il-1r1 (il-1r1)


Basic Information

Item Value
gene id il-1r1
gene name il-1r1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 61890109 ~ 61916561 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124360.1
TGTAGACCAAATGAGGAGACGGTGTTTATTCCACTGACGCAAAATAAAGCACAAAGCATCAAGCTAAGATTCggaacatcatgttgtgggagttcTACATTTGCTTTCTCAATGTGACTCTGTTGCTCCACCTCTCCCATGGCCAAGAACACCAGGGGGCCGTAGAGGTCCACCACATCAGTGCAGGTCACTTCTTCCAGCTGAAGTGTAGTGATGACGATGATGCTGAGGACCGAACCACTGTGACCTGGAGTAGAGGGGGGAACCAGACCCTTAACACAACCTCTGGGGTGGAGGTCAGAGGGGAGGTTCTGTGGTTTCTACCTACCCACACCTCCCATAACGGACACTACACTTGTGAGAGCAAGTACCCCACTGGATCGTGGGAGATGAAGTTTGTTTTGTCTGTGGACCCTGGGCCCTGTCCTGTCCCAGCTGAGAACAGGACTGTATCCCAGGGGATGAGTGAAGTGGTGTTCTGCAGACAGCAGGATGTCCTCAGTCTAGACCCCACAGCACACATCCGATGGTTCAAGGACTGTAGTCCTGTCGACAAGCATGGAGAGACGATCATTGAAGAAGATTGTCCGAAGAGGCTCCGGTTGGTCAATGCTACTGAGAGCCATGCTGGAGTTTATACCTGCCTGGTAGAGTTCTCTCTGCAGGGGAGAAACTACACCGCCACCCACAGCACTCAGCTCAAAGTCAACAAAGAAAAAGTCCCGTTGAAACCCCAAGTAACCTATCCCAGAAAAGAAACCTTTACGGTTGAACCAGGCTCAAGAGTAGAGCTGGTGTGTTCAGCGTTTCTAGGGGTCGGTGAAGGTACAGAGTCAGAGAGCTCTATGTTCTGGACGGTAGATGGAAGACATACCGACCACATAGAACAGCTCAACGTGACAAAGACAACAATCCTTTCTAGGAGTAGTGGGGTCTATGGCCGGTCCACTCTGTCTATCTATGAGGTCCGTCCTGAGTTCCTCAACGTGACCATCAGCTGCATCGCCAGGAACGCCGTGGGTCGGGACATAGGGTTTCTGTGGCTCCAACCAGCCAATCACAGTGGTTTCTACACATGCCTGTGTCTCTGCCTGGCCTTTTCTATGGTCGTTCTTGGAGTAGCGATGTGCTGCCTCTTTAAAGTGGACCTGGTGCTGGCCTATAGGAGACTCCTCCCCCTAGTGTCCAAAAAGAGGGCACCAGATGGAAAGCTGTATGATGCCTATGTCAGTTATGTCCATGGTGATGGGTTGTCCAAGGCAGAGATGTTTGCTCTGCAGGTTCTACCTGAGGTGTTGGAGAGACGATACGGATACACACTTTTTGTCAGTGGCCGGGATGACCTCCCTGgggaagCGATCCATGATGTCACCTCAGAGACAATGCGGAGAAGCAGACGACTCATCATCATCCTGTCAGCCCAGAGTGCATCCCCTCTACACCCCAAAATGGATCCTGAGGACCAGTTACCACTGCACCAGAGCCTGCAGGACCGCCCTAGCTACGACCAGCAGATTGGCCTGTACGACGCTTTGATCCAAAATGGCCTCCAGGTTGTCCTGGTGGAGATAGATGGCAAGGTGGACTACACTTCCCTGCCCAAGTCACTTCACTATATCAGGAGGAAGCAGGGAGCTCTGAGATGGAGGAGGCCCAGCTCTGGAAAGAGCAGCTCCACTGCGTCCCCTAATGGCCACTTCTGGAAGTGTCTTAGATACCACATGCCCTTCAAGCCCAAAGGGGCTCTGAAACCGCAGCCAACACCTGGGATAAACTGTAGTATAGAACTGTATTAGTCATGTCTCTATTAGACGTTATCTGACAATGTTTATATTGATGTATTCACATGGCTATTATGCCTATGGCTGGTGAGGCCAAGCCTGATCCTGGAACCCTTGAATTGTTGAATtatagattttttaaaatatgtttgagACACCAATGTGATCGAGTGTCCTAAGAATTGTACAAGAGCACTTGTGCAGATTGAGAGGCTTTTTCTTGTAGCAATCCGGCCTACAAGAAACAGTTACACTCCTCCTGAATAGAGTTTTGCTAATTTTGCTCATACTTTGCTCATACTAGTTCCAGTGTAATCGAGTGTCCTCTAAGAATTGTGCAAGAGCACTTGAGAAGCTTTTTCTAGCAGTAACAGAGTTATTTGTGTAATGCGTCAGGGCAGTGGTACTGGTACAGCTGGCCTGGCGCTATGTTGTCTCAGTATAAACAGGATATCATCTGGCTGGTTTGGAAACAGCATGGTCTCAACCAAGGTTTCCACTGACTTAGTAATCTCTAAATGGTACAGTCTctacatttgttttgtcttgtttttattGTATAACTACTGTACTTTATTAGCTCACTTTACACTGTACATTTGATAAATTATGAAATGTGATGAACTGGACTATTTTCTTCCAATAGTTCCATCAATAGTTGCTGAATATAAGGATAGATATGTTCGAGACCTTTAAGTTAATGAAGTTGAATTCATGTTTGCCTCTGTGTGCATGTTTGAGAAAGAGTGTATGCTCTTGTGAATGCTGCATGTCAATTAAAAGTGTGTTTGATGGGTTA
>XM_021581389.2
CATCTAGCTGAGTGGGCGGCTTGTAGTGGAACCAGGCATACGATGCGCTCCCTGAGACGTAAAGTAGGCTAACGTTACTCATATAGGTTCAAAGTTCCGGGAAGGGGATTTCCGCCAAACCATTACTCTTGTAGACCAAATGAGGAGACGGTGTTTATTCCACTGACGCAAAATAAAGCACAAAGCATCAAGCTAAGAACACCAGGGGGCCGTAGAGGTCCACCACATCAGTGCAGGTCACTTCTTCCAGCTGAAGTGTAGTGATGACGATGATGCTGAGGACCGAACCACTGTGACCTGGAGTAGAGGGGGGAACCAGACCCTTAACACAACCTCTGGGGTGGAGGTCAGAGGGGAGGTTCTGTGGTTTCTACCTACCCACACCTCCCATAACGGACACTACACTTGTGAGAGCAAGTACCCCACTGGATCGTGGGAGATGAAGTTTGTTTTGTCTGTGGACCCTGGGCCCTGTCCTGTCCCAGCTGAGAACAGGACTGTATCCCAGGGGATGAGTGAAGTGGTGTTCTGCAGACAGCAGGATGTCCTCAGTCTAGACCCCACAGCACACATCCGATGGTTCAAGGACTGTAGTCCTGTCGACAAGCATGGAGAGACGATCATTGAAGAAGATTGTCCGAAGAGGCTCCGGTTGGTCAATGCTACTGAGAGCCATGCTGGAGTTTATACCTGCCTGGTAGAGTTCTCTCTGCAGGGGAGAAACTACACCGCCACCCACAGCACTCAGCTCAAAGTCAACAAAGAAAAAGTCCCGTTGAAACCCCAAGTAACCTATCCCAGAAAAGAAACCTTTACGGTTGAACCAGGCTCAAGAGTAGAGCTGGTGTGTTCAGCGTTTCTAGGGGTCGGTGAAGGTACAGAGTCAGAGAGCTCTATGTTCTGGACGGTAGATGGAAGACATACCGACCACATAGAACAGCTCAACGTGACAAAGACAACAATCCTTTCTAGGAGTAGTGGGGTCTATGGCCGGTCCACTCTGTCTATCTATGAGGTCCGTCCTGAGTTCCTCAACGTGACCATCAGCTGCATCGCCAGGAACGCCGTGGGTCGGGACATAGGGTTTCTGTGGCTCCAACCAGCCAATCACAGTGGTTTCTACACATGCCTGTGTCTCTGCCTGGCCTTTTCTATGGTCGTTCTTGGAGTAGCGATGTGCTGCCTCTTTAAAGTGGACCTGGTGCTGGCCTATAGGAGACTCCTCCCCCTAGTGTCCAAAAAGAGGGCACCAGATGGAAAGCTGTATGATGCCTATGTCAGTTATGTCCATGGTGATGGGTTGTCCAAGGCAGAGATGTTTGCTCTGCAGGTTCTACCTGAGGTGTTGGAGAGACGATACGGATACACACTTTTTGTCAGTGGCCGGGATGACCTCCCTGgggaagCGATCCATGATGTCACCTCAGAGACAATGCGGAGAAGCAGACGACTCATCATCATCCTGTCAGCCCAGAGTGCATCCCCTCTACACCCCAAAATGGATCCTGAGGACCAGTTACCACTGCACCAGAGCCTGCAGGACCGCCCTAGCTACGACCAGCAGATTGGCCTGTACGACGCTTTGATCCAAAATGGCCTCCAGGTTGTCCTGGTGGAGATAGATGGCAAGGTGGACTACACTTCCCTGCCCAAGTCACTTCACTATATCAGGAGGAAGCAGGGAGCTCTGAGATGGAGGAGGCCCAGCTCTGGAAAGAGCAGCTCCACTGCGTCCCCTAATGGCCACTTCTGGAAGTGTCTTAGATACCACATGCCCTTCAAGCCCAAAGGGGCTCTGAAACCGCAGCCAACACCTGGGATAAACTGTAGTATAGAACTGTATTAGTCATGTCTCTATTAGACGTTATCTGACAATGTTTATATTGATGTATTCACATGGCTATTATGCCTATGGCTGGTGAGGCCAAGCCTGATCCTGGAACCCTTGAATTGTTGAATtatagattttttaaaatatgtttgagACACCAATGTGATCGAGTGTCCTAAGAATTGTACAAGAGCACTTGTGCAGATTGAGAGGCTTTTTCTTGTAGCAATCCGGCCTACAAGAAACAGTTACACTCCTCCTGAATAGAGTTTTGCTAATTTTGCTCATACTTTGCTCATACTAGTTCCAGTGTAATCGAGTGTCCTCTAAGAATTGTGCAAGAGCACTTGAGAAGCTTTTTCTAGCAGTAACAGAGTTATTTGTGTAATGCGTCAGGGCAGTGGTACTGGTACAGCTGGCCTGGCGCTATGTTGTCTCAGTATAAACAGGATATCATCTGGCTGGTTTGGAAACAGCATGGTCTCAACCAAGGTTTCCACTGACTTAGTAATCTCTAAATGGTACAGTCTctacatttgttttgtcttgtttttattGTATAACTACTGTACTTTATTAGCTCACTTTACACTGTACATTTGATAAATTATGAAATGTGATGAACTGGACTATTTTCTTCCAATAGTTCCATCAATAGTTGCTGAATATAAGGATAGATATGTTCGAGACCTTTAAGTTAATGAAGTTGAATTCATGTTTGCCTCTGTGTGCATGTTTGAGAAAGAGTGTATGCTCTTGTGAATGCTGCATGTCAATTAAAAGTGTGTTTGATGG

Function

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0004908 interleukin-1 receptor activity molecular_function

KEGG:

id description
K04386 IL1R1, CD121a; interleukin 1 receptor type I

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124360.1 False 2580 mRNA 0.48 11 61890109 61916432
XM_021581389.2 True 2626 mRNA 0.48 10 61890113 61916561

Neighbor

gene id symbol gene type direction distance location
LOC110520322 LOC106586411 coding downstream 117137 61768503 ~ 61772972 (-)
LOC110520320 LOC106586468 coding downstream 161508 61663705 ~ 61728601 (-)
LOC110520317 ndf1 coding downstream 307049 61578579 ~ 61583060 (-)
LOC110520318 NA coding downstream 341857 61506974 ~ 61548252 (-)
LOC118964366 NA coding downstream 619537 61270516 ~ 61270572 (-)
zmp:0000000936 LOC106586476 coding upstream 3333 61919894 ~ 61956548 (-)
il-1rii il-1rii coding upstream 40810 61957371 ~ 61964014 (-)
LOC110520327 LOC106586477 coding upstream 50067 61966628 ~ 62081171 (-)
LOC110520328 LOC106586479 coding upstream 173702 62090263 ~ 62102123 (-)
LOC110520331 LOC106586481 coding upstream 210077 62126638 ~ 62129589 (-)
G283373 NA non-coding downstream 40410 61845415 ~ 61849699 (-)
G283282 NA non-coding downstream 191790 61693218 ~ 61698319 (-)
G283256 NA non-coding downstream 200534 61653325 ~ 61689575 (-)
G283251 NA non-coding downstream 242830 61643098 ~ 61647279 (-)
G283224 NA non-coding downstream 286912 61602757 ~ 61603197 (-)
G283541 LOC106586480 non-coding upstream 231756 62148317 ~ 62151490 (-)
G283587 NA non-coding upstream 331686 62248247 ~ 62254684 (-)
G283589 NA non-coding upstream 352663 62269224 ~ 62271259 (-)
G283697 NA non-coding upstream 496155 62412716 ~ 62413039 (-)
G283899 NA non-coding upstream 561973 62478534 ~ 62480130 (-)
G277749 LOC106586429 other downstream 4300926 57584386 ~ 57589183 (-)
G277673 LOC106586423 other downstream 4486534 57402984 ~ 57403575 (-)
si:dkey-91i10.3 LOC106586420 other downstream 4592347 57270782 ~ 57297762 (-)
G275250 NA other downstream 6478622 55410143 ~ 55411487 (-)
LOC110520227 plekhm3 other downstream 6770897 55068639 ~ 55122013 (-)
G284018 NA other upstream 798014 62714575 ~ 62715177 (-)
G286522 NA other upstream 3052988 64969549 ~ 64970755 (-)
G286580 marco other upstream 3097698 65014259 ~ 65029736 (-)
G286638 NA other upstream 3138139 65054700 ~ 65075985 (-)
G286953 LOC107579696 other upstream 3318619 65235180 ~ 65235908 (-)

Expression


Co-expression Network