTAA
>TU314755
TGGACGATTATCAATTTGTGCcgtgattttttatttattcatcaatTGAATTAAAATGAAATTGAGTCCAGTTCTGACAGTATCACACCAACATGTAAATGTAAAACAGATGCATGGGTATCTTTAATGAATTCCTTTGCCCCATCAGCGATCCTGGAGAAGCTAACTAGCCTAAGCCTAAATTGATACAGACACGTACAAATCAAAAGTGACAACTTTAGCAATCAGCagacattctctctctttttgatGATATCCTGTCGTGATAGGACAGACATTTTCAGTGGAACTTTTCAATGGCAGCCCTTTTCCTTTTGAGTCCTCGGGCAGTCAAGGCCTTGAACGTCCACTCTAGTTCGAGCTGGCCTCCATTAATTCATTTTCCTTTAATGATAATAGATGCTTAAGGGGCGGCCTGCATTTTTTCACAGGTCTGACGAAATTCATGCCTTAAAGACAGGCAGTCAGATGCCTTTTTAAATGATGAATAGCGCCATTTAAAAGTTGCTGAAAGCCAAGATTGTGAAGTCTATCATTTACAGTTGCCTGAACATGGTAATGGTTTCATTATCCAGGGTGCTGGGCAGAAACTccacttttttttgttgctttttaacAGGAAATGATTGACAGCGCAAATGGTTTGACAAAGAGCCTACAGACAACAAACATCTTGTTTCCTCTAGAGAGTGTCTGTCCCTATTGGCATCCtattcctacatagtgcactacttttgaccagggcccataggggtctggtgaaaagtagtacaATATATAGGGCATAAGGTGTCATTTGGGGTACAACCTTTGTTGACAGTCATTGCACTGCCTATTAAGCAACCCATGAGATGGTGAATGGGCATGCATTTTCACCTGTGTCTAGTGACAATGGAGGTTTCCCTCGGGATGTATTGCTGCCATGAATATACAGTATGATTGATAATTACAGTGTTAGTAATTGGAACTGTATTGTGTGCATTACAGGACGTGGTGTGGTCTCAGTTTGGGTTCCTGGGTTGTAGTGGGAGAGACAGCACATTGTGGATTGATACAGAAGGTGCCAATACTCTCTGCCACCTGAACTCCTATGGGTAGAACCTGGTACTACAGGTGCAAGGAAGGTAATTGTACAGAACTGGGTAGTGTTCAGTAGGCACAAAACaagaaaaataaaaactgaaatggaGAAGGACTACCTGGACATGTCCAATAAGAAGCGCCTTTTGTTTTCTGTTGCTAATTGTTTTGCTTCAATGAGCCCTAATGAACAAAACATCTCTCACTGGCAAGTGGTAGTAGTGCACACAGACGATGGATGTTTCCCTTCACAGAGGGAATTGTACAATAGATTAGAATGAAACAATTTAACAGCATTATAGCTGAGAAGAAAGGAGTGGTACTGGAGTCAGACAATAGATACAGCAAATCAATAGAATGAGAACTGTCTGTAGGGCAAAGATCTACTCACCATTCATCCCTCTATCTCTGAGGAAAGAAGGTTTAGAAACTACTTTTGGAGGATGTAGAGGTGGCTGTTTTTATTTCCTGGGAGGGGAGTGGGGTGAGAGTCAGGAGAGAAGTGGGGTGAGGggctgagaggagggaggtgagaggctGAGAAGAGggtagggagacagaggggaagggGATGAAACTCACTTGTGGAGATCAGATGGGTTCTCTGGTCCCTGAAAGAGAAAGTCATTCATCGAGGTCTCATGAGCGAGAGATGGGGGTATGAGGTGAGGCGCtttagttagttagttgtgtGGAGCACGGAGTCTGACAAAAGATACAAATATATTTGTGCATATTATCGTCTCACTGCTTTCACATTTGAAGATCACTAGTCTTGTTTCTTTAAATTGGCTGTTGAAACCTTTCACATTGATGTGATGACCTAACCAAAGAACTAACATTACATAATATTTCAATAAAG
>TU314756
ATATTGAACTATAGCTTAAATTGAATGGCGATAGATTCCAGGTTTCCTCAACTACATAGAATAGAACCATTGTGGTTTCAAGTTTTATTTGGCACATGCTGAAGTACAGTAACATGCTTAACTTGCAATGAAGCATGCAATGGCTTTGGTGAAGATGGCTTTCCCTTTAAAATAAACTgaacctagatcagcactcctaccctgtTATATTTCAGGAAGCGTTGGCACCTGTTCCCCCCTGCAAACAAGCGGTCTGTACCCCAGCAGGATCTCCTATGAGGAGTCTAGTGTGACGTACTCCAGACAGACCTCCAAAGGTTCCCCACAGACACACCAAGGCCCACAGTCACCCTCTAGCCTGGACAGGTACACACTGTGCCAGATCCTCCCTTGatcatgcttttttttttttttcaggacCTGGCTTAATCTGTGTcgagggagtcaggaagcaggtgcagaaggtgagtttaataataagaAACATGAAGATAATCAAAACAGGGGTAGCGTATTCAACATAAACCAtaccaatactgcctgaagactgAGGGtgatgatgaagtccaggtgtgcgcaatgatggttgccaggtgtgcgtaatgtggGTTGctaggaccggtggttagtagactggCGACGTCGAGTGCCGGAGCGGAAGTGACAGGAgtaggcgtgacagtacccccctccacTAGCCGCAGGATGACGCCAGGCCCATACCCTCCCAGTACACCAGgtactggagcCAACCCCCACGACGTCGGGAGTCCAGCAGGGACCTGACAGCAAAGGTGAGACTCCCATCAATGTTCAGGGGCGGGTAACCAGGAACCACCGGGTAGTTGTAATCTATAGGTTACCTCGTTGACCGGAGGACCTTAAGTTACAGGGCCCCATAAACCGGAGACTCAGCTTCCTACAGAGCAGGCAGAGCAGGAGGTTCCCGGTGGCGAGTCAGACACGATCACCAGGATGGAATACGGGAGCCTCAGTCTGCCGGCTCCACCTGCTCCTTCTGAACTACTCGTCTGCCGCAGAAGCGTCGGTCTGGCTTGGGGTCCATGGAGCCAGAGCTGGTTGATATCCCAGGACACACTGGAAGGGGGTCTGCCCGGTGGAGGAGTGGCACAGTGCATTCTGGGTGTACTCTATCCAGGGATGGAACCAGGCCAGCACCTAAGcaacctccccagctcctggttcatcctctccacctgcccggtGGACTGAGGCCGGTACCCAGAAGTGAGGCTGACGGTgacccccagcttctccatgaaggCTTTCCATACCCGTGACGTGAATTGGAGGCCACTATCGGAGACgatgtcctccggaaggccaTAGTGTCGGAAGAACTGCTGGAACTGTGCCTCAGCGACCTGGGGAGCAGTAGGGAGACCGAAGAGAGGGATAAAATGGCAGGATTTAGAGAATCGTCTTATTCCACAGTCTGGAAGATGAGGGCGTACTCTGCAGTGATCTGGGCACCCTGACGGAGCAGTCGCTCACCTCCCGCTCTGCTCTCAGGTGGATGATCGCCATaaacagagccatgaacctctCATAGGAACTCAGCTCCTCCTCTCCTAGAAGGCCGTAGCCCACTCCAAAGCCCGTCCGGTAAGCAGGGAAATGACCGCAGCAACCTTGGACCTCTCGGTGGTGGGGGCTCCTGTCTGATGATTGAAGTAGAGAGAGCACTAGAGTAGTAAGCCACGACATTCCGATGGAGTCGGGTCATTTGTCCGGTTgggatacatacatacatacggaTCGGCTGGGGATCTGGCTCGCTGGGACGACTCGTGGTAGAGGATCATCCACTAGTTGGAGATGAATTCTCGCGGGTGGTGGGGAACGTGGAGGACCTGATCCATTACCGTACCCAGTTGAGCCAGCTGGTCATGGTGTTGGCGGAGTAGGTGTTCCTGTTCGTCGACCATCTGGGAGATATCCTTAACTTCTGCTGCTTCCATATCTTGAGAGGCAGTATTCTGTAACGTAAACACAGGGAGTCAGgaagaaggtgagtttaataataaaacCATGACTATGCTCAAAACAGGCGCAAACCAAAACTGCCTGAAGACTGAgctactgagggctaaataaagggagagtaatcagggtgatgatGAAGTTCAGGTGTGCGcaacgatggggagcaggtgtgtgcaATGATGGTTTCCATGTGTGCGTAATGTGgattgccaggaccggtggttagtagaccggccACGTTGAGTGCCAGAACAGGAGAGCGGGACAATGACATGTTTGTTTTATCGGTTAATAATTGAGTAACCGTGACAGAACAGAAGCTTTAATGTTAAACATTATTGACTCTCAAAAGGAGCATGTTTCTCTGCCTCAGCTCACAGCCTCTCATCTGTTAGGATTCAGGATTGGTGACAAGGATTTTGGTTTATAAATCCAATTAAGACCTAGCCATAATCTATAACACTGGCTGCTGAGGATTGTTCTGGCAGAGCAGAGATTCATTATGGATGAAGAGGACAGGTATGCTACATGAAAGTAAGATTGTAACAACAGCCACCCAGACTTCTAGGAGTTCCAAATagcacgctattccctatataatccaCTTATATTGACCAGATTCACCAATTCAGACGCAGCAGCCCTAGTCAATGGAATATTAATCATTGGAAGGTTCAGCCTTACTCAACCCCACATTGCTGCTGCACAGTATGAGATCTGAGTGAGCTTGCAGGTCAAAGATGTTTAAATAATTTAAATTCTCTTTGTCTCATTATTCATACTTTGGTTTGTGACCACTGGCCTTTTCCTGTCTTGATACGGACTCTAGAAGCTAATTAGGAGAGGGGTTGTGTTGTCTTTTGTCTCTGTGATACCCACCACTCTTTCACCCTTCAGATTCCAGCAGTATAAGCCAGCACATCCACACGCTCTCTTTGAGTCAAGACAGTGGCAAAGCAATGAGTGTCTGTCCCACTTCTTATCTCTGGGAAACTAAGTGCTCCTGCAGAATACTAATGAAGTTAGTCACAAGTGATACCACTAAGAAGCAAAACAGTGGGGGCTGTTCAATTGGTTTATACGTTAAACCTATAACCTATTATGTATGTACATGACACCTAGTTTAAAGGGAACTTCAAAGAATTAGGTCTTTAGAGGTTATACACTTATAACAGATGTCTGTTTTCCACGGCTCTATGTCTGTGGGGTTGAACTAGGACGTATCGTCTATTGTGTCAAGATTAAGCTCAGTTACCCCCTAGAATAAAACACTTATC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110520274 False 627 mRNA 0.49 5 57221647 57230455
TU314755 False 1942 lncRNA 0.42 2 57220562 57222649
TU314756 True 3284 lncRNA 0.49 2 57222686 57226116

Neighbor

gene id symbol gene type direction distance location
sema5ba LOC106586418 coding upstream 116130 56917452 ~ 57105517 (+)
adcy5 LOC106586396 coding upstream 403117 56683064 ~ 56818530 (+)
LOC110520266 phs1 coding upstream 541080 56668133 ~ 56680567 (+)
rif1 LOC106586392 coding upstream 726803 56463388 ~ 56494844 (+)
tnfaip6 tsg6 coding upstream 758851 56454004 ~ 56462796 (+)
LOC110520279 LOC106586423 coding downstream 104582 57335037 ~ 57405623 (+)
LOC110520280 NA coding downstream 196970 57427425 ~ 57435274 (+)
LOC118964378 NA coding downstream 200113 57430568 ~ 57430693 (+)
LOC118936397 NA coding downstream 203690 57434145 ~ 57434270 (+)
clasp1a LOC106586426 coding downstream 215688 57446143 ~ 57554278 (+)
G276240 NA non-coding upstream 76299 57140946 ~ 57145348 (+)
G276200 NA non-coding upstream 112768 57014335 ~ 57108879 (+)
G276151 NA non-coding upstream 194364 56946153 ~ 57027283 (+)
G275953 NA non-coding upstream 593020 56628314 ~ 56628627 (+)
G277276 NA non-coding downstream 2210 57232665 ~ 57233877 (+)
G277279 LOC106586419 non-coding downstream 9616 57240071 ~ 57245276 (+)
G277285 LOC106586419 non-coding downstream 17079 57247534 ~ 57260425 (+)
G277293 NA non-coding downstream 31333 57261788 ~ 57262087 (+)
G277295 NA non-coding downstream 33651 57264106 ~ 57264419 (+)
G275553 LOC107595854 other upstream 1305514 55915329 ~ 55916133 (+)
G275542 LOC106586374 other upstream 1320904 55900194 ~ 55900743 (+)
LOC110520231 dbr1 other upstream 1846121 55371759 ~ 55375526 (+)
G274592 NA other upstream 2346532 54874399 ~ 54875115 (+)
G273094 LOC106586310 other upstream 3380030 53841264 ~ 53841617 (+)
G277296 NA other downstream 34112 57264567 ~ 57264892 (+)
G277973 NA other downstream 559279 57789734 ~ 57790332 (+)
G280315 NA other downstream 2822261 60052716 ~ 60054417 (+)
G281141 NA other downstream 3056933 60287388 ~ 60303967 (+)
G281591 LOC106586456 other downstream 3509784 60740239 ~ 60757350 (+)

Expression


Co-expression Network