LOC110520309 (LOC106586458)


Basic Information

Item Value
gene id LOC110520309
gene name LOC106586458
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 60891843 ~ 60941193 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597535.2
TATTTTTAACACAGTTGCCTGCCGTGTTCTGCCCTGTCAacttctctctgctctgtgtctcCTGCCTGTTGAGTGTCAGTCAGTCCATTGACGCTAGTGGCTCTGCTGTGGGACTGGAGTGAGTGGAACTGGGCCAGAACACCACTGATGAAACATACACCTTTCAACGGAACTGGATTTTATAACACCTGTTGGACAAGGGGACCGAGGGGACTCTCTACTGTggttactctctcctctctaccttcaaAGGAAATATTGAAGGACTGTTGCTGTTGAGTTTTGAAGTCCCCAGAGACTGAAGTGAGAGAATAGGATTTTCAGGATccaggaagaagagaggggacagTAGAGGCTGTAAAATTTCTTACGTTTGAACGGGGGAGACAATGTCTAACAAAGGTGACACTGGAGGTCAACCTGCTGCCACAACAACAATCAGCACTATTGCCGTGCAGGCTGGCGACACTCAGATTATTGTCACTGTGCTCAAGTGTGGGGAACTTGTAAAGCTGCAGTTGACTGAAGCCAATCCCAACCTGCTGGAGATCGGCAGCAACCAGGACGAAACAAAGAAACTGCTGGATGAACACCAGCAGCTCCTGATCAAACTCAAGAAACATGAGGCAGGCGTGTGGGCTCTGCTGGAAGAGGCAGACAGGATGgcaaaggagaagaaggagaatgaAGGGGAGGTGTACGAGGCCATGGCTAACTCGCTGAGCGATGCCTGGAGGACCCTGATCTTAATGCTAGAGAAGCGCAGGTCGCTGTTACACCTGGCCTCAGAGTTCTTCGACAGGGCCCTGGAGTTTGCTATCAGAATAGATGAGGGAGAAGAGTTCCAGAGCAGAGAACAGGAGCTGGCAGATGCTGAGTGTCTGAAAGAACTGCTCCTGAAACACAGTGTTATGAAGAGAGgtCTCCTGGAGAAGTCCATGCTGGTTCTGAATAAGAGCCGTGATCTTCTAGACTTCCTGAGAGAGTTCCAGACAGAGGAGGCTCTACAGAGGAGCGAGGCTTTGCAGGGGGCTCACAGCAGCTGTGGCCGGGTGGAGAGTCTTATGGAGATACTGCAGgacaggaggagacaggtagACCAGCACATGAAGCAGCAGCTCCTTGACCTGGAAGTCATCCTCAGCATCTACCAATGGGATCGGCAGGAACAGGAAGTAACCCACTGGTTCAAGAGCAATGCTGACTTGTACTTTCAAAGAGATCATTTGGGCTCAACTCTCACTGAAAATGAAGAGCTCCTTCGGGAATACAAGAAGTTTGAAGAGAAAGCCAAGGACTGGAGTGAGTTGGTGGAGAAGTTGCTGGCCAAGGCCTCAGAGCTGCTAGCGGGGGAAGCAGAGGGCCGGGCTGAGACGGGACATGTCTCTGAGAGGAGTCTGGCTCTCAGAGCCCTGCACGAGCACTTCTGGAACCTGATGATGGGCCGCCTCGCACACTTACAGGAGAGCAATGCGTTCTTTAGCAGCGCCAACAAGGCTTTTGGGGTCCTGGGAATTGTTGAGAGTAAACTAAAGGGGTTGAAGAGCCAGACACTACGGTTGCCTAAGTTGGCCAAAAAGCACGAGGAGCTGCTGCGAAGCATTAAAGAGTCAGCCACCGACCCTCTTCAGAGAGGACAGCTCATACTGCAGAAGGTTGACCCACAGAGCACCCAAGTGGAAGGGGTGAAAAGGATGCTGGGATATGTGAGAGACCGGGTTGATACTCTGAGCCGGGAATGCCACGCCCACCGAGCACTGGCAGCCAAGAGACAGCAGCTGGTGTCCACATGTGAAGACCTCATAGACAAGATCTCGGTGTGGCTAAAGAGCAGCAACTGTTTCTTCTCCAGCAACACTGAGCCAGGCTTCCTGCTCTCCCAGTCTGAAGACATGCTCAACAAACACCTGGAACTCTCCTCACAAACACAGGAAACAGGCATTGAGGCAGATGCCATGGCAGAACAGATAACGGAACTGAAAACACTGGAGTGTCCTGAAGCCACTGAGTTCTCCAACAAAGCATCACTGTTAGAGGAGGAGCTGAAGACAGTCACCAGAAACATCACATCCCGCATTGACAATATCCGACCATACGTGGGCTTCTTGCGAATTGCTGAGGAGGTGGATGAGCAGATGCAGAGTCTACATGAGAGCTATAACTGGaagccagaggaggaggagaacaaggAGAGTGGCGTCACGTCGAAGGAGATCGCTGATGCTAAGTGGCAGTCCATGTTGGAACGCTTCCTTGCCATGCAGGACCTGGGAAACAACTACATCAATTCATCTAACATGGTGAGTGAGGACCTGAACCTGAATGTGAGGGCAGCCATCAGTGTGGTGGAAAAGACCATGGAGGAGCTGAACAAGAAGAAGATGGACCTGTCAGACCTCTGGACCTCCTGGCAGCTCCACGTCAATCAGGTGAAGTCCATCAAGAAACAGTGGAAGAAATACAAAGAACAATTGAAAAAGACTGTTCATGACCTGAAGAGTGTGGAGGAGGTTCTTGTCCCGACTTCTAAAGTAGATCTGGGAAGTGACCTTCAGACTGTGTCAAAGCTACTGGAGAACTTTAGCCTAGATAAACCCCAGTTCCTGCAACTGAATGCGGAGGTAGAATACatggtgaagacatcagaactgtTGGCACTGAAAGGAATTCCTATCAAAGAGAAGAGTGAGAAGGTCATAGAGATGCTTCACCTTCATCAGAGAGTGAAAGATAACATCAAAGAGTATGAGTCTGTCCTCAAGATGGCTGTGAAGTTCCACCAGCTTTATGAAGAGTTGGATAAGCTGTTAACGTCGGAGCCTGTGACAGGGTTCAGTGAGACGAGCCAGGCTAAGATCCAGCTGATCCAACACCAGGACAGACAGAGCCACATCAGacacctgtacaagctggctatCTCTCTGGGAGGAGACATCAGCAACACTGTCCAGCAGTCGCATGCCTCAGGGTTTACAGTGCGGCGTCTGCAGGAGCgtctggagagactggagagaggttGTGTGAACTGGAGCACTGAGGCCAACAGGTGTGAAGAGAGCCTCACCAGCAACCTGCGCTACTGTGTCTTCAAGGAGGAGATCACTGAGCTGAGAGAGTCATTCAAGGATCTCAAGAAGAAATTCAACAATGTGAAGTTCAATTATATGAAGAGAAACGACAAGTCAAGGAACCTCAAAGCAGTTAAAAACCAAATCCAGCAGATAGAGATTTATAATGAAAAGTTACAGGTATTGAAGAAGAGAATGCAGGCTTTCACAGTGAAAGTGACATCCAGCACAGAGAAGCATCTGAAAGGCAGTAGccccagagagatagaggatgcTGTCAATGAGCTACAGAGACAGCTGGGGGACTTTGACAAGACTGTGGAGGAGTACAGAGGGAACCTGGACATGAGCGTGAAGCTGCAGCAAGCTATGGAGGAGTATCAGTTCTGGTGTGATGAAGCAAGTGCTACAATTGTGAGAGTAGGGAAGTACTCTTCCCAGTGTAAGACCAGGGAAGCAGTGTCTATTCTTTACAAGCAGTTTGAGAAGTTTGTTTGGCCCACTGTGCCCCAGCAAGAGGAGAGGATCAGCCAAATCACAGAATTGGCTGTCCGTCTGCATGGTGCTGAGGAGGGAAAGAAGTATATGGAGAAAACTCTCACCAAACACAATGAGATAGTGGAATCGATAAAGGAACTTTGTAATGGATTAATGGATTTGGAGGCTAAACTACAGAATGAGGCTTTGAAGGAGGAgcctgaaataaaaaaaatgcataaTGTCATACAAGAGGAAAACAAACAAGAACAAAAATCAAACCAAGAAACAGAGAAAGCTGAGATGTACCCCCAGGAGTCTCTTGATGTTTCTGAGCTGAAAGAAACTGGACACACTCCTGAACTAACCATGGGAGGGAACGGGAAAGAGGTACCCATCAAAACATTAGAAAATACAAGAAGCAAGAAACCTCGTGTCCGCAAAACAAGGAGCCAGGACCTTCCAGACAAACACCACCCAGAACATCACAACAAAGTGTTATCAGAGAGCAGgTATCACACACAGAAGGCGTACTCAGAGATGAGCAGAGTGGAGACGATCACCAGCAGGTCAACACAGGAGAGTAAAGAGCAGCTGAGCACCTCTTTCTGCTGCACACACACCTTCAACCTGTCCTGTTCACCACTGGAGAGGGACAGGAAAGTCCATGTGCTCCAACAGGCAGGGATCAAGTCTCTGGTCACCTctcctactcttcctcctcccccagcCTTCGCTTCAGCTCCCAGCTTCTCTGATATACAGAGAGAGTTCCAGAAGAAGGAGAGGCAGGGCCCTGCTCAGAGGAACTTCCCTGGGTTTCATACTTCTAATACTGATCAGATTGGTCCTCTTACAGGCGAGCCTTTCTCCCAAGATGTATCACCCCTGCTGCCTCCCGCAGGTGGTCTGACAGAGGGGAACCTTCAGCGGCATAACCTCATGACAGAAGAGTCCCTGTCCAATGACGAATATGAGTGCACTTCCCCCGACGACATCTCTCTGCCCCCACTCTCCGAGACCCCAGAGTCCAACATCGTCCTATCTGAGAATGACCTGGACCTGGATGGTTTCTGTCTCAGCTCCCAGTCCCACACCATTCACATCAACCAGTACAGCCACCAGTTACGCTCCACACGTAATAATGAAAACAACAGCCAGAGCCAACAGAGGATCAGAGAGCAGACTGAAAGCTGCCACTCTCCTACATTCGGCCTCAACACCAAGTTCAGAGAGAAGTCCTCTTCTTTCGTCCAGAGCACCCTGACTGTCCCAGCACCGATCCTGGTCTCAAACACACTCTCCAGTATTCTGAAAAGCAAGGGTATCCCCAACCTCCCTAATCTCCCACCAGTCGGCCCCCTAGGCCTAAACGAGTGCCACCAGACCGTGTATTCCGTGCATGAGAGCTCTGTCACAGAGACGCAGGAGTGTGTGCATGACCCAAGCAGCGTGATGGTCCGAGGAGCTGCCGTGCCCTCTGCATTCCCCGCTGCTGCCACCACTCGTTCTCTTAACACGCATGCTACCCCCTCCCCATTAACCACCACAGCAGTCACACCCACAGACCCGGGCCAAGACCCAGACCTGTGCAATCCAACAGCCATCAAAGAAGAGATCAGGCTGCCTGGTACCAGCCAGTCCGTGGGGAGCACCCTAGCAGGCCAGGGCCCTCCTCACTTCTCCAAACTACTGTCTAGTCCCACAGTTATGGAGGGATCGCCTGTGACCCTGGAAGTGGAGGTCACTGGATTTCCAGAGCCTACTTTAACATGGTTCAAGAATGGAGAGAAACTGACCAATGATGAGCACATAGAGCTGTCACAAAAAAAAGGCAAACATGCATTGTTCGTACAGAAGGTCACTGAGACCGACGCAGGCCTCTATGCGTGCCGGGCCGTCAACCCAAGCGGCACCCTGTCCTCTAGTGCCGCTCTTCAGGTGAAAGCACGTAACAACAGCTGTCCCGAACCCGACTACGCTCTTCTCAAGCTGGACTGGCACACTTGTTTTGGTACTCTGTGTCTTCTCCTGTACCTCCTGTACTCATTGCTGTTATGAAGTAATACAAAATATTATATCAAGCTTTTCACTGCCAGACCCTTTTCCACTCTCACTGTAATGGAAAGTAGTGTTGATGTTGCACAGTAGTACACTGGATAACCCTCATTTTAACTGTGAAATCTGTAAGGCTGCCTGAGGTGTCACTTCTGAACCTGATCCCAATAACCACTTACATACTACACCCAAAACACCAACTGTGTGTATGAATGTGAGCTTAATTTATTTGTAGTTTAGACAATTGTTTAATTTGTGCATAAAACCAAATTATATCTCAACTTCAGTCAAAATATCCTTAATATTATACTTATATTTTATCTGCTTTTTATCTAAGTTAGCGCATTTGATTCTGTGCCTCTATGACCAAATGTCCTACAATTAATGAGAGAATACGGTATATTTATTAATAAATGCTAAAAACAGTAATTTAGCAATTTCTTCAGTTTCAATACTGTATTACAGTGCATTCGCAAACtattaagaccccttgactttatttcacatttagtttttttcatcatcattgtacacacaataccccataatgacaaagcaaaaacaggtttttagacatttttgcaccccccaaaaaatt
>TU319749
accccccaaaaaattaaaaaactgaattatcacatttacatcagtactttgttgaagaacctttggcagcgatcacagcctggagtcttcttgggtatgatgctacaagcttggcacatctgtatttggggagtttctccaattcttctctgcagatcctctcatgctctgtcaggttggatagggagcgtcgctgcacagctattttcaggtctctccagagatgtttgatcgggttcaagtctgggctatggctgggccacttaaggacattcagccacttgttctgaagccactcttgcgttgtcttgtctgtgtgcttagggtcgttgttctgttggatggtggaccttcgccccagtccttgcagctctacggacaattccttcaacctcatagcttggtttttgctctgacattcactgtcaactgtgggaccttatgtagtcaggtgtgagcctttccagattatgtccaatcaatttaattttccacaggtggactccaatcaagttggagaaacatctcaaggatgatcaatggaaactggatgcaccagagctcaatttcgagtctcatagcaaagg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597535.2 False 6201 mRNA 0.49 26 60892809 60941193
TU319749 True 587 lncRNA 0.46 3 60891843 60892823

Neighbor

gene id symbol gene type direction distance location
LOC110520307 LOC106586456 coding downstream 4547 60709954 ~ 60888262 (-)
LOC118944682 NA coding downstream 203345 60686454 ~ 60689464 (-)
LOC110520306 LOC106586457 coding downstream 209885 60659246 ~ 60682924 (-)
snx4 snx4 coding downstream 258925 60620486 ~ 60633884 (-)
LOC110520303 LOC106586453 coding downstream 277597 60607110 ~ 60615212 (-)
LOC110520310 LOC106586459 coding upstream 11663 60952856 ~ 60957863 (-)
LOC110520311 LOC106586460 coding upstream 33727 60974920 ~ 61013177 (-)
LOC110520312 LOC106586462 coding upstream 93686 61034879 ~ 61191873 (-)
LOC110520314 LOC106586461 coding upstream 261710 61202903 ~ 61254638 (-)
LOC118964366 NA coding upstream 329323 61270516 ~ 61270572 (-)
G281872 NA non-coding downstream 276378 60616186 ~ 60616431 (-)
G281832 NA non-coding downstream 352464 60540132 ~ 60540345 (-)
G281393 NA non-coding downstream 484453 60408064 ~ 60408356 (-)
G281392 NA non-coding downstream 484870 60407197 ~ 60407939 (-)
G282125 NA non-coding upstream 89193 61030386 ~ 61030761 (-)
G282179 NA non-coding upstream 167935 61109128 ~ 61110355 (-)
G282206 NA non-coding upstream 202153 61143346 ~ 61145221 (-)
G282977 NA non-coding upstream 252454 61193647 ~ 61211320 (-)
G282986 ube2e3 non-coding upstream 391528 61332721 ~ 61340510 (-)
G277749 LOC106586429 other downstream 3303626 57584386 ~ 57589183 (-)
G277673 LOC106586423 other downstream 3489234 57402984 ~ 57403575 (-)
si:dkey-91i10.3 LOC106586420 other downstream 3595047 57270782 ~ 57297762 (-)
G275250 NA other downstream 5481322 55410143 ~ 55411487 (-)
LOC110520227 plekhm3 other downstream 5773597 55068639 ~ 55122013 (-)
G284018 NA other upstream 1773382 62714575 ~ 62715177 (-)
G286522 NA other upstream 4028356 64969549 ~ 64970755 (-)
G286580 marco other upstream 4073066 65014259 ~ 65029736 (-)
G286638 NA other upstream 4113507 65054700 ~ 65075985 (-)
G286953 LOC107579696 other upstream 4293987 65235180 ~ 65235908 (-)

Expression


Co-expression Network