LOC110520276 (LOC106586419)


Basic Information

Item Value
gene id LOC110520276
gene name LOC106586419
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 57232633 ~ 57260239 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597463.2
GACAGTAGCAGATCTGTACTGAACAGCCCTTGAAGTCACAAATTCATGGATCTGGAGTCGAATATTAACTAACGGGTTGAACATATGTTATAAGAGAGCTGCGTTTTCCAATGCTGCGCAGGGCGCTCAGTCACAGACAAGAGAGGAACGGACTTGGACGCACGTCAAGAGGTCCACCGACCGATGCGACGCTAGTGTGCCAAAAACACTCCAGAAAAAAACAGAGGAAATGGAGAAACGAAAGGAACATGAgttaaaaattcatgaaaatggAAAGACAAGCAAATCACCGAAACTATGTGGGACCAACTACCCTGTCAGCATCTCCTTTATAGTGGTGAATGAGTTCTGTGAACGCTTCTCCTACTATGGAATGAAAGCGGTGCTGACACTGTACTTCATCAACTACCTGCATTGGGACCCGAACCTTTCCACAGCAGTGTACCATGCCTTCTCCAGCCTCTGCTACTTCACCCCTGTGCTGGGGGCCCTCATCGCTGACTCTTGGCTGGGCAAGTTCAAGACCATTATCTACCTCTCTGTTGTCTATGTGCTCGGTCACATCGTCAAGTCTGTTGGGGCCATACCGAGTGTGGGGGACTCAACCATACACATagtACTGTCTATGGTGGGTCTGATCCTCATAGCCTTTGGTACAGGAGGTATCAAACCCTGTGTAGCAGCGTTCGGAGGCGACCAGTTTGATGAAGAGCATACAAATGAAAGGAGGAAATTCTTCTCCATTTTCTACATGTCCATCAATGGTGGGAGTGTCTTATCGACACTCATCACACCAATGTTGCGAGGAGATGTGCAGTGTTTTGGTGGTGACTGCTATGCTCTTGCCTTCGGAGTACCAGCGATTTTGATGGTCATTGCTCTAGTTGTGTTCATCTCTGGAAGTGGGATGTATAAGAAGAGTCCACCGGAAGGGAACATCTTGTTGGATGTGTGTAAGTGCATGGGGTTGGCCATCAAGAATCGTTGGAAGAGCTCTAAATATGACCCTAAGAAGAAACACTGGCTGGACTGGGCAGAGGACAAGTATCCGAGACGTCTGATCCATGAGATTAAGATGGTCCTAAGGGTTCTAGTGCTCTACATCCCTCTGCCCATGTTTTGGGCTCTGTTTGACCAGCAGGGATCCCGTTGGACTCTCCAGGCCACTCGGATGAACATGGCCTTCGGATCAACATTTGTCCTGAAGCCTGATCAAATGCAGATGTTAAACGCTCTGCTGATCCTCGTGTTTGTGCCTATCTTTGACATGGTTGTGTACCCACTCATAGGCCTGTGTAGGATCAATCTCACGCCGCTGAAGAAGATGGCTGTGGGTATGATCTTTGCTGCGCTGGCCTTCGGTTCTGCCACCTTGGTGGAGGTCAATGTCACGAAAACGGTGGTGGAGCCTGCACCACAGGGACAATGTCTGCTACAGGTCTACAATCTGGCTGTCAGTGACGTCAAACTGAACATCCCTGGGAGTAACCTCTTCTCACAACCCATCAAATCCTATGAAGATCCACCAGCATATCAGCATATTCAACTAGGGGGACACAACAAGACCATCACTATGGCGGTCACCCAAAATGAAATCCTTTACCAGTGTGTCCAGACCTTCACAGAGCAGAAAGCCTACACTCTCGTCCTGCACAGCAATGGTTCTGAGATTGTGTGTCAACTAGCAACAGACAACATACATAAAAGTGAAAAAATGGAAGCGTACCTGAGATTCATCAACACACGGAGCGAGGCTGTGAACATAACAGTAGGTGCTGTGGATTTTTACGTACCTGCTGACTATGGCATATCTCCCCATAACAGTGTGGAAAGAAAAGAGTACACAAATGATAAGTGTACATCAGGCTCACAGAATTTCCTCATCACCCTGGGCCTGCTTGACTTTGGAGCCTCGTACACTGTCATTCTCAAAGGAGATCCTGGAGAGATCATTCTACAGAAAATGGAGGATGTGAAGGCCAACAATGTCCACATAGCCTGGCAGATTCCACAATACGTCCTGATCACAGCGGGAGAAGTCATGTTCTCCATCACAGGCCTCGAGTTCTCCTACTCACAGGCCCCAGCTAACATGAAGTCAGTGCTGCAGGCCGGCTGGCTGCTGACTGTAGCCTTTGGCAATGTCATTGTGCTGATCGTCGCAGAGGGGGCAGGTCTGGATCAGTGGATGGAGTTCCTGCTGTTCGCTGGCCTCCTGGTGGCAGTCTGCATCATCTTCTCCATCATGGCTTACTTCTACACCTACGTAGACCCTGACGAGCTAGACAAGCTGTTCCCAGACAAGACAGTCAATGACGACGATGAAGACAACTTGAAAAAGAACCAGAAataccacctggaccagacagaCAACAGTATGTACTTGAACCCAATAGAGAAGCGCACTAAGATGTAGCTTGGTGACTGACGTACTGTGTTACGACTTCCCCCTCGATAGACCTGTAAGCCCCTATTGTGGAATGTTTTTATGCATTGGTAAATCAAAGCAAAGCATTACGATTTGGTGAATGCTGTTTGAGTATATTTTGACTGAGCCTTACTGTATGTAGTTTGTTGTtgtcacactgtctgtgtgatctTATGTACTAACCAGAGTTAGCACTCCAACCTAGACACCTCAAAATCCACAGGTGAAACCCAGGACCAGTAGGAACAAAACAACATTGTTGAAATACTTTAtggcaaaataaatgtaatttttgTGAATTTATAACATTTTACAGAATTTTGCAGTACTGCACATAATTAAACAAACGTTAGCTTCCTGTTTATAATGTTGTTCACAGTAGACAAGGAACACAACTGTCTCTTATAGTTAATGATACATGAAAGGGAACCTATCCAAAAACAACACAATAACAGAACATTGTAAAAATGGTCCCTCTTCATACAGGCTACTTGAGACAAAACTGGAGTAGACGGAAGTCCAGTAATACTTGACTAAACCAAAGTACAGATGACAAAGACAACAGTAAACATGTAGTCCCGCACAAATGATGCAGCGCCACCAGCTTGGGCTAATTGAGATATTGTGTGTGACTAGCAAATTTCTGTTAATTACTATAGCTCCACGCCttggccaatcagtgtaattttgtaaaagCCAGATCTCTGCAgcaagacgcatcattcaccCAATTTTCGTCAGAATTGGCCCGGTGGTGTCTGAGATATTGTGTGTGACTAACGTATGAACAAAAGGAAGGATGGAGACAAatccacagtcccctccccaATTTCATCGTGGGGGACAACTATGGAGTCAGGGAAAAGTCTCAAGACACTCTAGAGAAGACATGCTGCTCCTAATCATCAGCATAACATTTTCTAATCTTGAGAAACATTTTCTTGTAATTTTActgtaaataaaaaatgaaatgctaaatAAAAAGGTGTACATTTCTCTA

Function

NR:

description
solute carrier family 15 member 2-like

GO:

id name namespace
GO:0001878 response to yeast biological_process
GO:0042938 dipeptide transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K14637 SLC15A2, PEPT2; solute carrier family 15 (oligopeptide transporter), member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597463.2 True 3428 mRNA 0.46 23 57232633 57260239

Neighbor

gene id symbol gene type direction distance location
slc49a4 dirc2 coding downstream 25675 57143435 ~ 57206958 (-)
LOC110520270 LOC106586417 coding downstream 315220 56867209 ~ 56917413 (-)
LOC110520269 LOC106586397 coding downstream 387980 56832398 ~ 56844653 (-)
LOC110520265 LOC106586394 coding downstream 565042 56652369 ~ 56667591 (-)
LOC110520263 LOC106586393 coding downstream 581680 56600804 ~ 56650953 (-)
si:dkey-91i10.3 LOC106586420 coding upstream 12234 57270782 ~ 57297762 (-)
LOC110520278 LOC106586422 coding upstream 60999 57321238 ~ 57330396 (-)
LOC118963713 NA coding upstream 72379 57332568 ~ 57336298 (-)
LOC110505369 LOC106586424 coding upstream 149742 57409981 ~ 57414314 (-)
LOC110520281 LOC106586425 coding upstream 155843 57416082 ~ 57427344 (-)
G277576 NA non-coding downstream 10016 57220587 ~ 57222617 (-)
G277259 NA non-coding downstream 23435 57208933 ~ 57209198 (-)
G277245 NA non-coding downstream 42689 57188664 ~ 57189944 (-)
G277168 NA non-coding downstream 178351 57053985 ~ 57054282 (-)
G277110 NA non-coding downstream 185778 56968036 ~ 57046855 (-)
G277604 NA non-coding upstream 6697 57266936 ~ 57267196 (-)
G277647 NA non-coding upstream 89333 57349572 ~ 57349815 (-)
G277648 NA non-coding upstream 90156 57350395 ~ 57350781 (-)
G277649 NA non-coding upstream 91142 57351381 ~ 57351609 (-)
G275250 NA other downstream 1821146 55410143 ~ 55411487 (-)
LOC110520227 plekhm3 other downstream 2113421 55068639 ~ 55122013 (-)
G274344 LOC106586294 other downstream 2549828 54679918 ~ 54682805 (-)
G272713 LOC106586324 other downstream 3981549 53249926 ~ 53251084 (-)
LOC110520182 NA other downstream 4523817 52693956 ~ 52708816 (-)
G277673 LOC106586423 other upstream 142745 57402984 ~ 57403575 (-)
G277749 LOC106586429 other upstream 324147 57584386 ~ 57589183 (-)
G284018 NA other upstream 5454336 62714575 ~ 62715177 (-)
G286522 NA other upstream 7709310 64969549 ~ 64970755 (-)

Expression


Co-expression Network