LOC118944557


Basic Information

Item Value
gene id LOC118944557
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 59093144 ~ 59094205 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039918.1
TCTGATCTCATTTCTGACCATGTCCCAaatttcaccctattccctatatagggcataCAATGATGCCGGTTGTGTGAAGGGCATGTTCTCATGTCTCTAATTACTGACTCTGTACCTGAGAACCTGATTTGATAACAGCTGCAGGGCCCATGATGCCTGTGTAAAATAAATTTGGATCAGCCAATGTGTTTGGATGGCATGTTCACATGTGTCTTTGACCCTAAACTTGTGGCTTGTCTCACCAATCTGTCCACCCCACAGGGAGATGTGGAGACCGTGAAGGAGCTCCTAGGCCAGGGGGCTGACCCCAACCTGAAAGACGACGCTGGATGGACCCCACTGACTGTTATGGTTCAGTGAGAAACATGACTGGCGAAGGAGTCACTCAGAGCTGGTTTGAACCGACATGtcaacgacccccccccccccccctctcagttTGGCATGGAATATACAGAAGGACACCAAATTCACAACGAGCAACAATGTGTTTGTAGGCGTAATTAAAAAGTTGAGGAAAGAAGGGCGCGACAAAACTGCCCATCAAGCAGCCATAACTGAAGTTTGAACACGACATGCAGCTCATCAAACAATCCAAGGCTCTGGACACTGAAACATCTGAGGGTTTGGTGAACAAAGTGTGGTTTGATGTTAATTTTGGGcgaaggggaaggagggagaacgTTTTTCTTAAAATTGACTGATATAAAATATGTACAGACACAGTTTTTACATGAATGTAATGTACGTTTGCTATCTAGCCTGTGGTTATGTTTCACAGCAACCAGTCTAGCAACAACTTTTGTCCGGACTACTTTTTCTGGCGGAATGCATTTTTGAATTTATTTATTAAAGCTAAATGTTCAGTTTA

Function

NR:

description
zinc finger MYM-type protein 3-like

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039918.1 True 871 mRNA 0.45 2 59093144 59094205

Neighbor

gene id symbol gene type direction distance location
abca12 abca12 coding upstream 28352 58961640 ~ 59064792 (+)
pofut2 LOC106586440 coding upstream 144520 58936477 ~ 58948624 (+)
LOC110504354 LOC106586434 coding upstream 622554 58039857 ~ 58470598 (+)
LOC118964187 NA coding upstream 1114339 57976065 ~ 57978805 (+)
ralb ralb coding upstream 1123305 57951099 ~ 57969839 (+)
LOC110505376 NA coding downstream 419240 59513445 ~ 59515061 (+)
ikzf2 LOC106586445 coding downstream 462473 59556678 ~ 59581956 (+)
erbb4b LOC106586446 coding downstream 776354 59870559 ~ 60052294 (+)
LOC110505381 NA coding downstream 1173437 60267642 ~ 60269899 (+)
myl1 LOC100135947 coding downstream 1183040 60277245 ~ 60286080 (+)
G279597 NA non-coding upstream 38026 59052772 ~ 59055118 (+)
G279481 NA non-coding upstream 159448 58933384 ~ 58933696 (+)
G279385 NA non-coding upstream 262836 58823855 ~ 58830308 (+)
G279365 LOC106586439 non-coding upstream 291753 58778970 ~ 58801391 (+)
G279297 LOC106586437 non-coding upstream 331225 58743907 ~ 58761919 (+)
G279855 NA non-coding downstream 77464 59171669 ~ 59171914 (+)
G279890 NA non-coding downstream 104228 59198433 ~ 59198651 (+)
G279897 NA non-coding downstream 108747 59202952 ~ 59203160 (+)
G279911 NA non-coding downstream 118274 59212479 ~ 59212718 (+)
G279977 NA non-coding downstream 182793 59276998 ~ 59277457 (+)
G277973 NA other upstream 1302812 57789734 ~ 57790332 (+)
G277296 NA other upstream 1828252 57264567 ~ 57264892 (+)
G275553 LOC107595854 other upstream 3177011 55915329 ~ 55916133 (+)
G275542 LOC106586374 other upstream 3192401 55900194 ~ 55900743 (+)
LOC110520231 dbr1 other upstream 3717618 55371759 ~ 55375526 (+)
G280315 NA other downstream 958511 60052716 ~ 60054417 (+)
G281141 NA other downstream 1193183 60287388 ~ 60303967 (+)
G281591 LOC106586456 other downstream 1646034 60740239 ~ 60757350 (+)
G281714 NA other downstream 1797319 60891524 ~ 60893778 (+)
G281996 NA other downstream 1939561 61033766 ~ 61037105 (+)

Expression


Co-expression Network