med4 (med4)


Basic Information

Item Value
gene id med4
gene name med4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62249459 ~ 62254811 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597598.2
ACAAAATATTAGCTCAATTTCCTGTCCTGCGCAGTGGCGTGGCAACAACCATGGCGGTGGCTGACAAATCTACAAAAGAGCGGTTATTATTGGTACTGGACGATTTAGAGGTGTTATCCAGGGAATTGATAGAGATGCTTGCACTGTCAAGGAGCCAAAAACTCCCTCAAGGAGGTGAGGACACTCAGATCCTGGAGCTGCTGgtacagagagacaaagagttcCAGGAGCTGATGAGGGTGGCCCATGAGCAAGGCAAGGTGCACCAGGAGATGCAGGTCCTTGAGaaggaggtggagaagagagacagcGACATCCAGCAGCTCCAGAAACAGCTGAAGGAGGCTGAACATATACTTGCAACTGCTGTATACCAAGCAAAGGAGAAACTGAAATCTATTGATAAGGCCAAAAAAGGGAGCATCTCCTCAGAAGAGATCATCAAATATGCCCACAGGATCAGTGCCAGCAATGCAGTCTGTGCCCCTCTCAACTGGGTACCAGGTGATCCGCGTAGACCATACCCCACTGACCTGGAGATGCGCAGTGGATTGTTGGGTCACATGAGCAACCTGCCAACCAATGGCGTGAATGGACACCTCCCTGGAGATGCACTGGCAGCTGGGAGATTGCCAGATGTGCTCACCCCTCAGTACCCCTGGCAATCATCAGATGTCTCAGTGGGCATGCTCCCTCCTCACCATGGCAACGACTTTGGGCTGGAGCCCCCCGGCCACAACAAGGAGAACGAGGACGACGTGGAGGCCATGTCTACAGACTCATCTAGCAGCAGCAGTGACTCggactaagtgtgtgtgtctgtctctgtctgcccatctgtgtgtgtatatctgactCTGATTTGGGAATTGGACACACCCAGTACCTCGTAGACCCAGCTATTCATCACACCCATAACATTTACGATAAGCATCAGTTGATACAGGTTTAGCTATCCAATATAGCAAACAACTACATAGAATCCAGAGAATATTGAGAGATTCTCATCTCATGGTCTTGTTTTTCTCTGACCCTCTCTATTACCGGCTTGTTGATGAGACATTTGTACAACACTATCTGTGATCCCCAATGTAATATCACCAGCTCTCTCTAAAGTCCACTGTTTCAGTtcagggtgtattcattagtcagaTTCGGTAATGAAAAACGGTTTGCGATGAAAACAAATGTTTCTATTGACAAATTTGGGTAGGTCCCGTTTCGTTTGGTTCCTAGAGTAAAGGTTttcgttgcaaaatgttttgtaaCAGACCAAATGTTGTGCAATGGAATCCGACTAAGGAATACACCCCAGGGAAATGTCTGGTACTACGTGACTGATAACAGACATACATACTCCTTTCGTTTGCTATCAGGTTCCCCTTTATTTGTTtctttgctgttttttttttttttagactgGCAATGGGGAATAGTGTTGAAAAGTACATGTACCTTTTGTGTAGGAAGGAATATAACAgtatttcataaaaaaaaaaaaaaaagttgattcGAACCCAAGTGCTCCTTATCATCTCTGCTATTGCTGAAAACATGTCACCAGGAGTGGATTTTGACATTGTAGTTGCACTTACCTGAGTTTTTttactttctttcttttttttccaaAAGTAAAAACTGCTTATTTCAGGCAAGATTCATCAAGCACACCTTATATTCTTTATATTGAAAAACTGCATATTAATTGACTGACTTGTTGCTCCATGTGTAAATAAGGCTGTATATATTGTAGTTTTTTTCAGGCTTGTAAATAAATACAACTTTTGAGTAAATA

Function

symbol description
med4 Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of core mediator complex. Orthologous to human MED4 (mediator complex subunit 4).

NR:

description
mediator of RNA polymerase II transcription subunit 4

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016592 mediator complex cellular_component

KEGG:

id description
K15146 MED4; mediator of RNA polymerase II transcription subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597598.2 True 1795 mRNA 0.44 7 62249459 62254811

Neighbor

gene id symbol gene type direction distance location
LOC110520341 LOC106586488 coding upstream 45709 62200831 ~ 62203750 (+)
LOC110520339 lrrc63 coding upstream 49390 62193287 ~ 62200069 (+)
cnot11 LOC106586484 coding upstream 69177 62174585 ~ 62180282 (+)
LOC110520333 LOC106586480 coding upstream 93417 62129034 ~ 62156042 (+)
LOC110520332 LOC106586482 coding upstream 122976 62121199 ~ 62126483 (+)
LOC110520344 sucla2 coding downstream 149 62254960 ~ 62272829 (+)
LOC110520345 NA coding downstream 26908 62281719 ~ 62286818 (+)
LOC110520346 htr2a coding downstream 112678 62367489 ~ 62408857 (+)
LOC110520349 lrch1 coding downstream 168609 62423414 ~ 62430935 (+)
rubcnl rubcnl coding downstream 279835 62534646 ~ 62542031 (+)
G282815 LOC106575914 non-coding upstream 75097 62164883 ~ 62174362 (+)
G282822 NA non-coding upstream 77567 62169746 ~ 62171892 (+)
G282743 NA non-coding upstream 87500 62113060 ~ 62161959 (+)
G282907 NA non-coding downstream 48672 62303483 ~ 62320393 (+)
G282976 NA non-coding downstream 154412 62409223 ~ 62409441 (+)
G283779 NA non-coding downstream 261990 62516801 ~ 62518422 (+)
G283802 LOC106613263 non-coding downstream 321672 62576483 ~ 62577684 (+)
G282707 il-1rii other upstream 287984 61957388 ~ 61964066 (+)
G281996 NA other upstream 1212354 61033766 ~ 61037105 (+)
G281714 NA other upstream 1355681 60891524 ~ 60893778 (+)
G281591 LOC106586456 other upstream 1492109 60740239 ~ 60757350 (+)
LOC110504398 LOC106586506 other downstream 451520 62705451 ~ 62712740 (+)
G284313 NA other downstream 761515 63016326 ~ 63022591 (+)
LOC110520364 LOC106586514 other downstream 871079 63124380 ~ 63129015 (+)
G284537 NA other downstream 1012308 63267119 ~ 63312394 (+)

Expression


Co-expression Network