LOC110520280


Basic Information

Item Value
gene id LOC110520280
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 57427425 ~ 57435274 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110520280
TATGCTGAGTCTAGTCACGTGTGTTAATGACGTCTGAAAGAAGAAAACGTGTTTTCGGTCTCGCGAATCGCCAAATAAGTGCCATGAGAGAAACTAAGGCACCGGTGGCTACTAAGCCGGCTAAAGCTTTTTTGGCTCTGAATCTGAAAGAGGAGCCTGAATTCAAGACGAAAGTCCAGGAGATGAAGAAGCGACCCAAAAAGGGACAACAAACAAGTCCAAGAGTGATTTATGTTGGACATCTTCCCACTGGGTTGTTTGAGCCTCAGCTCAAATCCTacattaaacagtttggaaatGTCGTCAGGTTACAACTGGCCAGGAGTAAAacgacaggTGGAGTTCGACTGATTGTCACCAAGATCGTTGCTGAGACAATGAACAACTAACTACCTGATGGGCGAGATACTGATCAAATGTAATCAGGTTCCTACTGAGGTGCATGAGGAGTTGTTTGTGGGATCACAGAGAGCTTTTAAGAAGCTGTGGCTCGCTACAACGAGACACACACCAAAGGAGGTCAAGGAGATGACCGGACAACTCCTACATGAAGAGGTCAAGCTCTGTAAAAGGCTGGCAAAGAAGGGAATCCACTACGACTTCCCAGGGTTTGCTTCTCATGTGCAACAGAAGAAAAAGTTAGATGACTCTGTGAATGCATCCACGTGTAATGAGACGTGACTCCAGTGTGAACCACCTCAGTTCTGGACAGGAGGAGGTCCATGAAGATCAACGATGAGGATGGCTAAATCATCAAGAATACCCCCGCCCAAAAAAAGTCTAAAGGCAaatgtaaagggaaagggggatacctagtcagactgtacaactgaatgcattcacctGAAtgccttccgcatttaaccccaacccctctgaatcagagaggtgcggggtgctgccttaatcgacatccatgtctttGGCACCtggggaacagttggttaactgccttgctctggcagaatgacagatttttaccttgtctgctcgggaATACGATCAAGCAACCTAAGGAGCAGAGTCTTGACTAAGATTCCTCCTCTGAGGAAGAGGAGACTGAGGAGGAGTCCTTCCTAGAAGGGAGTGAGAAGCCCACAACGTGTGAAGAGCTCTCAGGTGACAAGAGCCAGTCGTATAGGAAGGAGCATAGTGAACGAACGTCAACGGCTGTTGTTTAAGGGACAATGACTCAATTGAATTGCCTTGCTTGTAAAAATGTATCTGCTTTACAAGGTGGTTGGTCCTCTATATAATTGCACAGAGGAGAATGACTAGAGAGTCAATGACTGTTTGACAGTGTTAGAGCCTATGCACTTGTATAGCACCTCCTAAAGTCCCATAGCCAAGGCCTAAAATTAACACCTGCCAAATTTGGGTAGATTTTGGTATTTGCTGGTAAGATGTTGATTTCACCAGCCCAGTTGGgggtggtcagggctccacagtgcAAGCATTTCACTCGCATTTGTGAATAAAAATAGTAGAAGTATGATGACATTTATATAAAATAAATGCTGGAGTAGCT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110520280 True 1528 mRNA 0.46 6 57427425 57435274

Neighbor

gene id symbol gene type direction distance location
LOC110520279 LOC106586423 coding upstream 21802 57335037 ~ 57405623 (+)
LOC110520274 NA coding upstream 196970 57220562 ~ 57230455 (+)
sema5ba LOC106586418 coding upstream 321908 56917452 ~ 57105517 (+)
adcy5 LOC106586396 coding upstream 608895 56683064 ~ 56818530 (+)
LOC110520266 phs1 coding upstream 746858 56668133 ~ 56680567 (+)
clasp1a LOC106586426 coding downstream 10869 57446143 ~ 57554278 (+)
LOC110520283 LOC106586429 coding downstream 135946 57571203 ~ 57589227 (+)
ralb ralb coding downstream 515825 57951099 ~ 57969839 (+)
LOC118964187 NA coding downstream 540791 57976065 ~ 57978805 (+)
LOC110504354 LOC106586434 coding downstream 604583 58039857 ~ 58470598 (+)
G277404 NA non-coding upstream 11649 57414571 ~ 57415776 (+)
G277400 NA non-coding upstream 15950 57411173 ~ 57411475 (+)
G277346 NA non-coding upstream 17286 57409907 ~ 57410139 (+)
G277397 NA non-coding upstream 26869 57400261 ~ 57400556 (+)
G277352 NA non-coding downstream 1812 57437086 ~ 57439312 (+)
G277353 NA non-coding downstream 6287 57441561 ~ 57442509 (+)
G277441 NA non-coding downstream 44854 57480128 ~ 57505477 (+)
G277445 NA non-coding downstream 52940 57488214 ~ 57489144 (+)
G277296 NA other upstream 162533 57264567 ~ 57264892 (+)
G275553 LOC107595854 other upstream 1511292 55915329 ~ 55916133 (+)
G275542 LOC106586374 other upstream 1526682 55900194 ~ 55900743 (+)
LOC110520231 dbr1 other upstream 2051899 55371759 ~ 55375526 (+)
G274592 NA other upstream 2552310 54874399 ~ 54875115 (+)
G277973 NA other downstream 354460 57789734 ~ 57790332 (+)
G280315 NA other downstream 2617442 60052716 ~ 60054417 (+)
G281141 NA other downstream 2852114 60287388 ~ 60303967 (+)
G281591 LOC106586456 other downstream 3304965 60740239 ~ 60757350 (+)
G281714 NA other downstream 3456250 60891524 ~ 60893778 (+)

Expression


Co-expression Network