LOC110505376


Basic Information

Item Value
gene id LOC110505376
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 59513445 ~ 59515061 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002470749.2
gcgccagtgcagttgccataccatgcggtgatacagcccgacaggatttgtcatggttccacctgtcaccagacGACGGCAAAGACCGTCCTAGAGACACTAACGACGCTCAGCAAGCTTCTGCCTAAACATGGACCAAGCAGTTATCACCCAGATCAAGAATCTTCTAAGGAGCACTGCTGGGGCGGCAGCAAGAACAACTCTCCCAAATATCAAAGACCCTCCGGGCACTTACCAACTCCCTCCAACCACAGTCCAACCCAGGTGGAGCCAATGTCCAAGTCTCATCGCCCAGTGCTACAGGCGTCTCCGTAGTTCCTCCAGGGAGCCTGCAGTGGGAACCTAAGATCCCAGCCCCCGAGAGGTATGACGGCCAACCGGGAGGATGCAAGGGGTTCCTCGCTCAGTGTTCTCTGGTGTTCGACCTACAGTCCTCCTCGTTCCACACAGATCGGGCCATGATCTCCTACATCTCTCTACTCTCGGTACTGCCTAAATCTCTTCTCATCTGGTCTGGGCTGAATTACAATCCTTTGTGGACCTGCCTTTACTGATGAAGGCCATCACTTCTTGCCTCTCCTCATGGTCTGTTTCCTGCCCTCATCAGCATGGTCTGTTTCCAGTCCTCATCAACATTAGCAAAGTATCTGGCATCTGCCCAGATGTCTGCCTTCATGAACTTTTTAAAAGGCTTTACGCAGGCACATATTTACTGTAACGTTGACATGGAGCTAAGCTACGTTACAGTACTCTAGTACAATAAAATTGTGCAATGTTTTATTTAGTATCCAGTTATTTTGCTGAGTGCAAGTTGGTGCCGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002470749.2 True 821 mRNA 0.51 3 59513445 59515061

Neighbor

gene id symbol gene type direction distance location
LOC118944557 NA coding upstream 419240 59093144 ~ 59094205 (+)
abca12 abca12 coding upstream 448653 58961640 ~ 59064792 (+)
pofut2 LOC106586440 coding upstream 564821 58936477 ~ 58948624 (+)
LOC110504354 LOC106586434 coding upstream 1042855 58039857 ~ 58470598 (+)
LOC118964187 NA coding upstream 1534640 57976065 ~ 57978805 (+)
ikzf2 LOC106586445 coding downstream 41617 59556678 ~ 59581956 (+)
erbb4b LOC106586446 coding downstream 355498 59870559 ~ 60052294 (+)
LOC110505381 NA coding downstream 752581 60267642 ~ 60269899 (+)
myl1 LOC100135947 coding downstream 762184 60277245 ~ 60286080 (+)
LOC118964303 NA coding downstream 867613 60382674 ~ 60383352 (+)
G280240 NA non-coding upstream 36457 59474706 ~ 59476988 (+)
G280168 NA non-coding upstream 103365 59409672 ~ 59410080 (+)
G280143 NA non-coding upstream 125225 59387974 ~ 59388220 (+)
G280142 NA non-coding upstream 125702 59387523 ~ 59387743 (+)
G280137 NA non-coding upstream 132490 59380751 ~ 59380955 (+)
G280324 NA non-coding downstream 78069 59593130 ~ 59593400 (+)
G280331 NA non-coding downstream 92476 59607537 ~ 59691190 (+)
G280950 NA non-coding downstream 545905 60060966 ~ 60061230 (+)
G280977 NA non-coding downstream 573103 60088164 ~ 60088370 (+)
G280994 NA non-coding downstream 585135 60100196 ~ 60100412 (+)
G277973 NA other upstream 1723113 57789734 ~ 57790332 (+)
G277296 NA other upstream 2248553 57264567 ~ 57264892 (+)
G275553 LOC107595854 other upstream 3597312 55915329 ~ 55916133 (+)
G275542 LOC106586374 other upstream 3612702 55900194 ~ 55900743 (+)
LOC110520231 dbr1 other upstream 4137919 55371759 ~ 55375526 (+)
G280315 NA other downstream 537655 60052716 ~ 60054417 (+)
G281141 NA other downstream 772327 60287388 ~ 60303967 (+)
G281591 LOC106586456 other downstream 1225178 60740239 ~ 60757350 (+)
G281714 NA other downstream 1376463 60891524 ~ 60893778 (+)
G281996 NA other downstream 1518705 61033766 ~ 61037105 (+)

Expression


Co-expression Network