zmp:0000000936 (LOC106586476)


Basic Information

Item Value
gene id zmp:0000000936
gene name LOC106586476
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 61919894 ~ 61956548 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974835.1
TCCTGCTGAGGTCGAGTCAGGCTTCCTCTCTAGGCTGGACTCCTAAAGAGAACACACTCTTTTGCAACCGGTCCTGTGTGGATCCCTGCAGTGTGGATAGCTATGGATTGGAGTCAGATGTTGCAGATCTTCCTCTTCTCACTCATCTGTCTCACTGGCAGCTCCAAGGCTGTAGGAGAGCTCTGTAAGGACTATGGACGAGAGTTTGAGCGGGTATTTTCAGTCCCGGGTGATGCCGCCATGTTGACATCCACCCTGTTGGCCCCCAACGTGTTCAACCATCACACCGTCCCCTATAACATCTCATGGTACGACCCAAGGACTGGGAGAAAGCTGACCAGCGAGACGGGGAAAACATTGGTGCAGGGGAAGACACTGTGGATGTTTAACATTGAGATGGACGATGCTGGAGACTATGTCTGTGTTGTGAGAACTCCCTCCCAGTGCTACAAGCAGGCTACCTTACTGATTGTGAACCAGATCAACCCAGAAGAATGCGGTCGACCACAGAATGAGGTTGAACAGGTCCTGACCAATACAGCCAGCGCTTTCCTGTCCTGCCCATTGAGTGACCAGATCAGGAAAGTGGACAATTACTCCATCCAGTGGTACAAGGGATGCGAACGCATTGTGGAAGATGACCCATTGTGGGACAGGTTTACCTATGTCAGTGATGGCCAGAAACTCTTAGTAGCTCAGGTCCACCCTGAAGACCATGGATTCTACACTTGCACCATGACCTTTGACCTGGAAGGGCTCAGCGGCAGAATTTCAGAGACTTTTGTGGGTACGGTGAAAAAGGAGTATTGCCTTGTCCCCAAAGTGGTTGAACCTGCTAATAAGATCATCAAAGCAGATTTGGGCTCTTCCTTCAGTAAGATGTGTCGGGTGTTTGTGCTGAGTGTGGGGGGACAATGCGTGGACTTGAATTGGATAGCTAGAGATGACAATATTCCCGAAAATGTCTCAGAGCGAGTCTTTCAGGAATCACAAAGCgagtggagagaagaagagaagactgCTGTGTGGATTGAGCGTCAGTTGAATTTCTTGGAGGTGGAAGAGGAAGACTTTTACATTGACTACACGTGTCAGACCTGGAGCGACAGAGGCTATTATTCAGCCTCCTTCACACTCCACCCTACAGATCCAAACTACCTGCTCCCTATTGGGGTACTACTGACGAGTCTGGTATTGATGTTTACTGTTAGTGTTGTTATTTACCATCGCTTCAAGATTGACATAGTGCTGTCGTTCAGGAGGATGTTCCCATTTCTCTACACAAACACAGAGTCTGATGGAAAGCTGTATGATGCATATGTGGCGTATCCCCATCTCTCTGGGAGCGTGGCCAGTGGGGAGGTGGAAATGTTTGCCCTCCACACATTGCCCCAGGTTCTCGAGGGGAGGTGTGGCTACAGGCTCTTTATTCTGGGCCGGGACAGCCTACCAGGGGACGCCGTAGTAGATGCTGTGGAGGAGAGTATGTGGGCCAGCCGGCGTCTCCTCCTTGTCTACACTGGCTCTACGTTCTGCAGTGGAGGTCAGagtgacagcagcagcagcgatgtCCTGGAGACCTGGAAGAGCTTTGAGAGGCAGATGGCTATGCACCGTGCACTGCTGGAGGGTTCCCTTAAGGTGGTTCTGGTGGAGCTGGAAGAGATCACCCCCACACAGCTCGCCTTCTTCCCCGAGTCGGTGCGCCACCTCCGGGAGCGCCAGGGTGCTGTCTGCTGGTGGAAGAGTAGCAGGACTAGGAGGACCAGAGGGTTGAGGTGTGGGAGGTGGGGGgaagaggaggtgaaggagaagagagggtcttcaccctctttctcctcaccctctcattCCTCATCCTCACACTTCTGGAAGGAACTGAGGTATTATATGCCTGTGAGGGGCAAGAGGACAAAGTGTCCAGAGAAGAACAGTCTGTTGAACATCTGAAGGGATAGATGGGCGGTTGGGAGAGGACAGTGTTGACATGTTATGGATGGATGTTCAAATGACCAACGTGAGGAGGAAATCTGTTGAATGAAAGATCTTCTGATACCATGGAGAGTATAAAATAACACTTGGTAGTGACCATATTGGCAGAGCcagtcacacacgcacgcacacacattatGGAacactgctaccatgttgtacaTACACACCAAATCTGTGTGAGAGCTTTAATAAAGATTTCACAGTATATTCTA
>XM_036974837.1
TCCATAAAGTCCTGCCCCAGATTGCCTGTGGCGTGTTTGTGTAGGAGATTCAGCTGACAAGTGAGGTATTCAGTGGAAGGTCGGGAAGCGGAATGATACTTTTTTGTGTGTGATCATTTCACTTGCTATGGATTGGAGTCAGATGTTGCAGATCTTCCTCTTCTCACTCATCTGTCTCACTGGCAGCTCCAAGGCTGTAGGAGAGCTCTGTAAGGACTATGGACGAGAGTTTGAGCGGGTATTTTCAGTCCCGGGTGATGCCGCCATGTTGACATCCACCCTGTTGGCCCCCAACGTGTTCAACCATCACACCGTCCCCTATAACATCTCATGGTACGACCCAAGGACTGGGAGAAAGCTGACCAGCGAGACGGGGAAAACATTGGTGCAGGGGAAGACACTGTGGATGTTTAACATTGAGATGGACGATGCTGGAGACTATGTCTGTGTTGTGAGAACTCCCTCCCAGTGCTACAAGCAGGCTACCTTACTGATTGTGAACCAGATCAACCCAGAAGAATGCGGTCGACCACAGAATGAGGTTGAACAGGTCCTGACCAATACAGCCAGCGCTTTCCTGTCCTGCCCATTGAGTGACCAGATCAGGAAAGTGGACAATTACTCCATCCAGTGGTACAAGGGATGCGAACGCATTGTGGAAGATGACCCATTGTGGGACAGGTTTACCTATGTCAGTGATGGCCAGAAACTCTTAGTAGCTCAGGTCCACCCTGAAGACCATGGATTCTACACTTGCACCATGACCTTTGACCTGGAAGGGCTCAGCGGCAGAATTTCAGAGACTTTTGTGGGTACGGTGAAAAAGGAGTATTGCCTTGTCCCCAAAGTGGTTGAACCTGCTAATAAGATCATCAAAGCAGATTTGGGCTCTTCCTTCAGTAAGATGTGTCGGGTGTTTGTGCTGAGTGTGGGGGGACAATGCGTGGACTTGAATTGGATAGCTAGAGATGACAATATTCCCGAAAATGTCTCAGAGCGAGTCTTTCAGGAATCACAAAGCgagtggagagaagaagagaagactgCTGTGTGGATTGAGCGTCAGTTGAATTTCTTGGAGGTGGAAGAGGAAGACTTTTACATTGACTACACGTGTCAGACCTGGAGCGACAGAGGCTATTATTCAGCCTCCTTCACACTCCACCCTACAGATCCAAACTACCTGCTCCCTATTGGGGTACTACTGACGAGTCTGGTATTGATGTTTACTGTTAGTGTTGTTATTTACCATCGCTTCAAGATTGACATAGTGCTGTCGTTCAGGAGGATGTTCCCATTTCTCTACACAAACACAGAGTCTGATGGAAAGCTGTATGATGCATATGTGGCGTATCCCCATCTCTCTGGGAGCGTGGCCAGTGGGGAGGTGGAAATGTTTGCCCTCCACACATTGCCCCAGGTTCTCGAGGGGAGGTGTGGCTACAGGCTCTTTATTCTGGGCCGGGACAGCCTACCAGGGGACGCCGTAGTAGATGCTGTGGAGGAGAGTATGTGGGCCAGCCGGCGTCTCCTCCTTGTCTACACTGGCTCTACGTTCTGCAGTGGAGGTCAGagtgacagcagcagcagcgatgtCCTGGAGACCTGGAAGAGCTTTGAGAGGCAGATGGCTATGCACCGTGCACTGCTGGAGGGTTCCCTTAAGGTGGTTCTGGTGGAGCTGGAAGAGATCACCCCCACACAGCTCGCCTTCTTCCCCGAGTCGGTGCGCCACCTCCGGGAGCGCCAGGGTGCTGTCTGCTGGTGGAAGAGTAGCAGGACTAGGAGGACCAGAGGGTTGAGGTGTGGGAGGTGGGGGgaagaggaggtgaaggagaagagagggtcttcaccctctttctcctcaccctctcattCCTCATCCTCACACTTCTGGAAGGAACTGAGGTATTATATGCCTGTGAGGGGCAAGAGGACAAAGTGTCCAGAGAAGAACAGTCTGTTGAACATCTGA
>XM_036974836.1
GTGTTGCACAACGCTGCATTCTTTGCTTTTGAGCAGAAAGGTTTCTTAAGATCCAGAGGAAATTGTTACACATTCAGCCCAGAAACACTCCCAGACTACAGAAGAACTTCTGTTTGGGAAAACAGTGTTTTTGAGCATGTCTGATGCTTTTTAAATGTATATTCTTCAATATAGCCTTTAGGTTAAAATTGAAGATGGTGTTTTTACAGTCGTTTACTAGACAAAGTACATGGAGAAGCCTGTTTAATAGAAAAGGAATGTGACATGGACTTCAAGCTGTTCGGATAAGGCGTGGAACCAGAACTAAACTTCAGCTATGGATTGGAGTCAGATGTTGCAGATCTTCCTCTTCTCACTCATCTGTCTCACTGGCAGCTCCAAGGCTGTAGGAGAGCTCTGTAAGGACTATGGACGAGAGTTTGAGCGGGTATTTTCAGTCCCGGGTGATGCCGCCATGTTGACATCCACCCTGTTGGCCCCCAACGTGTTCAACCATCACACCGTCCCCTATAACATCTCATGGTACGACCCAAGGACTGGGAGAAAGCTGACCAGCGAGACGGGGAAAACATTGGTGCAGGGGAAGACACTGTGGATGTTTAACATTGAGATGGACGATGCTGGAGACTATGTCTGTGTTGTGAGAACTCCCTCCCAGTGCTACAAGCAGGCTACCTTACTGATTGTGAACCAGATCAACCCAGAAGAATGCGGTCGACCACAGAATGAGGTTGAACAGGTCCTGACCAATACAGCCAGCGCTTTCCTGTCCTGCCCATTGAGTGACCAGATCAGGAAAGTGGACAATTACTCCATCCAGTGGTACAAGGGATGCGAACGCATTGTGGAAGATGACCCATTGTGGGACAGGTTTACCTATGTCAGTGATGGCCAGAAACTCTTAGTAGCTCAGGTCCACCCTGAAGACCATGGATTCTACACTTGCACCATGACCTTTGACCTGGAAGGGCTCAGCGGCAGAATTTCAGAGACTTTTGTGGGTACGGTGAAAAAGGAGTATTGCCTTGTCCCCAAAGTGGTTGAACCTGCTAATAAGATCATCAAAGCAGATTTGGGCTCTTCCTTCAGTAAGATGTGTCGGGTGTTTGTGCTGAGTGTGGGGGGACAATGCGTGGACTTGAATTGGATAGCTAGAGATGACAATATTCCCGAAAATGTCTCAGAGCGAGTCTTTCAGGAATCACAAAGCgagtggagagaagaagagaagactgCTGTGTGGATTGAGCGTCAGTTGAATTTCTTGGAGGTGGAAGAGGAAGACTTTTACATTGACTACACGTGTCAGACCTGGAGCGACAGAGGCTATTATTCAGCCTCCTTCACACTCCACCCTACAGATCCAAACTACCTGCTCCCTATTGGGGTACTACTGACGAGTCTGGTATTGATGTTTACTGTTAGTGTTGTTATTTACCATCGCTTCAAGATTGACATAGTGCTGTCGTTCAGGAGGATGTTCCCATTTCTCTACACAAACACAGAGTCTGATGGAAAGCTGTATGATGCATATGTGGCGTATCCCCATCTCTCTGGGAGCGTGGCCAGTGGGGAGGTGGAAATGTTTGCCCTCCACACATTGCCCCAGGTTCTCGAGGGGAGGTGTGGCTACAGGCTCTTTATTCTGGGCCGGGACAGCCTACCAGGGGACGCCGTAGTAGATGCTGTGGAGGAGAGTATGTGGGCCAGCCGGCGTCTCCTCCTTGTCTACACTGGCTCTACGTTCTGCAGTGGAGGTCAGagtgacagcagcagcagcgatgtCCTGGAGACCTGGAAGAGCTTTGAGAGGCAGATGGCTATGCACCGTGCACTGCTGGAGGGTTCCCTTAAGGTGGTTCTGGTGGAGCTGGAAGAGATCACCCCCACACAGCTCGCCTTCTTCCCCGAGTCGGTGCGCCACCTCCGGGAGCGCCAGGGTGCTGTCTGCTGGTGGAAGAGTAGCAGGACTAGGAGGACCAGAGGGTTGAGGTGTGGGAGGTGGGGGgaagaggaggtgaaggagaagagagggtcttcaccctctttctcctcaccctctcattCCTCATCCTCACACTTCTGGAAGGAACTGAGGTATTATATGCCTGTGAGGGGCAAGAGGACAAAGTGTCCAGAGAAGAACAGTCTGTTGAACATCTGA

Function

NR:

description
interleukin-1 receptor type 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974835.1 False 2207 mRNA 0.51 11 61919894 61948009
XM_036974837.1 False 1975 mRNA 0.51 11 61920151 61942087
XM_036974836.1 True 2164 mRNA 0.50 11 61920151 61956548

Neighbor

gene id symbol gene type direction distance location
il-1r1 il-1r1 coding downstream 3333 61890109 ~ 61916561 (-)
LOC110520322 LOC106586411 coding downstream 146922 61768503 ~ 61772972 (-)
LOC110520320 LOC106586468 coding downstream 191293 61663705 ~ 61728601 (-)
LOC110520317 ndf1 coding downstream 336834 61578579 ~ 61583060 (-)
LOC110520318 NA coding downstream 371642 61506974 ~ 61548252 (-)
il-1rii il-1rii coding upstream 823 61957371 ~ 61964014 (-)
LOC110520327 LOC106586477 coding upstream 10080 61966628 ~ 62081171 (-)
LOC110520328 LOC106586479 coding upstream 133715 62090263 ~ 62102123 (-)
LOC110520331 LOC106586481 coding upstream 170090 62126638 ~ 62129589 (-)
LOC110520337 LOC106575914 coding upstream 208295 62164843 ~ 62175163 (-)
G283398 NA non-coding downstream 14700 61897733 ~ 61905194 (-)
G283373 NA non-coding downstream 70195 61845415 ~ 61849699 (-)
G283282 NA non-coding downstream 221575 61693218 ~ 61698319 (-)
G283256 NA non-coding downstream 230319 61653325 ~ 61689575 (-)
G283251 NA non-coding downstream 272615 61643098 ~ 61647279 (-)
G283541 LOC106586480 non-coding upstream 191769 62148317 ~ 62151490 (-)
G283587 NA non-coding upstream 291699 62248247 ~ 62254684 (-)
G283589 NA non-coding upstream 312676 62269224 ~ 62271259 (-)
G283697 NA non-coding upstream 456168 62412716 ~ 62413039 (-)
G283899 NA non-coding upstream 521986 62478534 ~ 62480130 (-)
G277749 LOC106586429 other downstream 4330711 57584386 ~ 57589183 (-)
G277673 LOC106586423 other downstream 4516319 57402984 ~ 57403575 (-)
si:dkey-91i10.3 LOC106586420 other downstream 4622132 57270782 ~ 57297762 (-)
G275250 NA other downstream 6508407 55410143 ~ 55411487 (-)
LOC110520227 plekhm3 other downstream 6800682 55068639 ~ 55122013 (-)
G284018 NA other upstream 758027 62714575 ~ 62715177 (-)
G286522 NA other upstream 3013001 64969549 ~ 64970755 (-)
G286580 marco other upstream 3057711 65014259 ~ 65029736 (-)
G286638 NA other upstream 3098152 65054700 ~ 65075985 (-)
G286953 LOC107579696 other upstream 3278632 65235180 ~ 65235908 (-)

Expression


Co-expression Network