snx4 (snx4)


Basic Information

Item Value
gene id snx4
gene name snx4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 60620486 ~ 60633884 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597526.2
GAAAAGAAAAGGGTTAAAGTGCGCATGCGAGTTTCTGCCTGTCTGCTACATTGCTAACAAGGAAAAACTCAGGAAGAGATGATGGCAGACTCGGGACCCGAGGAAATAGCGGTGATCGGGAACACAGACCTCACATCGGCAGAACTAGAGAACAACATTAAAAACACGATGGTCGAGATTGAGAAATGGACTAGTCTTCTAAGAAAGATGGAGATCAGCGTTGGAGAGGCAGAGAAAAGGACTGGGAAGAATACAGTCAACATGCAGGAGATATACACTGTTTACCTAATTGAGACACGGCCGGTTGATGCTGTGACAGAAGGTATAATCCCAGCCCCAGACTCCTTATGGAGGAGATACAGCGAGTTTGAGCTACTCAGAAACTACTTGTTGGTCACCTATCCCTTTGTCGTTGTTGCCCCGTTACCCGAGAAGAGGGCAGAGATTGTGTGGCACAAGCTGTCAGCGGACAACATGGACCCAGACTTTGTGGAGAGAAGGAGGGTTGGACTGGAGAACTTCCTGCTCCGATTAGCCTGCCACCCAGTTCTCTGCAACGACAAGATCTTCTACATCTTCCTCACTGAGgAAAAAGGATGGAAGGAAATGGTGTACGAGACAGGATTTCAAGCAAAGGCTGATTCCAGGTTGAAAGCTATGAATGCAGCATTCAGGGTGAAGAATCCAGACAAACGGTTTACAGAGCTGAAACACTACAGCGACGagctacagactgtagtctcccAGCTGCTGAGAGTACGGGCAAGGGTAGCAGATCGACTGTATGGGGTGTACAAAGTGCATGGAAACTATGGACGAGTCTTCAGTGAGTGGAGTGCcatagagaaagagatgggagatGGACTACAAAGTGCTGGTCATCACATGGATGCGTATGCTGCTTCTGTAGATGATATtctggaggaagaggagcacTATGCTGATCAGCTGAAGGAGTACCTATTCTATACTGAGGCACTAAGGGCAGTGTGCAGGAAGCATGAGTTGACACAGTTTGAGCTGGAGATGGCTGCACAGGACTTAGCCTCTAAGAAACAGCAGAAGGAGGAGCTGGTCACAGGGACTGTGCGGACGTTCTCACTGAAGGGGATGACCAGTAAGCTGTTTGGCCAGGAGACTGCAGAGCAGAGGGAGGCTAAGTTACAAGTGTTAGAACAgcagatagaggagggagaggaggctgtgaaAGAGAAGAACACCGAGAGCGATGAGTTTGTGAAGACTGCCTGGATAGACATTGAGCACTTTAAAGACCAAAAGGACCGGGACCTGAAGGAGGCCCTGATTAGCTATGCAATCATGCAGATCAGCAGGTGTAAAAAGggaatACAAGTGTGGACCAACGCAAAGGAGTGTTTCAACAAGATGTGATCTTCAGGGCCGAAACAGGCCCTCCAAACAAACAGCAAAACAGAACATGCTTCTTTTCAGGGGACTCCTCCTggggatgcatcccaaattgcactctattccctaaatagtgtgctacttttgaccagagccctgtggggtctgttcactatatagggaacagggtgctttTTGGGACAGATTCCTGGACACAGTCCCTATGATCCTTATGGCAACATTGATCCTGTACGCTCAAGAACAAATAAATAAGAATT
>XM_036974816.1
TGAGGTTGGGAAAAGAAAAGGGTTAAAGTGCGCATGCGAGTTTCTGCCTGTCTGCTACATTGCTAACAAGGAAAAACTCAGGAAGAGATGATGGCAGACTCGGGACCCGAGGAAATAGCGGTGATCGGGAACACAGACCTCACATCGGCAGAACTAGAGAACAACATTAAAAACACGATGGTCGAGATTGAGAAATGGACTAGTCTTCTAAGAAAGATGGAGATCAGCGTTGGAGAGGCAGAGAAAAGGACTGGGAAGAATACAGTCAACATGCAGGAGATATACACTGTTTACCTAATTGAGACACGGCCGGTTGATGCTGTGACAGAAGGTATAATCCCAGCCCCAGACTCCTTATGGAGGAGATACAGCGAGTTTGAGCTACTCAGAAACTACTTGTTGGTCACCTATCCCTTTGTCGTTGTTGCCCCGTTACCCGAGAAGAGGGCAGAGATTGTGTGGCACAAGCTGTCAGCGGACAACATGGACCCAGACTTTGTGGAGAGAAGGAGGGTTGGACTGGAGAACTTCCTGCTCCGATTAGCCTGCCACCCAGTTCTCTGCAACGACAAGATCTTCTACATCTTCCTCACTGAGgAAAAAGGATGGAAGGAAATGGTGTACGAGACAGGATTTCAAGCAAAGGCTGATTCCAGGTTGAAAGCTATGAATGCAGCATTCAGGGTGAAGAATCCAGACAAACGGTTTACAGAGCTGAAACACTACAGCGACGagctacagactgtagtctcccAGCTGCTGAGAGTACGGGCAAGGGTAGCAGATCGACTGTATGGGGTGTACAAAGTGCATGGAAACTATGGACGAGTCTTCAGTGAGTGGAGTGCcatagagaaagagatgggagatGGACTACAAAGTGCTGGTCATCACATGGATGCGTATGCTGCTTCTGTAGATGATATtctggaggaagaggagcacTATGCTGATCAGCTGAAGGAGTACCTATTCTATACTGAGGCACTAAGTGAGTTTGTGAAGACTGCCTGGATAGACATTGAGCACTTTAAAGACCAAAAGGACCGGGACCTGAAGGAGGCCCTGATTAGCTATGCAATCATGCAGATCAGCAGGTGTAAAAAGggaatACAAGTGTGGACCAACGCAAAGGAGTGTTTCAACAAGATGTGATCTTCAGGGCCGAAACAGGCCCTCCAAACAAACAGCAAAACAGAACATGCTTCTTTTCAGGGGACTCCTCCTggggatgcatcccaaattgcactctattccctaaatagtgtgctacttttgaccagagccctgtggggtctgttcactatatagggaacagggtgctttTTGGGACAGATTCCTGGACACAGTCCCTATGATCCTTATGGCAACATTGATCCTGTACGCTCAAGAACAAATAAATAAGAATT

Function

symbol description
snx4 Predicted to enable phosphatidylinositol binding activity. Predicted to act upstream of or within protein transport. Is expressed in notochord. Orthologous to human SNX4 (sorting nexin 4).

NR:

description
PREDICTED: sorting nexin-4 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597526.2 False 1646 mRNA 0.48 14 60620486 60633875
XM_036974816.1 True 1409 mRNA 0.47 12 60620486 60633884

Neighbor

gene id symbol gene type direction distance location
LOC110520303 LOC106586453 coding downstream 5274 60607110 ~ 60615212 (-)
znf148 znf148 coding downstream 20380 60593527 ~ 60600106 (-)
slc12a8 slc12a8 coding downstream 31147 60560430 ~ 60589339 (-)
heg1 LOC106586449 coding downstream 60190 60545104 ~ 60560296 (-)
LOC118944680 tas2r8 coding downstream 97294 60497574 ~ 60523192 (-)
LOC110520306 LOC106586457 coding upstream 25362 60659246 ~ 60682924 (-)
LOC118944682 NA coding upstream 52570 60686454 ~ 60689464 (-)
LOC110520307 LOC106586456 coding upstream 76070 60709954 ~ 60888262 (-)
LOC110520309 LOC106586458 coding upstream 258925 60891843 ~ 60941193 (-)
LOC110520310 LOC106586459 coding upstream 318972 60952856 ~ 60957863 (-)
G281872 NA non-coding downstream 4055 60616186 ~ 60616431 (-)
G281832 NA non-coding downstream 80141 60540132 ~ 60540345 (-)
G281393 NA non-coding downstream 212130 60408064 ~ 60408356 (-)
G281392 NA non-coding downstream 212547 60407197 ~ 60407939 (-)
G281390 NA non-coding downstream 214426 60405795 ~ 60406060 (-)
G282125 NA non-coding upstream 396502 61030386 ~ 61030761 (-)
G282179 NA non-coding upstream 475244 61109128 ~ 61110355 (-)
G282206 NA non-coding upstream 509462 61143346 ~ 61145221 (-)
G277749 LOC106586429 other downstream 3031303 57584386 ~ 57589183 (-)
G277673 LOC106586423 other downstream 3216911 57402984 ~ 57403575 (-)
si:dkey-91i10.3 LOC106586420 other downstream 3322724 57270782 ~ 57297762 (-)
G275250 NA other downstream 5208999 55410143 ~ 55411487 (-)
LOC110520227 plekhm3 other downstream 5501274 55068639 ~ 55122013 (-)
G284018 NA other upstream 2080691 62714575 ~ 62715177 (-)
G286522 NA other upstream 4335665 64969549 ~ 64970755 (-)
G286580 marco other upstream 4380375 65014259 ~ 65029736 (-)
G286638 NA other upstream 4420816 65054700 ~ 65075985 (-)
G286953 LOC107579696 other upstream 4601296 65235180 ~ 65235908 (-)

Expression


Co-expression Network