LOC110520289 (LOC106586438)


Basic Information

Item Value
gene id LOC110520289
gene name LOC106586438
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 58766427 ~ 58774628 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597480.2
TATCTCCCTACTGGTGGGAAATATATCCTTATCAAAAAAGTCTGCTAAGTCTATCTGGCGTCGATAGAGAGACGTGCTAGTTCATAAGTAATCATGGCAACACGGTGGGGAATCTGCAGTGCAGGGAAAATCAGCCACGACTTTTCAGTTGCTCTGAGGACCCTACCTCACGACGACCACCAGATTGTGGCTGTTGCTGCTCGGAATCTCCATCATGCACaagagtttgccaaaaagcacaaCATCCCAAGAGTCTATGGGAGCTATGAGGAGCTAGCAAAAGACTCAGACATAGATGTGGTGTATGTGGGAACCATCCACTCTCACCACCTGAGCACAGGTAAGCTCTTCTTGACCTCCCATAAGAACGTGCTCATAGAGAAACCCCTGGCCATGAATCTAAGAGAGGTACTGGAGCTCACCAACACAGCCAAGGAGAATGATGTATTTCTGATGGAGGCCATCTGGACTCGTTTCTTCCCTGTGTCTGTAGAGGTGGGCAGGCTGCTGGGCCAGGGTGAGGTGGGAGAGGTCCAGATGGTAAGGGCCGACCTGGGAGcccccctcacacacatccctcgccTGACCCATAGAGAGCTGGGTGGAGGGGCACTACTGGACCTGGGGATCTACTGCCTGCAGTTTGTCTTCATGGTGTTCAATGGGGAGAGACCGGAGTCCATCCAAGCCATGGGATACTGTATTGACACAGGAGTGGATGGAACAGTAGTTTTGGTCTTAAAGTTCTCTGGGAACAGAATGGCTGTTTGCACGTGCTCCATCACGATGATGCTGACAAATGATGCTGTTATCACTGGGACCAAGGGGACCATCAAGGTCCCCAACCACATGTGGTGTCCTACGAGCCTGGAGGTGAATGGAGAGGTGACGCAATACCCTCTCCCTGAGCCCAGCCTTCCCCTCAACTTCATTCACAGTACTGGGCTGCGCTACGAAGCAGAGGAGGTCAGGCAGTGTCTGCTTAAAGAGCTGAAGGAGAGCTCTGGAATGCCTTGGTCACACTCACACCTTCTCGCCGAGGTCATGGATGAAGCCAGAAGACAAGTGGGAGTGACATATAATCAAGACAGCGTCCAATGAGAAATAATGCAACCCAAGTCCCCCTTTCTCAGTCATGGATGCACTCTCTACCGATGCTAGTCAGCAGGTGACTTCGGTCCAATGAATGCTATAGGTTATGCTGTTATGATGGTTAAACTAAGGGGGTGTGCTTGGGGCGGCTCCCTCTGATCTGCCTGGTTATAATGGtctgtctcccaaatggcaccatattccctttatggTGCACACCAGTGCATGagtcctggtcaaagtagtgaacagggtgccatttgggatgcagacatggTCTCAGGAGCTTTTAATAACTTATGAGGCTAATCGGCCTATGATGTTTATTTCATGGGGATTTTTTTTATGGATATGTGCCAGTTATGTTCAGCTTGCCAGCATCCATCCTATTGAGTTTGCTGTTTTGCTTGTTTGACCTCAAGCGATTGTCCAGTCACTTAGTAGGTAATAGGTTACAACAGAACAGACTACGTGTTACCTTGCTAGTTAGAGAGAACATTGATCTCCAGATTGGAGTTGAGTGCAATACTCCTCATTCTGCTAATGTAACATAGGCTACCACCACTGCAGGGGAGATGATCAGCAGGCCTAttgcttatttccttattttTCTATAATTTTGGAAAGTGACTAATTATGGCCACAACAAGGTCAAGGTCATCCAAGGTCACACAGAGGTTCTTAGCAGTCTGGGAGGTTGTGTCACAGACCGAGTCTCCGTGCCATAGAAATTCAGACATAAAACCAGACGTTTATTGAAGTTGTGTATTGATTGCATTGATGAGGACGCTCATGAAATAATTGTAAAGATATCCCCATTAGTTCACCTGTAAAAGAGAGATATGCATGTttagtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttctgtacagcacagaTATataagctgatgtaagaagggctgtataaatccatttgatttttgatttttttttagttTAGTCGGAACGTTGGTAATTGGTTTTAGAGCGCAAATGTTAATATAAGGATGTTGTTTTAAAGCTAGAACTAGCGACTACTAATGTAATGAAATGAGATCACCATTTATAtggataaataaatgttttacaa

Function

NR:

description
trans-1,2-dihydrobenzene-1,2-diol dehydrogenase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597480.2 True 2201 mRNA 0.46 7 58766427 58774628

Neighbor

gene id symbol gene type direction distance location
LOC110520288 LOC106586437 coding downstream 4586 58743901 ~ 58761841 (-)
LOC118964362 NA coding downstream 263728 58502557 ~ 58502699 (-)
si:dkey-3d4.3 LOC106586432 coding downstream 823115 57934070 ~ 57943312 (-)
LOC110520286 LOC106586431 coding downstream 847121 57909607 ~ 57919306 (-)
LOC110520285 LOC106586430 coding downstream 1031510 57632140 ~ 57734917 (-)
LOC110520290 myo1b coding upstream 1003 58775631 ~ 58932254 (-)
vwc2l LOC106586444 coding upstream 340788 59115416 ~ 59144836 (-)
cps1 cps1 coding upstream 1391350 60165978 ~ 60253769 (-)
map2 LOC106586448 coding upstream 1517775 60292403 ~ 60416303 (-)
kansl1l NA coding upstream 1647013 60421641 ~ 60463431 (-)
G279344 NA non-coding downstream 25731 58740480 ~ 58740696 (-)
G279338 NA non-coding downstream 32192 58734000 ~ 58734235 (-)
G279337 NA non-coding downstream 32493 58733642 ~ 58733934 (-)
G279328 NA non-coding downstream 46388 58719550 ~ 58720039 (-)
G279318 NA non-coding downstream 55648 58710524 ~ 58710779 (-)
G279501 NA non-coding upstream 30542 58805170 ~ 58805443 (-)
G279581 NA non-coding upstream 177891 58952519 ~ 58952867 (-)
G279700 NA non-coding upstream 195550 58970178 ~ 58970954 (-)
G279856 NA non-coding upstream 397319 59171947 ~ 59172147 (-)
G279905 NA non-coding upstream 432703 59207331 ~ 59207762 (-)
G277749 LOC106586429 other downstream 1177244 57584386 ~ 57589183 (-)
G277673 LOC106586423 other downstream 1362852 57402984 ~ 57403575 (-)
si:dkey-91i10.3 LOC106586420 other downstream 1468665 57270782 ~ 57297762 (-)
G275250 NA other downstream 3354940 55410143 ~ 55411487 (-)
LOC110520227 plekhm3 other downstream 3647215 55068639 ~ 55122013 (-)
G284018 NA other upstream 3939947 62714575 ~ 62715177 (-)
G286522 NA other upstream 6194921 64969549 ~ 64970755 (-)
G286580 marco other upstream 6239631 65014259 ~ 65029736 (-)
G286638 NA other upstream 6280072 65054700 ~ 65075985 (-)
G286953 LOC107579696 other upstream 6460552 65235180 ~ 65235908 (-)

Expression


Co-expression Network