LOC110520320 (LOC106586468)


Basic Information

Item Value
gene id LOC110520320
gene name LOC106586468
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 61663705 ~ 61728601 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597553.2
AGGGACCAGGCAGGACCAgttgtctcagagcagcacagTGCAACGTAAGGAGAGGAGCAGCTGGGGGACAGCCCAGCCTCACACAGAGCTCCCTGCTCCTATCCCCAACCCAGCCCAGCCTGGGCTCACACTTTAAATGGAAGAGTATGTCACgatcaagaggaagcttctccaTAGACCCGTCTTCAGATTAAGATGCCTGGTGAAGCAACTAGACAAGGGAGAAGTGAACGTGGTGGACCTGAGGAAGAATATAGAGTATGCAGCCTCTGTTCTAGAGGCAGTCTATATTGATGAAACCAGGCGTCTTCTGGACACTGAGGATGAGCTCAGTGACATCCAGACGGACTCTGTTCCAATGGAGGTGCGGGATTGGCTGGCCTCGACCTTCACCAGGAAGATGGGCGTGGTCAGGAGACGACCCGAGGAGAAACCACGGTTCAAGAGCATCGTGCATGCCGTGCAGGCTGGCATCTTTGTCGAGAGGATGTACAGGCGGACATCTAACATGGCTGGATTGACGTACCCTCCAGCTGCCATCGCTGCTTTGAAGGATGTAGATAACTGGTCCTTTGATGTGTTTGTCCTCCACGAGGCCAGCAGTGAACACGCATTAAAGTTCCTGGTCTACGAACTGCTCACCCGATATGACCTGATCAACCGCTTCAGGATACCAGTGTCATCTTTGGTGTCCTTTGTAGAGGCTCTAGAGTTGGGCTACAGCAAACACAGAAACCCCTACCATAACCTGATCCACGCTGCCGACGTCACACAGACAGCACACTATCTGATGCTTCACACTGGCATCATGcacTGGCTCACTGAACTGGACATCCTGGCCATGGTGTTTGCTGCAGCTATCCATGACTTTGAACACACTGGGACAACCAACAACTTTCACATTCAGACCAGgtCAGAGGTGGCCATCCTGTACAACGACCGGTCAGTCCTGGAGAACCACCATGTTAGTGCTGCGTACAGACTTATGCAAGAGGATGAGATGAACATACTGGTCAACCTGTCAAAAGATGACTGGCGAGAGCTGCGGACCCTGGTGATTGAGATGGTGATGAGTACAGACATGTCCTGCCATTTCCAGCAGATCAAAAGCATGAGGAACGCCCTGCAGCAGCCTGAGGGAGTAGACAAGGCTAAAGCCCTATCTCTGATGCTGCATGCAGCTGACATCAGTCACCCAGCCAAGGCCTGGAAGCTGCACTACCGATGGACACAGGCCCTGATGGAGGAGTTCTTCCGACAGGGCGATAAAGAGGTTGAGTTAGGGCTGCCATTCTCTCCTCTGTGTGATCGTAAAGCTACCATGATCGCACAGTCACAAATAGGGTTCATTGACTTCATAGTGGAACCCACattctctgtgttggtggacACGACCGAGAAGATCATTACCCCTCTAATAGAGGATACCTTAAAGTCACATGATACTGGCGTACGCAGGTCAAGTTTGACGGGTAGTGGGTCGGTGACGGTGGTAGAGTCAGTCCAGAAACATAGTGGCCGAGGATCCAGCCAGGGGGTTGACCAGGGGCTCACTACAGACTATAGCCTGACTGGCATCGACCTGAAACGGATCAGACACACATTGGCAGAGGTCATCCAACACAACAAAGACCGATGGAAGGAGCTCTCTGTACAAGAGTTGGCGAGTAAAGAGCGAGCTGAGTTGAACACTGAcccagaggagatggaggagtccCAGATGAAAACAGAGGTTACATTGACTCACACCAGCCCTGAGAGACACAGCCAGGAGCTCCAATCAGAGCCCTTCAATGAACTGATGAACAACACAAACTCCAATAACTCTTCCCAGGAGGACTCAGAGCTGGACCACCATCCTCACAGTTCTCTGTCCCCGTGTGAGGATAAAGAGACAACATCACCTGGTTCCATCACTCCTGAACGCCTACCATGGAACGGAGCAGGCCCTGGGGCAGTCCTTGAGTCAGGGGAGGAGTCTCTTCAGAGCCCTTGATTCTGATAAGCGACCCAACAATGCTGCCACTTCCTGATTTTTATTCTACTTTACCTTCAtgtaacgaggcaagtcagttaagaacaaattattatttacaatgatggcctatcccggccaaaccctaacgacactgggccaattgtttgCCGCCCCTGATTCACCATATTtgtttgttagctttttttattgtaaatttgttctgattgattttatttccagtctgttattgtattgttatttaTTAAAGATGGGGATCTTCTTGCTCCTCTTTGCACCACAA
>XM_021597551.2
agataaacagagagagagcggtactagacagacagtgagagagaaacagagcgagaggtACTCTAGAGAGAGATTGAACCATCTGACAGTCAGACAATGAATGTCAGTGTGTAGTGGAGAGTGGTTCATTCACAGTGTGGCACTGTGTGAAGCAGCTGTCTCTTTTTCTGCTCTGATACTCTAATAGGCCAATAAGCGCAGTAATGCAGAAGCTGTAGAGCGGAGAGAAGAGACACAAGCCTCTTATGACTACAGTACAGGGATGATGCTTTGAGGACCAGACTGAGAAGTGCTCTGAGGATTCAGGGTTTCAGACTGCAGAGTGTAGACCGAGAGAGAGCTGCTGTGCTGTACATACCTGAGATACTGCAGTTAATCGCTGCACCTTTATAACACATTCAGCATGGATCTGGATGAACTGTGTACTTACACAGATGGCATGGACAACAGCTCCCTAAAGTACCCAAAGACTGAGCAGACGGAGAAAATGTGGATGCGACTAAAGGGAATGCAGAAGTACAAAAACACGTCTCAAAGATTAAGATGCCTGGTGAAGCAACTAGACAAGGGAGAAGTGAACGTGGTGGACCTGAGGAAGAATATAGAGTATGCAGCCTCTGTTCTAGAGGCAGTCTATATTGATGAAACCAGGCGTCTTCTGGACACTGAGGATGAGCTCAGTGACATCCAGACGGACTCTGTTCCAATGGAGGTGCGGGATTGGCTGGCCTCGACCTTCACCAGGAAGATGGGCGTGGTCAGGAGACGACCCGAGGAGAAACCACGGTTCAAGAGCATCGTGCATGCCGTGCAGGCTGGCATCTTTGTCGAGAGGATGTACAGGCGGACATCTAACATGGCTGGATTGACGTACCCTCCAGCTGCCATCGCTGCTTTGAAGGATGTAGATAACTGGTCCTTTGATGTGTTTGTCCTCCACGAGGCCAGCAGTGAACACGCATTAAAGTTCCTGGTCTACGAACTGCTCACCCGATATGACCTGATCAACCGCTTCAGGATACCAGTGTCATCTTTGGTGTCCTTTGTAGAGGCTCTAGAGTTGGGCTACAGCAAACACAGAAACCCCTACCATAACCTGATCCACGCTGCCGACGTCACACAGACAGCACACTATCTGATGCTTCACACTGGCATCATGcacTGGCTCACTGAACTGGACATCCTGGCCATGGTGTTTGCTGCAGCTATCCATGACTTTGAACACACTGGGACAACCAACAACTTTCACATTCAGACCAGgtCAGAGGTGGCCATCCTGTACAACGACCGGTCAGTCCTGGAGAACCACCATGTTAGTGCTGCGTACAGACTTATGCAAGAGGATGAGATGAACATACTGGTCAACCTGTCAAAAGATGACTGGCGAGAGCTGCGGACCCTGGTGATTGAGATGGTGATGAGTACAGACATGTCCTGCCATTTCCAGCAGATCAAAAGCATGAGGAACGCCCTGCAGCAGCCTGAGGGAGTAGACAAGGCTAAAGCCCTATCTCTGATGCTGCATGCAGCTGACATCAGTCACCCAGCCAAGGCCTGGAAGCTGCACTACCGATGGACACAGGCCCTGATGGAGGAGTTCTTCCGACAGGGCGATAAAGAGGTTGAGTTAGGGCTGCCATTCTCTCCTCTGTGTGATCGTAAAGCTACCATGATCGCACAGTCACAAATAGGGTTCATTGACTTCATAGTGGAACCCACattctctgtgttggtggacACGACCGAGAAGATCATTACCCCTCTAATAGAGGATACCTTAAAGTCACATGATACTGGCGTACGCAGGTCAAGTTTGACGGGTAGTGGGTCGGTGACGGTGGTAGAGTCAGTCCAGAAACATAGTGGCCGAGGATCCAGCCAGGGGGTTGACCAGGGGCTCACTACAGACTATAGCCTGACTGGCATCGACCTGAAACGGATCAGACACACATTGGCAGAGGTCATCCAACACAACAAAGACCGATGGAAGGAGCTCTCTGTACAAGAGTTGGCGAGTAAAGAGCGAGCTGAGTTGAACACTGAcccagaggagatggaggagtccCAGATGAAAACAGAGGTTACATTGACTCACACCAGCCCTGAGAGACACAGCCAGGAGCTCCAATCAGAGCCCTTCAATGAACTGATGAACAACACAAACTCCAATAACTCTTCCCAGGAGGACTCAGAGCTGGACCACCATCCTCACAGTTCTCTGTCCCCGTGTGAGGATAAAGAGACAACATCACCTGGTTCCATCACTCCTGAACGCCTACCATGGAACGGAGCAGGCCCTGGGGCAGTCCTTGAGTCAGGGGAGGAGTCTCTTCAGAGCCCTTGATTCTGATAAGCGACCCAACAATGCTGCCACTTCCTGATTTTTATTCTACTTTACCTTCAtgtaacgaggcaagtcagttaagaacaaattattatttacaatgatggcctatcccggccaaaccctaacgacactgggccaattgtttgCCGCCCCTGATTCACCATATTtgtttgttagctttttttattgtaaatttgttctgattgattttatttccagtctgttattgtattgttatttaTTAAAGATGGGGATCTTCTTGCTCCTCTTTGCACCACAA
>XM_021597552.2
acagagataaacagagagagagcggtactagacagacagtgagagagaaacagagcgagaggtACTCTAGAGAGAGATTGAACCATCTGACAGTCAGACAATGAATGTCAGTGTGTAGTGGAGAGTGGTTCATTCACAGTGTGGCACTGTGTGAAGCAGCTGTCTCTTTTTCTGCTCTGATACTCTAATAGGCCAATAAGCGCAGTAATGCAGAAGCTGTAGAGCGGAGAGAAGAGACACAAGCCTCTTATGACTACAGTACAGGGATGATGCTTTGAGGACCAGACTGAGAAGTGCTCTGAGGATTCAGGGTTTCAGACTGCAGAGTGTAGACCGAGAGAGAGCTGCTGTGCTGTACATACCTGAGATACTGCAGTTAATCGCTGCACCTTTATAACACATTCAGCATGGATCTGGATGAACTGTGTACTTACACAGATGGCATGGACAACAGCTCCCTAAAGTACCCAAAGACTGAGCAGACGGAGAAAATGTGGATGCGACTAAAGGGAATGCAGAAGTACAAAAACACGTCTCAAAGATTAAGATGCCTGGTGAAGCAACTAGACAAGGGAGAAGTGAACGTGGTGGACCTGAGGAAGAATATAGAGTATGCAGCCTCTGTTCTAGAGGCAGTCTATATTGATGAAACCAGGCGTCTTCTGGACACTGAGGATGAGCTCAGTGACATCCAGACGGACTCTGTTCCAATGGAGGTGCGGGATTGGCTGGCCTCGACCTTCACCAGGAAGATGGGCGTGGTCAGGAGACGACCCGAGGAGAAACCACGGTTCAAGAGCATCGTGCATGCCGTGCAGGCTGGCATCTTTGTCGAGAGGATGTACAGGCGGACATCTAACATGGCTGGATTGACGTACCCTCCAGCTGCCATCGCTGCTTTGAAGGATGTAGATAACTGGTCCTTTGATGTGTTTGTCCTCCACGAGGCCAGCAGTGAACACGCATTAAAGTTCCTGGTCTACGAACTGCTCACCCGATATGACCTGATCAACCGCTTCAGGATACCAGTGTCATCTTTGGTGTCCTTTGTAGAGGCTCTAGAGTTGGGCTACAGCAAACACAGAAACCCCTACCATAACCTGATCCACGCTGCCGACGTCACACAGACAGCACACTATCTGATGCTTCACACTGGCATCATGcacTGGCTCACTGAACTGGACATCCTGGCCATGGTGTTTGCTGCAGCTATCCATGACTTTGAACACACTGGGACAACCAACAACTTTCACATTCAGACCAGgtCAGAGGTGGCCATCCTGTACAACGACCGGTCAGTCCTGGAGAACCACCATGTTAGTGCTGCGTACAGACTTATGCAAGAGGATGAGATGAACATACTGGTCAACCTGTCAAAAGATGACTGGCGAGAGCTGCGGACCCTGGTGATTGAGATGGTGATGAGTACAGACATGTCCTGCCATTTCCAGCAGATCAAAAGCATGAGGAACGCCCTGCAGCAGCCTGAGGGAGTAGACAAGGCTAAAGCCCTATCTCTGATGCTGCATGCAGCTGACATCAGTCACCCAGCCAAGGCCTGGAAGCTGCACTACCGATGGACACAGGCCCTGATGGAGGAGTTCTTCCGACAGGGCGATAAAGAGGTTGAGTTAGGGCTGCCATTCTCTCCTCTGTGTGATCGTAAAGCTACCATGATCGCACAGTCACAAATAGGGTTCATTGACTTCATAGTGGAACCCACattctctgtgttggtggacACGACCGAGAAGATCATTACCCCTCTAATAGAGGATACCTTAAAGTCACATGATACTGGCGTACGCAGGTCAAGTTTGACGGGTAGTGGGTCGGTGACGGTGGTAGAGTCAGTCCAGAAACATAGTGGCCGAGGATCCAGCCAGGGGGTTGACCAGGGGCTCACTACAGACTATAGCCTGACTGGCATCGACCTGAAACGGATCAGACACACATTGGCAGAGGTCATCCAACACAACAAAGACCGATGGAAGGAGCTCTCTGTACAAGAGTTGGCGAGTAAAGAGCGAGCTGAGTTGAACACTGAcccagaggagatggaggagtccCAGATGAAAACAGAGGTTACATTGACTCACACCAGCCCTGAGAGACACAGCCAGGAGCTCCAATCAGAGCCCTTCAATGAACTGATGAACAACACAAACTCCAATAACTCTTCCCAGGAGGACTCAGAGCTGGACCACCATCCTCACAGTTCTCTGTCCCCGTGTGAGGATAAAGAGACAACATCACCTGGTTCCATCACTCCTGAACGCCTACCATGGAACGGCCCTGGGGCAGTCCTTGAGTCAGGGGAGGAGTCTCTTCAGAGCCCTTGATTCTGATAAGCGACCCAACAATGCTGCCACTTCCTGATTTTTATTCTACTTTACCTTCAtgtaacgaggcaagtcagttaagaacaaattattatttacaatgatggcctatcccggccaaaccctaacgacactgggccaattgtttgCCGCCCCTGATTCACCATATTtgtttgttagctttttttattgtaaatttgttctgattgattttatttccagtctgttattgtattgttatttaTTAAAGATGGGGATCTTCTTGCTCCTCTTTGCACCACAA

Function

NR:

description
calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A-like isoform X2

GO: NA

KEGG:

id description
K13755 PDE1; calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597553.2 False 2279 mRNA 0.51 15 61663705 61705190
XM_021597551.2 False 2627 mRNA 0.49 16 61663705 61728597
XM_021597552.2 True 2625 mRNA 0.49 16 61663705 61728601

Neighbor

gene id symbol gene type direction distance location
LOC110520317 ndf1 coding downstream 80645 61578579 ~ 61583060 (-)
LOC110520318 NA coding downstream 115453 61506974 ~ 61548252 (-)
LOC118964366 NA coding downstream 393133 61270516 ~ 61270572 (-)
LOC110520314 LOC106586461 coding downstream 409067 61202903 ~ 61254638 (-)
LOC110520312 LOC106586462 coding downstream 471832 61034879 ~ 61191873 (-)
LOC110520322 LOC106586411 coding upstream 39902 61768503 ~ 61772972 (-)
il-1r1 il-1r1 coding upstream 161508 61890109 ~ 61916561 (-)
zmp:0000000936 LOC106586476 coding upstream 191293 61919894 ~ 61956548 (-)
il-1rii il-1rii coding upstream 228770 61957371 ~ 61964014 (-)
LOC110520327 LOC106586477 coding upstream 238027 61966628 ~ 62081171 (-)
G283251 NA non-coding downstream 16426 61643098 ~ 61647279 (-)
G283224 NA non-coding downstream 60508 61602757 ~ 61603197 (-)
G283198 NA non-coding downstream 95230 61567975 ~ 61568475 (-)
G283197 NA non-coding downstream 101314 61562163 ~ 61562391 (-)
G283195 NA non-coding downstream 108977 61552148 ~ 61554728 (-)
G283373 NA non-coding upstream 116814 61845415 ~ 61849699 (-)
G283398 NA non-coding upstream 169132 61897733 ~ 61905194 (-)
G283541 LOC106586480 non-coding upstream 419716 62148317 ~ 62151490 (-)
G283587 NA non-coding upstream 519646 62248247 ~ 62254684 (-)
G283589 NA non-coding upstream 540623 62269224 ~ 62271259 (-)
G277749 LOC106586429 other downstream 4074522 57584386 ~ 57589183 (-)
G277673 LOC106586423 other downstream 4260130 57402984 ~ 57403575 (-)
si:dkey-91i10.3 LOC106586420 other downstream 4365943 57270782 ~ 57297762 (-)
G275250 NA other downstream 6252218 55410143 ~ 55411487 (-)
LOC110520227 plekhm3 other downstream 6544493 55068639 ~ 55122013 (-)
G284018 NA other upstream 985974 62714575 ~ 62715177 (-)
G286522 NA other upstream 3240948 64969549 ~ 64970755 (-)
G286580 marco other upstream 3285658 65014259 ~ 65029736 (-)
G286638 NA other upstream 3326099 65054700 ~ 65075985 (-)
G286953 LOC107579696 other upstream 3506579 65235180 ~ 65235908 (-)

Expression


Co-expression Network