LOC110520316 (itga4)


Basic Information

Item Value
gene id LOC110520316
gene name itga4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 61475876 ~ 61505428 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974824.1
TTTGTGAAGTTTCACGTGACGGAATTTAGTCATGAGCCTAACGATGTGAGGTTGCGCACAGGCAGAACGACCGACGCATGAAGAAGCGCAACAGGAGTTGAGCGCGCCCAGTCTCTATTCAACTCTATCCAAATACAATTCTAAAGTTGGTATTGGGATGTACGACTCTTCTCTGTTTCCGTGGATTTGAATAAACgacgtttttattttattttgttttcatctgCCTTCACTTGTAATCTCTTCGTGTTGGAAAAGTTGGTATTTGTTTTACAAAAATGGAGCGAAAAACGCCGGGCAATCTTTCTTGCTGTTGGAGCTTTCTTCTCGCGTACTTCTGGTGCTGTAATCTCACCGAGTGTTACAATTTGGATGTAGACCACCCGATTAGTTTCAGTGGACCAAATGGATCTTTATTTGGATATTCTGTATTGTTACACAAGAACCAGAAAAACACATGGTTATTAGTCGGAGCTCCAGTTGCGAATTCATCTTCCTACCCAGCCGTAAAAAAACCAGGAGCAATTTATAAGTGCAGCATCTCGGACAAGAGAGAATGTCAACAAATATCAACAGGTGTGGACAGTTGTGGGAAGACATGCTTCTCTGAGAGTGACAACCAGTGGCTCGGAGTCAGCCTGTCCAGACAGCCTCGTGATGGCCATGTATTGGCATGTGGGCATCGTTGGAAGAACGTGTTCTATTCCAGGAAAGAAAACCAGAACAAGCTGCCTCATGGTGTCTGTTACAGATACGAGGCTGACCTCAAACAGTCTCAACCACTCATCCCATGCTACAAAGATCACCAACGGAAGTTTGGTGAGGACTATGGATCATGCCAAGCAGGGATATCCAACTTTCTGACTGAGGACTTGATAATTATGGGAGCCCCAGGGACATCGTACTGGACTGGATCTGTCCTGGTCTACAACACCTCCAGCAGGGTCCTGTCTGCCTATGTGGATGACAGCAGCACTGTCCTCTATGGCAGTTACCTGGGCTACTCGGTTGGGGCCGGCCACTTCCTCCACCCTGACTCCACAGAGATTGTTGGCGGTGCGCCCCAGCACGGGCAGACTGGTAAGGCCTACCTATTCAGAGCTGAAGAAAACATGCTGAAGATAATCAGTGAAGTCAAGGGCAGCAAGCTCGGCTCGTATTTTGGTGCCAGTGTGTGTGCTGTGGACCTGAATGGAGATGGCCTGTCTGATCTACTGGTAGGATCTCCCATGTACAGCACAGTGAGAGAGGAAGGACAAGTCCATGTCTACATAAACCAAGGAGCCGCTAATATGAAGGAAGCAGAGTTTCAGTTGGTGGGAAGCAACTCGTATGCTGCCAGATTTGGGGAGACCATAACTGATCTGGGAGATATTGATGATGATGGCTTTGCTGATGTGGCAGTGGGGGCTCCGCAGGAAGAAGAGCTGCGTGGGGCTATATATATCTACAATGGGAGGAAAACAGGGATCTCTCAGACCTTCTCTCAAAGGATCACTGGCTCTGTTCTGGGTAATGAGTTAAAGATGTTCGGCCAGTCTGTGTCAGGAGGCATCGATGTTGATGAAAACGGTTACCAAGATGTAGCAGTAGGGGCCTTCCTCTCAGACTCAGCTGTTGTTCTGAGGACTCGTCCAGTAATAGTGGTAGAAGCCTTCATGCCCCTGCCTGTCAGTGTAGACCGCTATGTAGCACTGTGTTCTGACAACGGTCTTCCTGCTGTCTGCATCAATGCTACAGTCTGCTTCAGGGTCCATGCTCGACACTTCACCTCTTCAATAGTGCTCCAGTATAATCTGACAGCAGACACGCAGCACAAGGAGTCCTTCCCCTCACGTTTCCATTTCCACGGAAACGGGACGTCCAACGCTACAACAGGGCGGGTCAAGACCAGACACGACCAGCTGACCTGCGTCCCCCACCAGGCCTTCATAAGGAAAGATGTCCGAGATATCTTCACACCCATCCATTTTGAGGTTTCGTACACCCTCAAAGAGCACACTGTCCATAACGGAGGATCCACTTTCCCTGCTCTGAAACCCATACTGCAGCAGAGAGGGGGGCACGGTAACCTGGTGGCCAATAAGACAGAGTTTGCTCGGTACTGTTCATTGGCCAACTGCTCAACCAATCTACAGGTCTCTGCTCAACTGGTGTTACCACAGAGACACAACAACATGCCGTACTTTGCACTTGGCAATGGGAAGACCATCATGTTGAACACAACCCTGGTGAACACGGGAGATGATGCATTCCTCCCCAGACTCCAGCTCCGATTCCCCAGTAACCTGCACTACATCAAAGTGCTTGATGCAGAGGAGAAGTTTGTGAGCTGTGACATTTCAGAGGAGAACAAGACAATAGTAGGAGTGGATTGCAGTGTGGGAAACCTATACCTCAGCTCTGGGGCCAAGGTCAATATCAGTTTTCTGTTGGATGTGAACCAGAGTAGTAGTGTTGGTGACGTTAGCATCTCCATCAACGCTAGTGGGGACAATTATGAAAACGAGGATCTTCTGCATGACAACTCTGCCACTCTGATGTTACCACTGAGATATGGAGTACATGTCAACATTCATGGGTTTATGACTCCAACATCCTTTGTATTTGGTGACCAGGCACCTATTCCAGTTGATTGCTACACAGAGACATTCAACTACACTTACAAGGTTGTCAATATTGGTCCAAGCAAATCTCTCAACACGATAGTGGAGATTGATATTCCCAAGATCCTGTCACCATATCCATACAGATTACTCCACGTCACAGACTTCCATACGTCTCTTGGAGAATGCTCCATTCGAAACGACTCCATTGCGGTGGAGGATGCCTGTGAGGTGCCACAATCCTCTTTCATCAAAGaactggtcttcttcttctccaaAAACAGCAAACGCAAAATGTTCTGTGCCTATGGTGATGACCTGTGCCTGACTCTGGAGTGTAGACTAGGAGATATGGACATTGGGAAAGAAGCCACCATTCACATGGAAGTGAAGTTGAATCCCACCGTTCTACAGCTCTCACCTGGACGTCATGGAGTGATGCTGATGGAGAGTACTGGCATCATCACATCACCAAGGGAGGACCCTCAAACCATCATCCTACAGAAGATCCCTATCGCTCAGGTTGTGTTGGAGGCCCACTTCAGCCAGAAGCCTCAGGCAGCAGTGGAGGTGTTTATCATTGTAGTGAGTCTAGTGGTGGGACTCCTGATCCTGGCCCTGCTCATCTTCGCCCTCTGGAAGATTGGTTTCTTTAAAAGGCAGTTTAAGAAGGAGGATGAGATCAGGAGGGATAGCTGGGACTATGTACCAAAACATTTGACTAAGACTGAGAGTAGATCCTAAGATTGAGATCAAGACAGAGTGACTGTGTCCTAATACAGAATGGTTCTATACTACAACATGAACTAAGAGGCACATTTTTACTGAAATCATCCAAACCCAAGGGAAAGAACTGCTGGACCATTCAAATTGTGATGGCTCAGAATGACAAGGAAAGAAAAAATGTCATTTCCCTAAAACATGCAAGAGGAAAAGGCTGACGAAGTGTAAGTTTAAAATGTGTTGTCAGCGGGACAACTATATTACACTTTATCTCAGGGTCTGGTGCAGTGAGACTATAAAACATTGGAGTGTTTACATTGACTGTATGTTAGAACGTGTAATGTACATTAGAACATGGACTATGTACATTAGAACATGTCATGTACATTAGAACATGGACTATGTACATTAGAACATGTAATGTACATTAGAACATGTAATGTACATTAGAACATGGACTATGTACATTAGAACATGGACTATGTACATTAGAACATGGACTATGTACAGTAGAACATGTCATGTACATTAGAACATGGACCATGTACATTAGAACCTGGACTATGTACATTAGAACATGTCGTGTACATTATAACATGTCATGTACATTAGCACATGCCATGTACATTAGGACATGGACTATGTACATTAGAACATGCCATGTACATTAGGACATGGACTATGTACATTAGAACATGGACTATGTACATTATAACATGGTCTATGTACATTAGAACATGGACTATGTACATTAGAACATGGACTATGTACATTAGAACATGTCATGTACATTAGAACATGTCATGTACATTAGAACATGGACTATGTACATTAGAACATGTCATGTACATTAGAACATGGACTATGTACATTAGAACATGTCATGTACATTAGAACATGTCATGTACATTAGAACATGGACCATGTACATTAGAACATGGACTATGTACATTAGAACATGTCATGTACATTAGAACATGGACAAGGTACATTAGAACATGGACTATGTacattagaacattagaacaaCAGAACTTGATAAATAAGCACAAACCGAAACAAGAAGGTACTATCTGTACCTGTCCATTAATTGAGGACTGCtcattttccattgcaaaacattttgacacggtgtgccctaatgaacatggccCAAGTCTCACAGACCTGACTACTTGGATTCGGTCGAGGTACGAAACATTTATGAATGCACTGCTGAAGCTTTTCTTTATGCATAGGAACTTCATCTGTATACACTCAggggccagtttattaggtacaacaccttgttcacgaaaatggttcactcctacagacagtgagtcacgtggcttgctatatacagtggggcaaaaaagtatttagtcagccaccaa

Function

symbol description
itga4 Predicted to act upstream of or within cell adhesion and integrin-mediated signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Is expressed in several structures, including cerebellum; intermediate cell mass of mesoderm; mid cerebral vein; notochord; and trunk. Human ortholog(s) of this gene implicated in autism spectrum disorder and pancreatic cancer. Orthologous to human ITGA4 (integrin subunit alpha 4).

NR:

description
integrin alpha-4-like

GO: NA

KEGG:

id description
K06483 ITGA4, CD49d; integrin alpha 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974824.1 True 4705 mRNA 0.45 28 61475876 61505428

Neighbor

gene id symbol gene type direction distance location
LOC110520315 ube2e3 coding upstream 105001 61331359 ~ 61370875 (+)
tgfbr2l LOC106586454 coding upstream 821563 60634539 ~ 60654313 (+)
LOC118964303 NA coding upstream 1092524 60382674 ~ 60383352 (+)
myl1 LOC100135947 coding upstream 1189796 60277245 ~ 60286080 (+)
LOC110505381 NA coding upstream 1205977 60267642 ~ 60269899 (+)
LOC110504376 LOC106586465 coding downstream 84630 61590058 ~ 61647253 (+)
LOC110520321 LOC106586467 coding downstream 143277 61648705 ~ 61663408 (+)
LOC110520324 LOC106586470 coding downstream 268005 61773433 ~ 61832413 (+)
LOC110520325 LOC106586471 coding downstream 331237 61836665 ~ 61841206 (+)
LOC110520332 LOC106586482 coding downstream 615771 62121199 ~ 62126483 (+)
G282399 NA non-coding upstream 47297 61428283 ~ 61428579 (+)
G282387 NA non-coding upstream 65782 61409882 ~ 61410094 (+)
G282374 NA non-coding upstream 77415 61398045 ~ 61398461 (+)
G282373 NA non-coding upstream 77876 61397785 ~ 61398000 (+)
G282357 NA non-coding upstream 94403 61381224 ~ 61381473 (+)
G282417 NA non-coding downstream 1489 61506917 ~ 61511531 (+)
G282458 NA non-coding downstream 22586 61528014 ~ 61528255 (+)
G282460 LOC106586556 non-coding downstream 29323 61534751 ~ 61535027 (+)
G282461 NA non-coding downstream 31133 61536561 ~ 61536772 (+)
G282462 NA non-coding downstream 32133 61537561 ~ 61537765 (+)
G281996 NA other upstream 438771 61033766 ~ 61037105 (+)
G281714 NA other upstream 582098 60891524 ~ 60893778 (+)
G281591 LOC106586456 other upstream 718526 60740239 ~ 60757350 (+)
G281141 NA other upstream 1185309 60287388 ~ 60303967 (+)
G280315 NA other upstream 1421459 60052716 ~ 60054417 (+)
G282707 il-1rii other downstream 451960 61957388 ~ 61964066 (+)
LOC110520339 lrrc63 other downstream 688176 62193287 ~ 62200069 (+)
LOC110520346 htr2a other downstream 862186 62367489 ~ 62408857 (+)
LOC110504398 LOC106586506 other downstream 1200903 62705451 ~ 62712740 (+)
G284313 NA other downstream 1510898 63016326 ~ 63022591 (+)

Expression


Co-expression Network