LOC110520303 (LOC106586453)


Basic Information

Item Value
gene id LOC110520303
gene name LOC106586453
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 60607110 ~ 60615212 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597522.2
CCCTCGTTTTAGTTGCAACTGTTAGCCGGAATGAATACAGCCCAGCTCTCGTCcgcctgacctagtgagagaacTGTACATTTTGACACGATTAAGATTTGGGCAATATTTTGACAGAATGGGACACGCGCACTGCTGTACTGTGCTCCTTATAGTATTCCTTGCGCTACAGCAAGCTGCTGGATTTTGGCTCTTCGATGTCTTTCCATCAAGTTTCAAAACTCAAAACAAAGTGCCAAACAATAGCACTCCGCCGGTTCTTATAGtgcCTGGGACTGCAGGAAACCAGCTTGAAGCCAAGATTGACAAGCCAAGCCGTGTGCATTGGATGTGCTACAAAAAGACAGATGACTTTTTCACACTTTGGATTGACCTGAATATGTTCATGCCAATTGGGATTAACTGTTGGATTGATAATATAAGAATTGTATACAATAGGACAACTCGCAAGTCATCCAATTCTGCCGGGGTGTCTGTGAGAGTGCCTGGTTTTGGACAAACATATACTGTTGAGTTCTTGGACAACCACAAGCTGTCAGGTTATTTTAATAATATGGTTACACATTTGGTCAACATGGGATATGTCCGCAATGAGTCTGTCCGAGCAGCACCATATGACTTCAGAGTAGCTCCGAACGAGCAGGAGGAATACTTTGCACGACTGAAGAAGCTGATTGAGGATATGTACGAGAGGGATCAACAACCACTTTACATCCTGGGCCATAGCATGGGAAGCAATTATATCCTCTACTTCTTATATCAGCAGACCCAGGCTTGGAAAGACAAATACATCAAAGGCTTCATTTCACTTGGAGCACCCTGGGGTGGGGCTGTCAAGACCCTTCGAGTACTAGCATCAGGTGAAAATCTTGGCATCCCACTGGTGTCCAACATCAAGATCCGGGAGCAGCAGCGGATGACCACCACAAACCCCTGGATGCTTCCATTTGAAGAGGTCTGGCCTACAGACCACGTCTTCATCTCCACGCCATTATTCAACTATACCCGCCAGGACTACCAGCGCTTCTTTAAAGACATTGACTTTGAAGATGGCTGGTTCATGTGGGAAGACACCAGAAACTTGACAGCTGGTCTGCCCCCTCCTGGTGTTGAGATGTACTGCTTCTATGGTGTGGGGCTGCCCACACCGGTTACCTATATTTATGACGACCAGTTCCCAAATGCAGACCCCATAGACTATGTGTATGCTGATGGGGATGATACAGTGGACAGTCTTAGCCTCGGTCTTTGTAAACGCTGGAGAGGGAAGCAAGCACAGCCTGTCCATGTCAAGGAATTCAGGTCTATGCCCCACATGGAAATAGTATTAAATAGGAAGGTGATCAATGTGGTCCAGAGTATTCTGGAGGGAAGATATGGTGAAGAGGATTCTACATTGATGAACTGATGAACATCCCATTGATTCCCCACTCATGCAAGATCAGGCCCAGCCGGACCAGCCTCCCAAATCTATAGTGTAAGCTTTTGGGGAGAAAATTATTCACCCTCCCAATATACATACTATTACTGATGCCAGTAGGCTAGCTACGGAGGTGGACTTATACACAATGTACAACCcactaggaacacctgctctttccatgacagactgaccaggtgaatccagctgaaagctatgatctcttattgatgttaCTTCCAACTTCAATCagtgaagatgaaggggaggatacaggttatagaatgatttttaagccttgagataattacCACCCCATAAAATTATTTGCGCCTCTACCAGATGGAAACTAAAAGTGTAATAGCTGTGCTCAATGTAATGGCACTTACAAATGTAGACCCTTCAAACACCCTCAAACAGGGAAAcggatcccaatcaaaggtgttatcatgtgctccactaaggcagttatttgtGTTATAACTtttccttgtggtaaaaattgtGGGTAAAAGACAGCGCAAATTAAAAATAAGAATCAtggagcatcgtagcaccattaggtgcaaaAACTAGACGTACCCAGTTGTGGCCCACTTTTTGGAAGCGAACCACTATTTCGTCCCTTCGTGAAATCgccatcgaacatgtcaccctcccaaGAAGAGGGGGTGACCTCAAAAGAGAGGCCGCCTGGATCTTTCATTTAAagaccccctctctcttgctcccttctGTATCaatgtagactttgatctgaagccattcttgtgattgaTTTTCCTATTCATTGTAAATATTTATAGGCCTATGTAGACAAATTGTATCTATGACTGTATGTTATTCATTCATGCTTTTTACATGTTCTATTTATATCTGTAAATCAACCAATGAAATCAAGCCACACCCAGCCATGATTAGACACCTGTGTGTCCTTTgaaactatataaactagtgaACCGcggtgtttgtcattataccctgatgaaaacagcttgtctgtcgaaacgttggttatTAAAGTATTGCATCTGAACTCCTA
>XR_005051348.1
CCCTCGTTTTAGTTGCAACTGTTAGCCGGAATGAATACAGCCCAGCTCTCGTCcgcctgacctagtgagagaacTGTACATTTTGACACGATTAAGATTTGGGCAATATTTTGACAGAATGGGACACGCGCACTGCTGTACTGTGCTCCTTATAGTATTCCTTGCGCTACAGCAAGCTGCTGGATTTTGGCTCTTCGATGTCTTTCCATCAAGTTTCAAAACTCAAAACAAAGTGCCAAACAATAGCACTCCGCCGGTTCTTATAGtgcCTGGGACTGCAGGAAACCAGCTTGAAGCCAAGATTGACAAGCCAAGCCGTGTGCATTGGATGTGCTACAAAAAGACAGATGACTTTTTCACACTTTGGATTGACCTGAATATGTTCATGCCAATTGGGATTAACTGTTGGATTGATAATATAAGAATTGTATACAATAGGACAACTCGCAAGTCATCCAATTCTGCCGGGGTGTCTGTGAGAGTGCCTGGTTTTGGACAAACATATACTGTTGAGTTCTTGGACAACCACAAGCTGTCAGGTTATTTTAATAATATGGTTACACATTTGGTCAACATGGGATATGTCCGCAATGAGTCTGTCCGAGCAGCACCATATGACTTCAGAGTAGCTCCGAACGAGCAGGAGGAATACTTTGCACGACTGAAGAAGCTGATTGAGGATATGTACGAGAGGGATCAACAACCACTTTACATCCTGGGCCATAGCATGGGAAGCAATTATATCCTCTACTTCTTATATCAGCAGACCCAGGCTTGGAAAGACAAATACATCAAAGGCTTCATTTCACTTGGAGCACCCTGGGGTGGGGCTGTCAAGACCCTTCGAGTACTAGCATCAGGTGAAAATCTTGGCATCCCACTGGTGTCCAACATCAAGATCCGGGAGCAGCAGCGGATGACCACCACAAACCCCTGGATGCTTCCATTTGAAGAGGTCTGGCCTACAGACCACGTCTTCATCTCCACGCCATTATTCAACTATACCCGCCAGGACTACCAGCGCTTCTTTAAAGACATTGACTTTGAAGATGGCTGGTTCATGTGGGAAGACACCAGAAACTTGACAGCTGGTCTGCCCCCTCCTGGTGTTGAGATGTACTGCTTCTATGGTGTGGGGCTGCCCACACCGGTTACCTATATTTATGACGACCAGTTCCCAAATGCAGACCCCATAGACTATGTGTATGCTGATGGGGATGATACAGTGGACAGTCTTAGCCTCGGTCTTTGTAAACGCTGGAGAGGGAAGCAAGCACAGCCTGTCCATGTCAAGGAATTCAGGTCTATGCCCCACATGGAAATAGTATTAAATAGGAAGGTGATCAATGTGGTCCAGAGTATTCTGGAGGGAAGATATGGTGAAGAGGATTCTACATTGATGAACTGATGAACATCCCATTGATTCCCCACTCATGCAAGATCAGGCCCAGCCGGACCAGCCTCCCAAATCTATAGTGTAAGCTTTTGGGGAGAAAATTATTCACCCTCCCAATATACATACTATTACTGATGCCAGTAGGCTAGCTACGGAGGTGGACTTATACACAATGTACAACCcactaggaacacctgctctttccatgacagactgaccaggtgaatccagctgaaagctatgatctcttattgatgttaCTTCCAACTTCAATCagtgaagatgaaggggaggatacaggttatagaatgatttttaagccttgagataattacCACCCCATAAAATTATTTGCGCCTCTACCAGATGGAAACTAAAAGTGTAATAGCTGTGCTCAATGTAATGGCACTTACAAATGTAGACCCTTCAAACACCCTCAAACAGGGAAAcggatcccaatcaaaggtgttatcatgtgctccactaaggcagttatttgtGTTATAACTtttccttgtggtaaaaattgtGGGTAAAAGACAGCGCAAATTAAAAATAAGAATCAtggagcatcgtagcaccattaggtgcaaaAACTAGACGTACCCAGTTGTGGCCCACTTTTTGGAAGCGAACCACTATTTCGTCCCTTCGTGAAATCgccatcgaacatGCCTATGTAGACAAATTGTATCTATGACTGTATGTTATTCATTCATGCTTTTTACATGTTCTATTTATATCTGTAAATCAACCAATGAAATCAAGCCACACCCAGCCATGATTAGACACCTGTGTGTCCTTTgaaactatataaactagtgaACCGcggtgtttgtcattataccctgatgaaaacagcttgtctgtcgaaacgttggttatTAAAGTATTGCATCTGAACTCCTA

Function

NR:

description
phosphatidylcholine-sterol acyltransferase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597522.2 False 2462 mRNA 0.44 6 60607110 60615212
XR_005051348.1 True 2305 mRNA 0.44 7 60607110 60615212

Neighbor

gene id symbol gene type direction distance location
znf148 znf148 coding downstream 7004 60593527 ~ 60600106 (-)
slc12a8 slc12a8 coding downstream 17771 60560430 ~ 60589339 (-)
heg1 LOC106586449 coding downstream 46814 60545104 ~ 60560296 (-)
LOC118944680 tas2r8 coding downstream 83918 60497574 ~ 60523192 (-)
kansl1l NA coding downstream 143679 60421641 ~ 60463431 (-)
snx4 snx4 coding upstream 5274 60620486 ~ 60633884 (-)
LOC110520306 LOC106586457 coding upstream 44034 60659246 ~ 60682924 (-)
LOC118944682 NA coding upstream 71242 60686454 ~ 60689464 (-)
LOC110520307 LOC106586456 coding upstream 94742 60709954 ~ 60888262 (-)
LOC110520309 LOC106586458 coding upstream 277597 60891843 ~ 60941193 (-)
G281832 NA non-coding downstream 66765 60540132 ~ 60540345 (-)
G281393 NA non-coding downstream 198754 60408064 ~ 60408356 (-)
G281392 NA non-coding downstream 199171 60407197 ~ 60407939 (-)
G281390 NA non-coding downstream 201050 60405795 ~ 60406060 (-)
G281376 NA non-coding downstream 225925 60380979 ~ 60381185 (-)
G281872 NA non-coding upstream 974 60616186 ~ 60616431 (-)
G282125 NA non-coding upstream 415174 61030386 ~ 61030761 (-)
G282179 NA non-coding upstream 493916 61109128 ~ 61110355 (-)
G277749 LOC106586429 other downstream 3017927 57584386 ~ 57589183 (-)
G277673 LOC106586423 other downstream 3203535 57402984 ~ 57403575 (-)
si:dkey-91i10.3 LOC106586420 other downstream 3309348 57270782 ~ 57297762 (-)
G275250 NA other downstream 5195623 55410143 ~ 55411487 (-)
LOC110520227 plekhm3 other downstream 5487898 55068639 ~ 55122013 (-)
G284018 NA other upstream 2099363 62714575 ~ 62715177 (-)
G286522 NA other upstream 4354337 64969549 ~ 64970755 (-)
G286580 marco other upstream 4399047 65014259 ~ 65029736 (-)
G286638 NA other upstream 4439488 65054700 ~ 65075985 (-)
G286953 LOC107579696 other upstream 4619968 65235180 ~ 65235908 (-)

Expression


Co-expression Network