LOC110520341 (LOC106586488)


Basic Information

Item Value
gene id LOC110520341
gene name LOC106586488
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62200831 ~ 62203750 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597596.2
gaggagcagaCAGCTACAGGAAAAGACGAACATCTTTGGGCTATCACTAACGTTACTTACCACAGCGGCAAAGTCATAATGCGCTATATCGTATAAATTCTTGAAAATTaacatttgctttttggtcttactTTAagcttagcagtgtggttaatgttGGTGTTCGgtttcaaatcacattttaagaagattaATTGTAGAAAAAGTGTAGAAGTTTATGACGGTGGCTGAAACGACATATTTTTGAGAAAGCTTTACAAGCACTTCCGGTGTCaaagtttgtgttgtgttgtcaagATGGCTGGCCATGATCATCATCGTGACCATCTGTCTCTGTGCTTATGTGACTTAATCAGCTTACTATGGTCCATGGTGCTGCCATGCGTGTATCTGAGCTTGGTGCTGGCGCTGCTCCTGTTTCTACTCGTCATGGGTGTCCGAATATGGCTGCAGAGGAGTCGGAAAGCCCGCCTGGCTCAGAACAGTTCCCCAACTGTGGCCTTCTTCCACCCCTACTGCAATGCAGGAGGGGGCGGGGAGCGGGTGCTCTGGTGTGCCCTCAGAGCGCTTCAGAATAGATACCCAAGCGTTTCATTCGTTGTGTACACCGGTGACCATGGGGTGACAGGGGTGCAGATCCTCGAGGGCGCCCAACAACGCTTCAACATCAGGCTGCCTCATCCAGTGACTTTCATATTCCTGAAGAACCGTCTCCTGGTGGAGGCTAGCTCCTACCCCCACTTCACCCTGCTGGGGCAGAGCATGGGCTCAATGTTCCTGGGCTGGGAGGCCCTCACTGCCTTTGTACCAGACCTCTATATGGACTCCATGGGCTATGCCTTCACTCTGCCCATCTTCCGCTACCTGGGAGGATGCAGGGTGGGCAGCTATGTGCACTACCCCACCGTCAGTACTGACATGCTGtctgtggtgagagagagaaacccaaGGTTCAACAATGCAGACTACATCTCTGCTAACCCTCTTCTTAGTATGGCCAAGGTGATGTACTACTGTGCTTTTGCTCTGATCTACGGCCTAGCTGGCTCCTGCAGCGATGTCGTCATGGTCAACTCTACCTGGACACTGGGCCACATCCTGGCCCTGTGGCGCGCACCCAGCCGCACCGGTGTGGTCTATCCTCCCTGCGACGTCCGCTCCTTCCTCAACATCCCATTGGAGGATGAGGTGGAAGGGGAGGTGCTCGATGACAGGAAGTGCCATTCGATAGTGTCCGTGGGGCAGTTCCGACCAGAGAAAGACCACCGGCTGCAGATTAGGGCCTTCCGGAAGCTTCTGGACAGGAAAGGGGTAGGTCCAGGAGGGCGGGATTCTCTGAGGCTGGTGTTGATTGGTGGCTGCCGTAACCAGGAGGATGATGATAGAGTGCTGATGCTGAGGGGGTTGTGCCAGGAGCTGGGTGTGACAGAAAGAGTTGAGTTTAAACTTAACGTTCCCTTTGATGAGTTAAAGAGGGAGCTGGTGGACGCCACCATTGGTCTGCACACCATGTGGAATGAGCATTTTGGCATAGgtGTGGTAGAATGTATGGCTGCAGGTACAGTCATTCTGGCTCACAAGTCCGGCGGCCCCAAGCTGGACATTGTGGTTCCCTATGAGGGCGGGCAGACTGGCTTCCTGGCCGACAGCGAGGACAGCTACGCTACTGCCATGGAGACCATCCTGGCACTGTCGCCGTCGGCACGGCTGGAGATCCGGCGCAATGCTCGACGGTCTGTAGACCGTTTCTCCGACCAGGAGTTTGACGCCAGCTTCCTGTCTTCCATGGAATCTCTGATGGGAAAGCTGGAGTGATGAGGGAAAACCAATCACTCCCCCCTCACAGACTGAAACCCTTCCTCTCTGCTGCACTCACAGGCCTGATTGGCTGGGAAACTGATGGTCTATGAGACCTTTGCTGGCTTTATTCATAGGAATAAGTAAGGATGCTTGTATAACTTGCTCTGTCTTGCtagagttccagtgaagggacttGCTGGAAATTCTATTGATGTTTACACTCAAAAAGCACTTGGTCCTTATATCTAGTCCAATACGGCAGAGGGATCAAACATTGTGCTTTTTTTTTCTCACTGTGATTTTTTTTCTTGTTCTGTATGGGACTATGGCTCAGAATTGTAGATATTATACAAACaatgctttttaaaaaaaaggaAATGTATTGTTAATTTGTCTGAATCTTAAACGTAAACTTGTTGTA

Function

NR:

description
GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase-like

GO:

id name namespace
GO:0009058 biosynthetic process biological_process

KEGG:

id description
K03844 ALG11; alpha-1,2-mannosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597596.2 True 2221 mRNA 0.51 5 62200831 62203750

Neighbor

gene id symbol gene type direction distance location
LOC110520339 lrrc63 coding upstream 762 62193287 ~ 62200069 (+)
cnot11 LOC106586484 coding upstream 20549 62174585 ~ 62180282 (+)
LOC110520333 LOC106586480 coding upstream 44789 62129034 ~ 62156042 (+)
LOC110520332 LOC106586482 coding upstream 74348 62121199 ~ 62126483 (+)
LOC110520325 LOC106586471 coding upstream 359625 61836665 ~ 61841206 (+)
med4 med4 coding downstream 45709 62249459 ~ 62254811 (+)
LOC110520344 sucla2 coding downstream 51210 62254960 ~ 62272829 (+)
LOC110520345 NA coding downstream 77969 62281719 ~ 62286818 (+)
LOC110520346 htr2a coding downstream 163739 62367489 ~ 62408857 (+)
LOC110520349 lrch1 coding downstream 219670 62423414 ~ 62430935 (+)
G282815 LOC106575914 non-coding upstream 26469 62164883 ~ 62174362 (+)
G282822 NA non-coding upstream 28939 62169746 ~ 62171892 (+)
G282743 NA non-coding upstream 38872 62113060 ~ 62161959 (+)
G282907 NA non-coding downstream 99733 62303483 ~ 62320393 (+)
G282976 NA non-coding downstream 205473 62409223 ~ 62409441 (+)
G283779 NA non-coding downstream 313051 62516801 ~ 62518422 (+)
G283802 LOC106613263 non-coding downstream 372733 62576483 ~ 62577684 (+)
G282707 il-1rii other upstream 239356 61957388 ~ 61964066 (+)
G281996 NA other upstream 1163726 61033766 ~ 61037105 (+)
G281714 NA other upstream 1307053 60891524 ~ 60893778 (+)
G281591 LOC106586456 other upstream 1443481 60740239 ~ 60757350 (+)
LOC110504398 LOC106586506 other downstream 502581 62705451 ~ 62712740 (+)
G284313 NA other downstream 812576 63016326 ~ 63022591 (+)
LOC110520364 LOC106586514 other downstream 922140 63124380 ~ 63129015 (+)
G284537 NA other downstream 1063369 63267119 ~ 63312394 (+)

Expression


Co-expression Network