LOC110520288 (LOC106586437)


Basic Information

Item Value
gene id LOC110520288
gene name LOC106586437
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 58743901 ~ 58761841 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974792.1
AGAAATAGCTAGCTAAGTAGCGTGGGTGTCTTTTATGAGTAATCAAAAGATTCAGAAGCCAACGCTTACAGGCCAGCGTTTTAAAACTAGGAAGAGAGATGAAAAGAAGGTGTTTGACCCTACTCAGTTTCAGGAAACCATTGTACAAGGTCTGAACCAAACTGGCAGTGATCTTGACGCTGTTGCGAAATTTCTTGATGCCTCTGGTGCCAAGCTTGACTACCGCCGCTATGCTGAGACACTCTTCGACATCCTGGTGGCTGGCGGAATGTTGGCCCCAGGGGGTACCTTATCAGATGACTTGACCCGTACAGAGTTCTGTCTCTTTACAGCCCAAGAAGACCTGGAGACCATGCAAGCTTATGCTCAGGTTTTCAACAAGCTTATAAGGCGCTACAAGTACCTGGAGAAAGGTTTCGAAGAGGAGATCAAGAAGTTGCTGCTGTTCCTAAAGGGGTTCACTGAGTCTGAGCGCAACAAGCTGGCCATGTTGACTGGCATCCTGCTAGCCAACGGCAACATCTCAGCCTCTATCCTCAACAGCCTCTACAACGAGAACCTTGTCAAAGAAGGTGTCTCTGCAGCCTTTGCTGTGAAACTTTTCAAATCCTGGATCCATGAGAAGGACATCAACTCTGTGGCCGGAAGTCTCCGGAAGGTCGGCATGGATAACAGGCTTCTGGAGCTGTTTCCTGCCAACAAGCGGAGCTGTGAGCACTTCTCTAAGTACTTCACAGATGCTGGACTCAAGGAGCTGTCAGACTTTGCCAGGAACCAGCAGGCCATCGGGTCCCGTAAGGAGCTTCAGAAGGAGCTCCAGGAACAGATGGAGCGCGGGGATGCTTTCAAAGACATCATTGCCTCAGCCAGGGAGGAGATGAAGAAAAACAACATCTCAGAGCAGACCATGATCGGCATCGTGTGGACCAGCGTTATGAGCTATGTGGAGTGGAACAAGAAAGAGGAGCTGGTTACAGAACAAGCCATCAAACACTTGAAGCAATACAGCCCACTGCTGAAGGCGTTCACATCCCAGGGAGCCTCTGAGATTCTGCTGCTGGTGAAGATGCAGGAGTACTGCTATGACAACATCCATTTCATGAACTCCTTCCAGAAGATTGTGGTCCTGCTCTACAAAGCGGATGTTTTGAGTGAGGAGGCCATTCTGAAGTGGTACACCGAGGCCCACGTTGCCAAAGGAAGAAGTGTTTTCCTGGAACAGATGAAAAAGTTTGTGGAGTGGCTCAAGAACGCGGAGGAAGAATCTGAGTCCGAGGAGGAAGAGGCTGACTAAAAGACCTCAAGCCAAATCCAAGGctcgtttttattttttagaacaaCATTAATAACATATTTTTTTCTATTCTACCTCCTCAACAACCATAATGTCTAGATGTAATTTAAGGGCTTTTACATCATGTTCATTTTTTTAACTTAAAAGTTTACACTTCTGGATAGTAAGAATCATGAATAGATTTTCCCTTGACACACTTAATAATTCCTCATTTGAAGGGAAAGACATGTTGCCACATTTTAAAACCACCCCCCTTAACTCACCCAGCCCCTTCTGTTGGTATGTATCTGTGTTTTATGAAAGAATGTTCCCTTTAAAAATGGACTATTCATTCCGCTGGCATGATTCATAGCGATCTTTTACTGCAGTTGGACTCTTATTTGCCAGTGGTTGATACATAAATGCTCACTATTTAACtcctttttgtatttttatttagccAGTGTGACATGTCCAGATAATCTGATTTTAAATTGAATGGCCAGGCTTGAACTCTCTTGTCCACACTATATGAAGTTCTAGCTACCAGTCTACTGAAAAGGTGCTGGTGGTGTAAACTGTAATCGCTCTCTGACATCTTCTGTAACACTGTgccagattctagatttaattttggttaTTGTTGTAATTTCTTTACCCTGATATCAATTTGACTTTTTAAAATAAAGTTCAGTACTAGTTTTCA
>XM_036974791.1
tAATGCACCTTTAAAGAATGGATGCCAAACGCCCTTAAattccaaagaagaagaagaagattgcGCAGCCGCTTCACAGCCAGATAATTCATTTCAGATCTGTCGCAGTAACGTTCGTTGTTTTTCTTCGACTGTTTTTGAGAGTAACTTTGATTTCGGGTGTCTTTTATGAGTAATCAAAAGATTCAGAAGCCAACGCTTACAGGCCAGCGTTTTAAAACTAGGAAGAGAGATGAAAAGAAGGTGTTTGACCCTACTCAGTTTCAGGAAACCATTGTACAAGGTCTGAACCAAACTGGCAGTGATCTTGACGCTGTTGCGAAATTTCTTGATGCCTCTGGTGCCAAGCTTGACTACCGCCGCTATGCTGAGACACTCTTCGACATCCTGGTGGCTGGCGGAATGTTGGCCCCAGGGGGTACCTTATCAGATGACTTGACCCGTACAGAGTTCTGTCTCTTTACAGCCCAAGAAGACCTGGAGACCATGCAAGCTTATGCTCAGGTTTTCAACAAGCTTATAAGGCGCTACAAGTACCTGGAGAAAGGTTTCGAAGAGGAGATCAAGAAGTTGCTGCTGTTCCTAAAGGGGTTCACTGAGTCTGAGCGCAACAAGCTGGCCATGTTGACTGGCATCCTGCTAGCCAACGGCAACATCTCAGCCTCTATCCTCAACAGCCTCTACAACGAGAACCTTGTCAAAGAAGGTGTCTCTGCAGCCTTTGCTGTGAAACTTTTCAAATCCTGGATCCATGAGAAGGACATCAACTCTGTGGCCGGAAGTCTCCGGAAGGTCGGCATGGATAACAGGCTTCTGGAGCTGTTTCCTGCCAACAAGCGGAGCTGTGAGCACTTCTCTAAGTACTTCACAGATGCTGGACTCAAGGAGCTGTCAGACTTTGCCAGGAACCAGCAGGCCATCGGGTCCCGTAAGGAGCTTCAGAAGGAGCTCCAGGAACAGATGGAGCGCGGGGATGCTTTCAAAGACATCATTGCCTCAGCCAGGGAGGAGATGAAGAAAAACAACATCTCAGAGCAGACCATGATCGGCATCGTGTGGACCAGCGTTATGAGCTATGTGGAGTGGAACAAGAAAGAGGAGCTGGTTACAGAACAAGCCATCAAACACTTGAAGCAATACAGCCCACTGCTGAAGGCGTTCACATCCCAGGGAGCCTCTGAGATTCTGCTGCTGGTGAAGATGCAGGAGTACTGCTATGACAACATCCATTTCATGAACTCCTTCCAGAAGATTGTGGTCCTGCTCTACAAAGCGGATGTTTTGAGTGAGGAGGCCATTCTGAAGTGGTACACCGAGGCCCACGTTGCCAAAGGAAGAAGTGTTTTCCTGGAACAGATGAAAAAGTTTGTGGAGTGGCTCAAGAACGCGGAGGAAGAATCTGAGTCCGAGGAGGAAGAGGCTGACTAAAAGACCTCAAGCCAAATCCAAGGctcgtttttattttttagaacaaCATTAATAACATATTTTTTTCTATTCTACCTCCTCAACAACCATAATGTCTAGATGTAATTTAAGGGCTTTTACATCATGTTCATTTTTTTAACTTAAAAGTTTACACTTCTGGATAGTAAGAATCATGAATAGATTTTCCCTTGACACACTTAATAATTCCTCATTTGAAGGGAAAGACATGTTGCCACATTTTAAAACCACCCCCCTTAACTCACCCAGCCCCTTCTGTTGGTATGTATCTGTGTTTTATGAAAGAATGTTCCCTTTAAAAATGGACTATTCATTCCGCTGGCATGATTCATAGCGATCTTTTACTGCAGTTGGACTCTTATTTGCCAGTGGTTGATACATAAATGCTCACTATTTAACtcctttttgtatttttatttagccAGTGTGACATGTCCAGATAATCTGATTTTAAATTGAATGGCCAGGCTTGAACTCTCTTGTCCACACTATATGAAGTTCTAGCTACCAGTCTACTGAAAAGGTGCTGGTGGTGTAAACTGTAATCGCTCTCTGACATCTTCTGTAACACTGTgccagattctagatttaattttggttaTTGTTGTAATTTCTTTACCCTGATATCAATTTGACTTTTTAAAATAAAGTTCAGTACTAGTTTTCA

Function

NR:

description
PREDICTED: basic leucine zipper and W2 domain-containing protein 1-A-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974792.1 False 1979 mRNA 0.44 12 58743901 58761334
XM_036974791.1 True 2113 mRNA 0.44 12 58743901 58761841

Neighbor

gene id symbol gene type direction distance location
LOC118964362 NA coding downstream 241202 58502557 ~ 58502699 (-)
si:dkey-3d4.3 LOC106586432 coding downstream 800589 57934070 ~ 57943312 (-)
LOC110520286 LOC106586431 coding downstream 824595 57909607 ~ 57919306 (-)
LOC110520285 LOC106586430 coding downstream 1008984 57632140 ~ 57734917 (-)
LOC110520284 LOC106586429 coding downstream 1134875 57595333 ~ 57609026 (-)
LOC110520289 LOC106586438 coding upstream 4586 58766427 ~ 58774628 (-)
LOC110520290 myo1b coding upstream 13790 58775631 ~ 58932254 (-)
vwc2l LOC106586444 coding upstream 353575 59115416 ~ 59144836 (-)
cps1 cps1 coding upstream 1404137 60165978 ~ 60253769 (-)
map2 LOC106586448 coding upstream 1530562 60292403 ~ 60416303 (-)
G279344 NA non-coding downstream 3205 58740480 ~ 58740696 (-)
G279338 NA non-coding downstream 9666 58734000 ~ 58734235 (-)
G279337 NA non-coding downstream 9967 58733642 ~ 58733934 (-)
G279328 NA non-coding downstream 23862 58719550 ~ 58720039 (-)
G279318 NA non-coding downstream 33122 58710524 ~ 58710779 (-)
G279501 NA non-coding upstream 43329 58805170 ~ 58805443 (-)
G279581 NA non-coding upstream 190678 58952519 ~ 58952867 (-)
G279700 NA non-coding upstream 208337 58970178 ~ 58970954 (-)
G279856 NA non-coding upstream 410106 59171947 ~ 59172147 (-)
G279905 NA non-coding upstream 445490 59207331 ~ 59207762 (-)
G277749 LOC106586429 other downstream 1154718 57584386 ~ 57589183 (-)
G277673 LOC106586423 other downstream 1340326 57402984 ~ 57403575 (-)
si:dkey-91i10.3 LOC106586420 other downstream 1446139 57270782 ~ 57297762 (-)
G275250 NA other downstream 3332414 55410143 ~ 55411487 (-)
LOC110520227 plekhm3 other downstream 3624689 55068639 ~ 55122013 (-)
G284018 NA other upstream 3952734 62714575 ~ 62715177 (-)
G286522 NA other upstream 6207708 64969549 ~ 64970755 (-)
G286580 marco other upstream 6252418 65014259 ~ 65029736 (-)
G286638 NA other upstream 6292859 65054700 ~ 65075985 (-)
G286953 LOC107579696 other upstream 6473339 65235180 ~ 65235908 (-)

Expression


Co-expression Network