LOC110520315 (ube2e3)


Basic Information

Item Value
gene id LOC110520315
gene name ube2e3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 61331359 ~ 61370875 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974822.1
CACCTGTCTCTTCTAAGCCAGTAATGCAGCACCTCCTCTCCTTCCGATTCTCCAATGTTCACAGCTTGGCCGGAGCTCGTCGTCTTCCCGGCTACAATTCCACCGGATTTTAAACACTCCTACCCGGCCTAAATCAGGACGAGACCACGCTAAAGGGGGAATCAACATGTCCAGTGAAAGACAAGGGCGGTCAGATGATGAGAGTCCAAGCACCAGCAGTGGGAGTTCTGATGCGGACCAGAGAGACCCGGCAGTGCCGGAGCCCGAGAGAAAACAGCAGCCCGCCACACCCCCTCAGCAACAGAAGAAACCTACCAAATTATCCAGCAAGACTACCGCCAAGTTGTCCACTAGTGCTAAAAGAATCCAGAAGGAGCTTGCTGAGATTACTCTGGATCCACCACCTAACTGCAGTGCGGGACCCAAGGGAGACAACATCTATGAATGGAGATCCACCATCCTGGGACCACCAGGCTCGGTGTACGAGGGAGGGGTCTTCTTCTTAGATATCACCTTCTCATCCGACTACCCCTTCAAGCCACCAAAGGTGACGTTCCGCACCAGGATCTACCACTGTAACATCAACAGCCAGGGGGTGATCTGCCTGGATATCCTGAAAGACAACTGGAGCCCCGCCCTCACCATCTCCAAGGTGCTGCTGTCCATCTGCTCCCTGCTCACAGACTGCAACCCTGcggACCCTCTGGTTGGTAGCATTGCCACTCAGTACCTGACCAACAGAGCCGAGCATGACAGGATAGCCCGACAGTGGACCAAGAGATACGCCACATAGAGGTCACGACTCCCGACCCCGTCCTGTCTGACCCCCCGTCCCCCCAGCCCCTCTGCCTGCAGTGTGAAGGTCCCGGAGGCGACGTCACATTGTGCAACAAATCTTTATAGCCTTTACAATATGGACTTCTGTGTATCTGTCTGATTACTGATTCTACTCCTCCACATTTTACCCTGCTATGAGGACTGGGTCTGAAGAGAGACCGAGAGATAAGCAAACCCCAACAGGCATTGTCTCACGTCAGATAGCGCAGCTGCGTCTCCGTCTGCACTGCTGATAGTTCATGGCAACACAGGGCGTTAGAATGACGCCATCTGTCGGAAGACAATGCCCAACAACAGGTAAATGTATATTGGAGTAGAATTTTGTAGCTGTAGATTTTAGCTATGTTTAAATGCCTCTACTTGCAAGTCTTGCTTCTTTGGGATATTAAAAAATAACATGTATTTTGTGATGTAATAAAGGAAACTATTCCTCAACCAAATATGATGGTGCATTTTAGCCTTCTCCATTATCTGTATGAAGTTAAAGAAGAAAAATCAACTAGCTGTTGTAGATTATTAGAGAAGATGATGTCATTTATATGAACGCCAGACACCCATTTCCACTTACGTAGTTACATTATACTGTTGTGACTGTTTTACCTTTGTCAATTTGTAATGAAAACAAGATTTCATTTCAACCTTTTTGTAGTGCAGCAAAAGATGAGCCACCACTGTAACATCCCCAAAACACAATAAACTTGTCCCAAGGGTT
>XM_036974823.1
AGTCTAGTTTAGGCGGAGAAAGATCGTCCTTTCTTGTTTTTTTCAGCGCTGTCGTGTTAGAGGGAGCTTGCTCAGAACTGACTTCATGCATCAGTTGACTTGGTACACCATGCTGATACTGGAGTCTCCTACCATAACAAACCTTGCCGATCTACAAGGGACTCTAAGGGGGAATCAACATGTCCAGTGAAAGACAAGGGCGGTCAGATGATGAGAGTCCAAGCACCAGCAGTGGGAGTTCTGATGCGGACCAGAGAGACCCGGCAGTGCCGGAGCCCGAGAGAAAACAGCAGCCCGCCACACCCCCTCAGCAACAGAAGAAACCTACCAAATTATCCAGCAAGACTACCGCCAAGTTGTCCACTAGTGCTAAAAGAATCCAGAAGGAGCTTGCTGAGATTACTCTGGATCCACCACCTAACTGCAGTGCGGGACCCAAGGGAGACAACATCTATGAATGGAGATCCACCATCCTGGGACCACCAGGCTCGGTGTACGAGGGAGGGGTCTTCTTCTTAGATATCACCTTCTCATCCGACTACCCCTTCAAGCCACCAAAGGTGACGTTCCGCACCAGGATCTACCACTGTAACATCAACAGCCAGGGGGTGATCTGCCTGGATATCCTGAAAGACAACTGGAGCCCCGCCCTCACCATCTCCAAGGTGCTGCTGTCCATCTGCTCCCTGCTCACAGACTGCAACCCTGcggACCCTCTGGTTGGTAGCATTGCCACTCAGTACCTGACCAACAGAGCCGAGCATGACAGGATAGCCCGACAGTGGACCAAGAGATACGCCACATAGAGGTCACGACTCCCGACCCCGTCCTGTCTGACCCCCCGTCCCCCCAGCCCCTCTGCCTGCAGTGTGAAGGTCCCGGAGGCGACGTCACATTGTGCAACAAATCTTTATAGCCTTTACAATATGGACTTCTGTGTATCTGTCTGATTACTGATTCTACTCCTCCACATTTTACCCTGCTATGAGGACTGGGTCTGAAGAGAGACCGAGAGATAAGCAAACCCCAACAGGCATTGTCTCACGTCAGATAGCGCAGCTGCGTCTCCGTCTGCACTGCTGATAGTTCATGGCAACACAGGGCGTTAGAATGACGCCATCTGTCGGAAGACAATGCCCAACAACAGGTAAATGTATATTGGAGTAGAATTTTGTAGCTGTAGATTTTAGCTATGTTTAAATGCCTCTACTTGCAAGTCTTGCTTCTTTGGGATATTAAAAAATAACATGTATTTTGTGATGTAATAAAGGAAACTATTCCTCAACCAAATATGATGGTGCATTTTAGCCTTCTCCATTATCTGTATGAAGTTAAAGAAGAAAAATCAACTAGCTGTTGTAGATTATTAGAGAAGATGATGTCATTTATATGAACGCCAGACACCCATTTCCACTTACGTAGTTACATTATACTGTTGTGACTGTTTTACCTTTGTCAATTTGTAATGAAAACAAGATTTCATTTCAACCTTTTTGTAGTGCAGCAAAAGATGAGCCACCACTGTAACATCCCCAAAACACAATAAACTTGTCCCAAGGGTT

Function

symbol description
ube2e3 Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in protein K11-linked ubiquitination; protein K48-linked ubiquitination; and protein K63-linked ubiquitination. Predicted to be active in nucleus. Orthologous to human UBE2E3 (ubiquitin conjugating enzyme E2 E3).

NR:

description
ubiquitin-conjugating enzyme E2 E3

GO: NA

KEGG:

id description
K20217 UBE2E; ubiquitin-conjugating enzyme E2 E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974822.1 False 1549 mRNA 0.48 6 61331359 61370875
XM_036974823.1 True 1562 mRNA 0.48 6 61331543 61370875

Neighbor

gene id symbol gene type direction distance location
tgfbr2l LOC106586454 coding upstream 677046 60634539 ~ 60654313 (+)
LOC118964303 NA coding upstream 948007 60382674 ~ 60383352 (+)
myl1 LOC100135947 coding upstream 1045279 60277245 ~ 60286080 (+)
LOC110505381 NA coding upstream 1061460 60267642 ~ 60269899 (+)
erbb4b LOC106586446 coding upstream 1279065 59870559 ~ 60052294 (+)
LOC110520316 itga4 coding downstream 105001 61475876 ~ 61505428 (+)
LOC110504376 LOC106586465 coding downstream 219183 61590058 ~ 61647253 (+)
LOC110520321 LOC106586467 coding downstream 277830 61648705 ~ 61663408 (+)
LOC110520324 LOC106586470 coding downstream 402558 61773433 ~ 61832413 (+)
LOC110520325 LOC106586471 coding downstream 465790 61836665 ~ 61841206 (+)
G282245 LOC106582271 non-coding upstream 107377 61206640 ~ 61223982 (+)
G281976 NA non-coding upstream 303719 60991906 ~ 61027640 (+)
G281958 LOC105896813 non-coding upstream 308300 60967569 ~ 61023059 (+)
G281970 NA non-coding upstream 344220 60986538 ~ 60987139 (+)
G281957 NA non-coding upstream 364721 60966328 ~ 60966638 (+)
G282351 NA non-coding downstream 2853 61373728 ~ 61374361 (+)
G282350 NA non-coding downstream 3727 61374602 ~ 61374869 (+)
G282357 NA non-coding downstream 10349 61381224 ~ 61381473 (+)
G282373 NA non-coding downstream 26910 61397785 ~ 61398000 (+)
G282374 NA non-coding downstream 27170 61398045 ~ 61398461 (+)
G281996 NA other upstream 294254 61033766 ~ 61037105 (+)
G281714 NA other upstream 437581 60891524 ~ 60893778 (+)
G281591 LOC106586456 other upstream 574009 60740239 ~ 60757350 (+)
G281141 NA other upstream 1040792 60287388 ~ 60303967 (+)
G280315 NA other upstream 1276942 60052716 ~ 60054417 (+)
G282707 il-1rii other downstream 586513 61957388 ~ 61964066 (+)
LOC110520339 lrrc63 other downstream 822729 62193287 ~ 62200069 (+)
LOC110520346 htr2a other downstream 996739 62367489 ~ 62408857 (+)
LOC110504398 LOC106586506 other downstream 1335456 62705451 ~ 62712740 (+)
G284313 NA other downstream 1645451 63016326 ~ 63022591 (+)

Expression


Co-expression Network