LOC110520344 (sucla2)


Basic Information

Item Value
gene id LOC110520344
gene name sucla2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62254960 ~ 62272829 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597600.2
TGTGTAAGGGGCACTTGGTTTACTACGCATGCGCCCAATTTATTGTTCGCTTCAGGGAAGGAAACATGGCGGCGTCCCTGATTTGTGGCCGATTTTCGGCTAGCCTGAGAAATTCTGGGGCCAGATCGACACTTACCACTGCATCCAAGgTGCTGGGTGGTTCCTCTGGCCTGCTTGGGCCTCAGCAGCAGTCCCCCCacctgcagcagcagcagaggaacCTCTCCCTGCACGAGTACATGAGCATCGGTCTGCTCAAAGAGGCTGGCGTCTGTGTGCCCGAGGGCAAGGTGGCCAGCTCACCCGATGAGGCCTACTCTGTTGCCAAGGAGATTGgcaCCAAGGATCTGGTGGTGAAGGCCCAGGTGTTGGCTGGAGGCCGAGGCAAAGGCACATTCGAAGGAGGGCTGAAGGGAGGAGTGAAGATTGTTTACTCGCCAGAGGAGGCCCGGGACATCTCCTCTCAGATGATTGGTCGTAAGCTGTACACCAAGCAGACAGGCGAGCAGGGCCGTATCTGTAACCAGGTGTTTATCTGTGAGCGCAGGTACCCCCGCAGGGAGTACTACTTCGCCATCACCATGGAGAGATCCTTCCAGGGCCCTGTGTTGATTGGCAGCTCTCAGGGGGGTGTGAACATTGAGGATGTGGCGGCGGAGAATCCCGACGCCATTGTGAAGGAGCCAATCGACATCATGGATGGAATCAAGATGGAACAGGCGGTTTCGaTTGCCACGAAGATGGGCTTCCCTGCTGCTCTGATCGGCGACGCAGCGGCTAACATAATCAAGCTGTACAACGTCTTCATGAAGTACGATGCCTCCATGCTAGAGATCAACCCCATGGTGGAGGACGCCTCTGGCCAggTGATGTGCATGGACGCCAAGATAAACTTTGACTCCAACGCGGCGTATCGCCAGAAGAAGGTGTTTGACATGCAGGACTGGACCCAGGAGGATGCCAGGGACCGACAGGCAGCCAAGGCTGACCTCAACTACATCGGCCTGGATGGATCCATCGGCTGTCTGGTAAATGGGGCTGGTCTAGCCATGGCCACCATGGACATCATCAAGCTGCATGGTGGCACTCCTGCCAACTTCCTGGATGTGGGGGGCGGAGCTACAGCCCACCAGGTGATGGAGGCCTTCAAACTTATCACCTCCGACAGGAAGGTGCAGGCCATCCTGGTGAACATCTTCGGTGGCATCATGAGGTGTGACATCATTGCTCAGGGCATCATCATGGCTGTTACAGACTTGGACCTGAAGATCCCCATTGTGGTACGGTTACAAGGATCCAGAGTGGACGATGCCAAAGCTTTGATCGCTGCTAGCCCACTGAAGCTCCTGGCCTGTGACGATCTGGACGAGGCTGCTAGAATGgtTGTAAAGCTTTCTGAGATTGTGTCGTTGGCTCAGGAGGCTCATGTGGACATCTCCTTCCAGCTGCCACTCTAAGCCATGCCCCCTAAACCTCGACACCCCACCCCCAACCTTTCGAACAGCAAGAAGAGCCTCTCACTACTGAGCGAATACTCCAATACAACACAGCCCATCAACTTCTCTGTTAGttctgattctctctctgtggcaAGGCTCCAAAATACACATGTGCATACACACCACTAATGTGGGAATTTTTGCTCTCCTAATCTCGactttcctccctctctgttttgtTATGTATGCCATGGCTAGTGTGTATTGTCTGTTCAAATGCAACACATTAACATGCTTTTCAGATCAGGCACGGGGGCGTTCCTTCAGATTATTCCATTATTACTCGCTCTGTTTTCACAATGATTCCTAGTTACTTcctcttcccccacctctctccttcagctCCCAGAATGCCTAGCTCTAGTCATAATGCACAACCCCCCCAACCTTGCTTGTTTCTTTGAGAGGGTGATAGACCTATCTATTTACCGGTACATTTTGGGAGAATTTCTGCTGTCTGTAAAGGTACAGCTAATTCCCCTTAGGCTTCGTTCTCCTGGATCACTTGGCTAAAGAGAGTTATGTCGCTGTCAGTCATAGTCCTCTCCCCTTTAAATCTCTTCCATCTGCCCCTACAGGAGAGGCTTTTACTGAGTGCTTCTGAGAATGGGAGATGCGATGGGGGAAGTTGGCCACTATGCAGAATGTAGCTCATCAGAAGCTAGGGGATAACACTTGAGCTTATACATTGCTGTTAGGAGGACCTCTTATGTCACTCATTTAATTTCCATGCAATTTTGAATGCATAGCTGGATAAAAGCTTTCTAGTACTCTCGTTTTGAACTAGTAAGAGTTCTATTCTTTGTGTGTGTTATCAAAACTACTGCCTATCTGGTTGTCAGCATGTTTGTGTATTTGTCTCTTCCTTCCCCTCACTCTCCCCTATAAGAGCCTGCTACAGTGTATGTGTAGTCTGCCACTATGTCATGGGGAAAACCTTTTTCACTTGGGTGTGTGCAGTGTCCTCTCAACTAAACTGTTAAAAGATTGTAATTAAgtcctctccatatctctctctctccattcctatctctctctgttactccctagCCCTCAGAACACAGAAACAGTTATTGTGAGTTGTCAAGACATTTATTATATCTTGTAAATAACGAGACCGCCGTTATCTTCTGTAAAATATTTATGCTTCTCTTGgggagtaaaaaaaaagaaaaaagaaatgtttgttttagtTTTGTTGCACTTGTACGGTACTTACAATGTGAAAGTTGTCTGCATCTCGTATGGCTGTTTGGCAACAAATGATAACAAAAGCACAAAGAAATATAAAGACCAGGCTCATGTGATGCCAAATTAGGTTCTATACTGTGAGACATTAGCATAAGTGTCAGATTCTTACATTTTCTACATGCCAGACAGTACATGTATTTCAGTTGCATAATAAGTCATTTTGGCTTCTATTTTAATTTCTGTTCTAACCAATGGACGATAAAGTTGTATTCTATTCCATCTCCTAATCCACTGGGGATACGTACTATGTTAAAAGTTTAAAAACAGGATTGTGTCAGAGCAGGGTTACCTCCTGTTGCCAGCACCGTCTGTCTCTGTATGGCACATGTGGACTGTGGCATTGGTTTTGACACGCTTCAAGGATACATTCGCCTTGAGCATCCTTGAAGCCAGGGCCCACAGCATATCAGGAGCTAAAGGCTGTGACCCAGTGGGTTATCGCTGTGTGGGTGGACTGAGTTGGTATACACTGTACTGTAATGAGGTGATGGGAGTTTGATTGCTGGAGACGATATTTTGCATTGCTTTAAGTACGTACCCGCCCCTTGGATCCTTTTCCACAGAGCTGAAGATTTGAATCACATTCTGCGCAAGTGTTTCTTTACCTCTACTTTACTCACACATTTTTGTGGTGACCCTCCCTACACTTTTCTCCCTGTCGATCGTGAATGATTTGTTTTACCAGTGAAACGTCCATTCAGCATCTGAACGCCAACCATTTGATCTCAGTTTCATGGAGTTATGCATTTTGTGTTGTTTAGAAGCAGTCCACAGTTTTCTGAATGATTTTCAGTAAATACATTTTCAGAGCAGATGGTTTTAAAACGGTAGCATACCTTCTGCTTTGTTTCTATCAAAGCACATATTTGGCCTAGTGTTATTCTCTGAGTTTTGGCCACGAGAGAGAAATGCAATCATTCGCACAATCATCCTAAAATCTCATGaggttttttttgtttgtcttgCAGTATCATTATACTATGCTATTGTATTTGGTTCTGTTATTCAGCTTTGATGCAACTTTATTCAACAAGCACCATTTTGCCACAGTAGCCTGTTTTCTAGGAGTAGAGCGCAGAAGCTTCGGGACCTTTAGCTGTCAGGAAGATGGGCCCAGAAAAGTTGGATTCGCAGCCACTCTGTTGCTGGACGTTTCTTTAAATGTTGAGAAAGAAGATGAAAACGATGTAGAGTCTGTTATTGTTCACTTACTgcttcaaaacacacacacacacacacaccatgattgTTTCCCAGAGCTAGCAGTTGAAGACTGGACTGCCTGGCCCTGATACTCTATTTGTCCTTCATAAACCTGTTCATGCTTGGGATAAGAATATGGGTAGCCTGAAGGCAAGAACAACACAGGAATTATGGAGATGTTCCCATATTTTAAAGGTAGGGGTGTGTCTCTCATGGCTTCATACATGCGACAGTGGCTGCCATCATAAAAAGCTATTGATGTAAAATGCAT

Function

symbol description
sucla2 Predicted to enable succinate-CoA ligase (GDP-forming) activity. Predicted to be involved in succinyl-CoA metabolic process and tricarboxylic acid cycle. Predicted to be part of succinate-CoA ligase complex. Predicted to be active in mitochondrion. Is expressed in several structures, including axis; hatching gland; mesoderm; musculature system; and solid lens vesicle. Human ortholog(s) of this gene implicated in mitochondrial DNA depletion syndrome 5. Orthologous to human SUCLA2 (succinate-CoA ligase ADP-forming subunit beta).

NR:

description
succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like

GO: NA

KEGG:

id description
K01900 LSC2; succinyl-CoA synthetase beta subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597600.2 True 4224 mRNA 0.47 11 62254960 62272829

Neighbor

gene id symbol gene type direction distance location
med4 med4 coding upstream 149 62249459 ~ 62254811 (+)
LOC110520341 LOC106586488 coding upstream 51210 62200831 ~ 62203750 (+)
LOC110520339 lrrc63 coding upstream 54891 62193287 ~ 62200069 (+)
cnot11 LOC106586484 coding upstream 74678 62174585 ~ 62180282 (+)
LOC110520333 LOC106586480 coding upstream 98918 62129034 ~ 62156042 (+)
LOC110520345 NA coding downstream 8890 62281719 ~ 62286818 (+)
LOC110520346 htr2a coding downstream 94660 62367489 ~ 62408857 (+)
LOC110520349 lrch1 coding downstream 150591 62423414 ~ 62430935 (+)
rubcnl rubcnl coding downstream 261817 62534646 ~ 62542031 (+)
dhrs12 LOC106586499 coding downstream 270748 62543577 ~ 62547782 (+)
G282815 LOC106575914 non-coding upstream 80598 62164883 ~ 62174362 (+)
G282822 NA non-coding upstream 83068 62169746 ~ 62171892 (+)
G282743 NA non-coding upstream 93001 62113060 ~ 62161959 (+)
G282907 NA non-coding downstream 30654 62303483 ~ 62320393 (+)
G282976 NA non-coding downstream 136394 62409223 ~ 62409441 (+)
G283779 NA non-coding downstream 243972 62516801 ~ 62518422 (+)
G283802 LOC106613263 non-coding downstream 303654 62576483 ~ 62577684 (+)
G282707 il-1rii other upstream 293485 61957388 ~ 61964066 (+)
G281996 NA other upstream 1217855 61033766 ~ 61037105 (+)
G281714 NA other upstream 1361182 60891524 ~ 60893778 (+)
G281591 LOC106586456 other upstream 1497610 60740239 ~ 60757350 (+)
LOC110504398 LOC106586506 other downstream 433502 62705451 ~ 62712740 (+)
G284313 NA other downstream 743497 63016326 ~ 63022591 (+)
LOC110520364 LOC106586514 other downstream 853061 63124380 ~ 63129015 (+)
G284537 NA other downstream 994290 63267119 ~ 63312394 (+)

Expression


Co-expression Network