LOC110520349 (lrch1)


Basic Information

Item Value
gene id LOC110520349
gene name lrch1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62423414 ~ 62430935 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002472969.2
AGCTCGTGTTGTTTTGGGACCCTCTTCTTGGTTGGACCCTTCTTTGTCGAGTTCTCTGCCCTGGCTGTCCAATGACATTCGAACAATTTTCTATTCTAATTTTGCATGCAGTTGTGGACTATGAGCCGCGACTTTCATTTTTAGCATGCATAACATTCTAGTAGTAGTTTTAACAAAAATGCAATGTTATATTTTAATCAAAACTTTTGCAGCAAGATTTTTTTAAGAATTCCAATAATTATGTAACACTTTCTTACGTGGGCTTgtcaaaggtaactgaactatgGCCCTCACTCAAGTGGCTACCAGAAGCACTGAGCTCAAGTGTCAAATTAATTTTGCCATCTACCTGCCTCCCAAGACTGAGAATGGGAAGTGTCCTGTCTTGTACTGGCTCTCAGGGCTACGACCATAGCTACTTCTTCATCAACGACCACATTAAGCACCATGCCAAGTTCCTCAACGCTTAAGACCATGACTGCTGGACCAGAACCCAACAAGGCATTCTCCTCTATACCTTCTCCTCCCAACTGTGCACCTGCTACTATGCACCTATCCCTTACAGAGAGACGTAGGTGCCTGGTGAACTGACAATAACCTGATACGCCTGGTGAGCTGAAATGAACACACCTGCTGTGTTGAGTCAAGCTGAGAAAAATAAAATAGTGAGAGCAGGATGTTTGTTAAGAGGAGCTTGCTTGCCACCCACATGGTCACTCCAACTGgataaaaactaaaaaaaatgTTACTCCTTTTGATTACATTTGTTTCCATCTTATGACCTTAGGCTCACACACTGACATCTGAGACCAATACAAAACACATGGACTAAAGACCAAACATAAGACTGTTTTTTTCAGATAAGGTCTTTACTCAAAGTGAtgagaaatatatacagtattcaCAGCAGTTACGGTGACGTTAAAGGGGTGTTTCATGCAATCAAATCCAAATTGCTGTACAACAAATACACCAATTTGACAAAAGGTACAAAATTGTATATGGTACATCAAAATGCAAAACAAACATACAAAAAAAACATCACTTTAAAATAAATGTCCTCCCAATCATAAGTACAAAACTGAGTACAAGCTTTCAGGACTATGTACAGAGAAAGGTAGAAAACAACTGCTCAACACTCAGCAGTCAACAGTTACTGTGGTTATAACATTTCTCACAATGATATAGTTCAAATTCATTTCATATTATGCCATACACACATTTCTAAATCAAAATGGAGCTCAGATTTGTTAGTTGCCAAAACAAACAACTATAAATACTTATTTTTAAAGTGCAGATCATTTCAGGCCTGTAGGCAGCCACACAGCAACTCCCAaaggcaggttggcatttattgtaaTGAATCTTGCCCTgcaggcagctctgcagagtggtcactagctggcacaacCACAAAGTCATATCAGATTTGAAccataaccacactgctaaccctaatgcccaACCATAGGTTT
>TU321741
GTATCCAGCTCGTGTTGTTTTGGGACCCTCTTCTTGGTTGGACCCTTCTTTGTCGAGTTCTCTGCCCTGGCTGTCCAATGACATTCGAACAATTTTCTATTCTAATTTTGCATGCAGTTGTGGACTATGAGCCGCGACTTTCATTTTTAGCATGCAAAAAATGCAATGTTATATTTTAATCAAAACTTTTGCAGCAAGATTTTTTTAAGAATTCCAATAATTATGTAACACTTTCTTACGTGGGCTTgtcaaaggtaactgaactatgGCCCTCACTCAAGTGGCTACCAGAAGCACTGAGCTCAAGTGTCAAATTAATTTTGCCATCTACCTGCCTCCCAAGACTGAGAATGGGAAGTGTCCTGTCTTGTACTGGCTCTCAGGGCTACGACCATAGCTACTTCTTCATCAACGACCACATTAAGCACCATGCCAAGTTCCTCAACGCTTAAGACCATGACTGCTGGACCAGAACCCAACAAGGCATTCTCCTCTATACCTTCTCCTCCCAACTGTGCACCTGCTACTATGCACCTATCCCTTACAGAGAGACGTAGGTGCCTGGTGAACTGACAATAACCTGATACGCCTGGTGAGCTGAAATGAACACACCTGCTGTGTTGAGTCAAGCTGAGAAAAATAAAATAGTGAGAGCAGGATGTTTGTTAAGAGGAGCTTGCTTGCCACCCACATGGTCACTCCAA
>TU321739
CTTTACTCAAAGTGAtgagaaatatatacagtattcaCAGCAGTTACGGTGACGTTAAAGGGGTGTTTCATGCAATCAAATCCAAATTGCTGTACAACAAATACACCAATTTGACAAAAGGTACAAAATTGTATATGGTACATCAAAATGCAAAACAAACATACAAAAAAAACATCACTTTAAAATAAATGTCCTCCCAATCATAAGTACAAAACTGAGTACAAGCTTTCAGGACTATGTACAGAGAAAGGTAGAAAACAACTGCTCAACACTCAGCAGTCAACAGTTACTGTGGTTATAACATTTCTCACAATGATATAGTTCAAATTCATTTCATATTATGCCATACACACATTTCTAAATCAAAATGGAGCTCAGATTTGTTAGTTGCCAAAACAAACAACTATAAATACTTATTTTTAAAGTGCAGATCATTTCAGGCCTGTAGGCAGCCACACAGCAACTCCCAaaggcaggttggcatttattgtaaTGAATCTTGCCCTgcaggcagctctgcagagtggtcactagctggcacaacCACAAAGTCATATCAGATTTGAAccataaccacactgctaaccctaatgcccaACCATAGGTTTTTAAATTTATGATTTTTTTCAATATAGCCAactttgactttgcagctggcccatctagcatAAATTCTTAATTCTgtctccagggcaagattcatgacaataaacatcaacctcCCAAAAGGTCAAAAGGATTGAATGACTAATCAATGAATAGTAAAGTAATGATCTCTTTTCATGTAAAAGTCCCCTCGTTAAGTTTCTAAAAAGGTTTGCAGCGCATGGCCCAAACCTCCATAATGACTAAAAGTTAAAAACTACACAGCAACTTTCTCTTAACAAATATCCCTGTCACATTTCCCTTCAGTCTCCACATCGCTCTGGTCGATCATAAAAATATTGAAGGAAACGTTAGAACTGGGAGAAGGGGATACTGGTATTTTTACCCATTAGTAGTTATATTTAGCTAAGTGGAAAGGCAATTACTTTGAGTATTAAAGTAGGATTAATGtgcatattttttaaatatttgtttatGCATTGTGAATTATTTTAAATATAAGCTACATTATATACAGGTAattgaccaaataaatgaaacacgtgagtaaatgagggatacaaagtatattgaaagcaggtgcttcgaCACAGGTGtgattcctgagttaattaagcaattaaagaCATCTCATcctgcttagggtcatgtatgtAGAAAAATTCCCAGTTGCCCATcattttaagtgtgtgtgtgtgcatcagtcaccagatctcaactcaattgaacacttatgggagatccTGGAGAGGCGACTGAGAcaacgttttccaccaccatcaacaaaacaccaaattgtgGAAGAATGGCATTGCATCCCTCCAAGAGTTCCAGCAAAGGCGCATGAAGTGTATTGAAGCGGTTTTGGCAGTTAGCTGTACATGAATTGCCGTACTGTTGTAAATATGATTACTTTGCATTATAGCTATGTTAACAAGATCACTCCAGATCCTGATTCTAAGAGATTGTTCACTTTGCCTGAGAAGTGTGGCTGATTATGTATTGCAGCGACTGTTAGTTTAACTAAAATATTTAAAAGAAATACTATTAATAAAGTTATAAATACTTTCTAAATACGAAACCCACTTGCACAAACCATCATCACATTACAGCTTCACATCACCACTTCTCATAAAAAAAGATATTACCATACTAAAGACATTAGATCATAAGTGGCTCTGAAAAAAAACTGTTTAGTTGTTTTGGCAACTGTCAAATCTATCCAGTGAAACATTGTGTTTGATTTTACTGCTAAGCTTAAGCTTTGGATACCAAGCTGTAGAAAATGCATTATATctgtacaataaaaaaaaaacaccaccgctcactcacacacacacctagtatGCTTATATTGGAGTGTTCTGCTGTTTGTGTAGTAGTAGGATATTGGGCACTCAAGCACTACTCTTCAGATGCTGCCAACAGTGTCTCTAAATCAGTGAATGCATTTCAGTTACTTTACTGGTCCTACATGACCACCTGACATGGTCAGCATCACCAGACACTTCAAGGCTATTTAGCAGTAAAGAATGTACTAGGACATACATACAAACCCATTCATTCGCTCCTTTTCATTCCATCTAACTcttttattctgtctctcacgcatgcagtcacacacacacacacacacaccacacgcaagTAATACCATTGACAAATAAGCAGTCTAGGGAATGGATCATAACAGTGTAGTAAGCCCACAACCTCCCCTGAGTTACATACCCACAGATTCCAATTCATAAACACCAGGTTCCCACAATCTTAGGACAAAATTTCAACCTCTACAGACGAGGTGAGAGACAAATTCAAagtacaacatacagtatacagaaCTATACCTAAAATATATTAGCTATTAGAGAAAAATATTTGGGGGATTATTTTCAATGGATACAACTCTCAACCACGTGGCCATATTTATTATAAATATCTTTAAATAGGGAAGCTGTAGCAGAGAGAGCGCTATGTTGGAGTGTTAGGTGTCTAGTCTGAAATGAGTGAGGGTGATAATACCTGGCCTTAGAAATAGAGGGGTAGAAACTGACAGCCCATGAAATGCATAGTCAATCATACACAGTGCAGCATGCTAGAAGTTGTTGTAGGCAGGGTTCAAGCTACAGGAGTGTCCAATGGTACTGGAGGCTCCCATAACAAACCAGGGCACTCCTGTAAGAATTAAAAACCATCAATGTGGACACCTCTGTCAGCTTCGAATATCCACATTAGTACAGCCCACTACTGTGTTTTAGGGCACCCCAGGCATCACATTATAACTTCAAACCATGGTTGTAAGAATCACGAAAGGAAGACTGCGATATAGGCTACAGTCCCTTGGAAAAGGCTATTTCAGGAGGTACAATGGCAACGGTGTTTGTCACTTTGACTAAATGAAACccagtggtgtgtgtctgtctatatgtTGGTCTCCTTCCCTCTCACGTGAAGAGAGCCTGCTTGGTTGAGGTCTCATCCACCAGCGCCTGGACCGTCACGCTCACCTTGATCATACCCTTCTCCTCTAGTATGTGATGAGGCAAACACAGCTTATCCTGTCGAGGTTCCACacacagaaagagcgagagagcgcgagagtggggggaggagggagcgagaatagtgagtgggacagaaagagagagagacgaggaggcaGAAAAAAACAAGTCAATCAAAAAGACACCTCAATGCAACTATGGTGATGAGTGAACATGCAGACAGTACAGGTGTATGTGGAAGTATGCTGAATAACCTATATGAAGAAACAGCACTTAATTCATCATCCTCCTTCAGAGAACAGCAACACAGAGACCGAATAGAATAACCCCAAACTGTACATTTATTACCAGTTCCATTCACACCATCAGATATACAAGTCAGAAAAAGCCTCAAGGTCCATCAAAATCAGCACTGACTGAGTTAAAACACAGCCAACTAATAGTATACAGTAATGGCAAACCAATTGCACTCCAACATAGTCGCTGGCAAGGTTGACATGACAACAGTGAATAAGCTAACAGAGTTAAAAGGAAAATATGGATAGAAACAGATGGACAGTTTGGAGGAAATTGTGGACACTACATCCATGGCTTTTAAATTATATCAGAAAAGAAGGTTAACCCTCATTGCTTTAAATTCAactacagacatacatacatcaATCAATGGACAGTAGCAGCACTGCTGGCCTCAAAGTATCAAAGTTCTCATTTAAAGGAATGAGCTTCTTGTACAGTTCACATATTACTGAACACATATCATATTCACTAGCCCTTCAACATAAAACCTCCAGATTAGTCCGTTCTGTAATATTGCATGTGCAAATGGTTTGTATGTTTAGAAATGATGGATCTTTTCACACCTTGTATTCAGTCCAGGTGCTTGGGAGTCCAATTTACCCTCCTGGGGTTTTAAAATAAGAAACGTAATATATGGCCTGACAGAATAGTACAACAGTATACATACTGAACCGTAGTCATGTAACTACCCCAGGGTAAATACACTATATTAGAACGAGAGTAACGTAGAGTGGTAGAGAGGTGCAGTAGTGATGTGATTATTGAACTTTATTTAGTGACAGTGTGCCGTGTGACATTTTACAGTCGTCATAAGTGGTGTGTTTATTAGGTCCAAACCTATACACTGTTTGTTGTGTCTTTGTCTCATGGATGGCATTACTACTGAGCGTTGCCATTTCCTTCAAACAGACATACAGGTGTAAATACAGTTGATATAATGTATCTGAGGAGTCTTGAAGAGACTGACCAATGCAACAAAAAAGCTCCAAGATCCAGCATGATGGAGGAGCTCTACTAGTGCTCTGTGCTTACCTGGACTGGACCCAAACTAGACAAGCTGTATGGAAACAAGAGACCGTATGACCACATGGGGAATCAGTGTGTATGACCCCATACCACGTGTCTGTGACCCCACCCCGGAGGGCATTAATAAATGAACAGTCTGACATGACAGGCTTGACTTGACGCATTGGCCAAAGAGTTGTAGAGAGACTTCAGGTAACTTTTGTGTACAAGCTCCAGGATTCTTTTCAACAGTTGGAATGTGCGTTATTGGTGGGGACAGTATACGAATGCATGTGTGTGAGGTTGTGAGTCGGTATTTATTGGAGCGCATCTGCAATCTGTGCATGAATGCAACTGTGTATGAGAGACACTTGTGTGTGTGAatcagacagaggagaagagcacAGAAACAAGAGGTTGAAGAAAAAGAGGAGGATTGGGGAGGAGAAGTGTTGGCACATGCGGAGGGCAGGGCTGAGAGGAGGGCGGGCTTTGACAGGAGATTGACAGGTAGTGTTACGTCAGCTCACTCCAGCTATAGGCCACAAACAGCAGGAGAAGACAGAACATGTGTAACAGGCTCGAGCAAATCAGGTCCCACGGCTGCCATGCTGGAGGCGGAGCCTGGGCCACCTGTGTAGAAGCCTCGGGGGCAGGGGTTGggacctctccctgtctgtctgagtcCCGCCCCTCTGTGGGGGTCTCCATGGCGACCAGGGCGCACACGGTGACCCGGATCGGCCGCAGGTGACACTGGATGATGTCATAAGCTGAGCAGAGGGAA

Function

symbol description
lrch1 Predicted to be involved in cellular response to chemokine and negative regulation of T cell migration. Predicted to be active in cytoplasm. Orthologous to human LRCH1 (leucine rich repeats and calponin homology domain containing 1).

NR:

description
leucine-rich repeat and calponin homology domain-containing protein 1-like isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002472969.2 False 1475 mRNA 0.40 3 62423420 62426300
TU321741 False 704 lncRNA 0.44 4 62423414 62425547
TU321739 True 5199 lncRNA 0.41 3 62425693 62430935

Neighbor

gene id symbol gene type direction distance location
LOC110520346 htr2a coding upstream 17024 62367489 ~ 62408857 (+)
LOC110520345 NA coding upstream 136602 62281719 ~ 62286818 (+)
LOC110520344 sucla2 coding upstream 150591 62254960 ~ 62272829 (+)
med4 med4 coding upstream 168609 62249459 ~ 62254811 (+)
LOC110520341 LOC106586488 coding upstream 219670 62200831 ~ 62203750 (+)
rubcnl rubcnl coding downstream 108346 62534646 ~ 62542031 (+)
dhrs12 LOC106586499 coding downstream 117277 62543577 ~ 62547782 (+)
LOC110504388 LOC106586502 coding downstream 172377 62598677 ~ 62612475 (+)
LOC110520352 LOC106586504 coding downstream 196619 62622919 ~ 62648515 (+)
LOC118964306 LOC106586506 coding downstream 272587 62698887 ~ 62701213 (+)
G282976 NA non-coding upstream 13979 62409223 ~ 62409441 (+)
G282907 NA non-coding upstream 103027 62303483 ~ 62320393 (+)
G282815 LOC106575914 non-coding upstream 249058 62164883 ~ 62174362 (+)
G282822 NA non-coding upstream 251528 62169746 ~ 62171892 (+)
G282786 NA non-coding upstream 293308 62126644 ~ 62130112 (+)
G283779 NA non-coding downstream 90501 62516801 ~ 62518422 (+)
G283802 LOC106613263 non-coding downstream 150183 62576483 ~ 62577684 (+)
G283800 NA non-coding downstream 152155 62578455 ~ 62579127 (+)
G283817 NA non-coding downstream 223187 62649487 ~ 62650344 (+)
LOC110520339 lrrc63 other upstream 226469 62193287 ~ 62200069 (+)
G282707 il-1rii other upstream 461945 61957388 ~ 61964066 (+)
G281996 NA other upstream 1386315 61033766 ~ 61037105 (+)
G281714 NA other upstream 1529642 60891524 ~ 60893778 (+)
LOC110504398 LOC106586506 other downstream 280031 62705451 ~ 62712740 (+)
G284313 NA other downstream 590026 63016326 ~ 63022591 (+)
LOC110520364 LOC106586514 other downstream 699590 63124380 ~ 63129015 (+)
G284537 NA other downstream 840819 63267119 ~ 63312394 (+)
G284599 NA other downstream 964631 63390931 ~ 63391284 (+)

Expression


Co-expression Network