LOC110520342 (itm2b)


Basic Information

Item Value
gene id LOC110520342
gene name itm2b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62231915 ~ 62249501 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597597.2
GCCACGCCACTGCGCAGGACAGGAAATTGAGCTAATATTTTGTTGTCTGGAAAGAAAGCTTGGTAGCGACTGTTCTCGCCCTCTGTTGGTCGTTACATCAAAAAGAGAAAGAGGCGGAGCCACATCTAGCTATACTAAATACTGAAGAAAAGTTAAGAGTCTGTCTGCTATTGCGTTTGAGTTAGGCAGTACAAGTTGTGTTAAACTACGGCGTCTGATTTAGGAGCAGTTGCAGCAAGATACCAAACAATTTCGACGTGATAAACACAGTCGTTCTCTTTTTTTCGAAATAAAATAAAGTGTGCATTTCACGATGGTGAAGGTATCTTTTAATTCGGCCCTCGGGCAGAAGGAAGTGAAAAAGGACTGCGAAACCCTCATTCCCGAGGACAAGGATCCGGAGGTGGCTCTGCCAGTGCGTCAGCAGTCCAAGGCCTGGTGCTGGTGCGTGTGCCTGGGCTTGGCCCTGATGCTGTCTGGCGTGGTTGTGGGAGGGGCCTACCTTTACAGGTACTACATCCTGGAGGAGggcagggtgtttgtgtgtggggcaAAGTACCGAGAGGAGGACATTGTGAACTACCATGAGGAGACAATGATGacccaggaggaggaggatgtggagcTGGACCTGCCCTCCAGCTTtaagatgatccaggagaacaTCCGCATACTGGTGGACCAGGATGTGGCTCTCATCAACGTACCCGTGCCCGAGTTCGAAGACGGTGACCCCGCCGACATCGTCCACGACTTCCACAGGAAACTGACTGCCTACCTGGACCTGTTCCTGAACAAGTGCTATGTCATCCCCCTCAACACTTCCATCGTCATGCCTCCCAATGACTTCCTGGAGCTTTTGGTCAACATCAAGGCTGGTGCCTACATGCCCCAGTCCTACCTGGTCCATGAGGAGATGGTGGTGACAGAGCGCCTGGACAACGTGGAACAACTGGGATTCTTCATCAACAACCTCTGCCAGGGCAAGGACACCTATAAGCTTCAGCGCAGAGACAGGATCCTGGGTATGCAGAAGCGTGAAGCTCTCAACTGCCACAAGATCCGTCACTTTGAGAGCAAATTTGTGGTGGAGACCTTGATCTGTGAGCCCTAGTGACGTCGCCATGGGCAAAGTGTGACATCTTCTCTGTACAACCTCTTCATTTCACTGGGAGCGCAGTTGGAGATTTGTAATCCTCATTTTCTGTTTTAAATTTTCCCATTTTGTTATTCTACATCAGGTAGTTGTGTGATAATTTTTATGTGAAATGGGGCAATTTTGTCTGCTTAAAATCTGTCAATCAgttctgtgtttttttttcattatACAGGGATGCAATTATTCGATAGAGGGTTTCTATTTTTTGGAGGATATATTCAACGGCGGGACTGCTAGCTTGTGAAAAATGTAAACATAGATCTCAAAATCATCAGTGAGGTTAAGATGACTTTAGTAATCAAACTGGGATTAAGGGGCTTGAAGCAGATAATGTATGGTATAGTCAGATTTTCTGAAACTGAGTCTAATTTGTATTTTTGAATACAGAAACAAATGTGCAAAGGACTAGTCCAGGGTGTTTTATAGATGTTACATTTTCTGTTGAAACTGTTAAGATGTCTTAACTGGAAAACATCTTAAAATAAGTGTGGATACATGTTTCTTTCATCTAGCTTTAAGAATAAATAGAATAAATCAAAATCAAGATAGTTGTCTATATAATTTAAATCAGTTATTTTTTTCTTATACAACAAAGGAAAACACACTTTTTTTATATTGGGATAAAAGTATttagttcttttttttttttttccgaaCTCCATCTATATTACTAATTTGTATATAACCTCTGTAAAGATATGACCAACACCACAATAAATCTTAAACCAGTACTACG

Function

symbol description
itm2b Enables amyloid-beta binding activity. Involved in negative regulation of amyloid precursor protein biosynthetic process. Located in several cellular components, including Golgi apparatus; Golgi-associated vesicle membrane; and extracellular space. Is integral component of organelle membrane. Implicated in ITM2B-related cerebral amyloid angiopathy 1 and ITM2B-related cerebral amyloid angiopathy 2. Biomarker of ITM2B-related cerebral amyloid angiopathy 1.

NR:

description
integral membrane protein 2B-like

GO: NA

KEGG:

id description
K18264 ITM2B; integral membrane protein 2B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597597.2 True 1895 mRNA 0.43 6 62231915 62249501

Neighbor

gene id symbol gene type direction distance location
LOC110520336 lcp1 coding downstream 43828 62180497 ~ 62188087 (-)
LOC110520337 LOC106575914 coding downstream 56752 62164843 ~ 62175163 (-)
LOC118964371 NA coding downstream 66041 62165740 ~ 62165874 (-)
LOC110520331 LOC106586481 coding downstream 102326 62126638 ~ 62129589 (-)
LOC110520328 LOC106586479 coding downstream 129792 62090263 ~ 62102123 (-)
LOC110520347 lrch1 coding upstream 176183 62425684 ~ 62533307 (-)
trnal-caa NA coding upstream 293088 62542589 ~ 62542698 (-)
trnal-caa-2 NA coding upstream 293720 62543221 ~ 62543329 (-)
LOC110520350 LOC106586501 coding upstream 298366 62547867 ~ 62595699 (-)
LOC110520353 LOC106586507 coding upstream 498923 62748424 ~ 62780312 (-)
G283541 LOC106586480 non-coding downstream 80425 62148317 ~ 62151490 (-)
G283398 NA non-coding downstream 326721 61897733 ~ 61905194 (-)
G283373 NA non-coding downstream 382216 61845415 ~ 61849699 (-)
G283282 NA non-coding downstream 533596 61693218 ~ 61698319 (-)
G283256 NA non-coding downstream 542340 61653325 ~ 61689575 (-)
G283589 NA non-coding upstream 19723 62269224 ~ 62271259 (-)
G283697 NA non-coding upstream 163215 62412716 ~ 62413039 (-)
G283899 NA non-coding upstream 229033 62478534 ~ 62480130 (-)
G283973 NA non-coding upstream 365170 62614671 ~ 62621593 (-)
G283974 NA non-coding upstream 374707 62624208 ~ 62624555 (-)
G277749 LOC106586429 other downstream 4642732 57584386 ~ 57589183 (-)
G277673 LOC106586423 other downstream 4828340 57402984 ~ 57403575 (-)
si:dkey-91i10.3 LOC106586420 other downstream 4934153 57270782 ~ 57297762 (-)
G275250 NA other downstream 6820428 55410143 ~ 55411487 (-)
LOC110520227 plekhm3 other downstream 7112703 55068639 ~ 55122013 (-)
G284018 NA other upstream 465074 62714575 ~ 62715177 (-)
G286522 NA other upstream 2720048 64969549 ~ 64970755 (-)
G286580 marco other upstream 2764758 65014259 ~ 65029736 (-)
G286638 NA other upstream 2805199 65054700 ~ 65075985 (-)
G286953 LOC107579696 other upstream 2985679 65235180 ~ 65235908 (-)

Expression


Co-expression Network