LOC110520352 (LOC106586504)


Basic Information

Item Value
gene id LOC110520352
gene name LOC106586504
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62622919 ~ 62648515 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974879.1
gcaagttggttaagaacaaattcttatttacaattactgcctaccccggccaagccctaacccggacaactctGGGCCAAATGTACGCCGtgctatgggactctcaatcacggccggttgtgatacagcctgtgtgtgtgtgtgtgtgacacctgCAGATGAGATGAGCGTTCCTAAAAGTCCACATCAGGGAGCCAGTCCTCACATTGCCTCATAGCAGACACCTGAGGCAGGCTTGATATTGGAAGACATATCAGGCTACTGAATGACAAGGACTACACTCTGTCCTCCTAGGCACCCCTTTTAGGGATTTGTGTGTTTATAAAAGTACCCTCATGCACTGTACTGTTTTGGGCTTATGTTTGCACACCCTGTTTTTGGTtaatgtttttctatgtttgctGAGAAGGTGAAGAGAGGATGGCGGGCACACAGGGAtctgagaggatggagagaacgTGTGGAGGAAACAAAATCTGTCTGACATGTGAGGGATGAAACGCTCTGTCAGCTGACATTTTTACTGCAGCAGCTGCGTGAACAGACCAATGGAGCAATGACGTGTGTCGgcagAACAGTGTGACTGTACGAAGAGAACCGGGAGGTGACTGGCTGacccagggaggagagagacatattctgagacaaatacacacaaaaaacTGAGCagggctgtgtgagtgtgtgttaaacTCTCAGACGGAGTCCTGATCTAAACCGAACGCCGACACTCCCACatgtctcccccgtctccccccaCCCCTATCCCCTCTCTGCCCTCCTATCTACTGTGTGTCCTCTCCATGTTCCTGTCCCTGTCCAGACTGAGGGgcatcctcccccctctcctctcccttgtccTGTCCCTCCCCCCTGCTGCTAGCCAGTCAGTCATCACCACGTCCCAGGGCAGACTGAGGGGTCAGTTGACCCCCCTGCCTTCTGACCTGCTGGGCCCTGTGGTCCAGTACCTGGGGGTCCCCTACGCCCGCCCCCCCACCGGGGAGAGACGCTTCCAGCCCCCCGAGCCCCCACTGTCCTGGCCAGGGGTGAGGAACGCCACCCAGTTTTCCCCCGTCTGTCCCCAGCCTGTAGAGGAACACAGCCTGCTGACAGAGATGTTACCTCTCTGGTACTCTGCCAATCTGGACATAGCCAGCACATACCTGTCACAGCAGAGTGAAGACTGCCTCCACCTCAATATATACGTCCCTACTGAGGAAGACATCCATGATGAGGGCGGTCTGCGGCCAGTGATGGTGTATGTCCATGGAGGTTCTTATTCTGAAGGGAGCGGCAACATGATGGACGGCAGTGTCCTCGCTAGCTATGGAAACGTCATTGTCATCACAATCAACTACAGGCTGGGAGTACTGGGTTTCCTCAGTACGGGTGACCAGGCAGCTAAAGGCAACTATGGTCTGTTGGACCAGATCCAGGCTCTGCGTTGGGTGAAGGAGAACATTGCTGCATTCAGCGGAGACCCAGACAGAGTCACTGTGTTTGGCTCTGGGGCTGGAGCCTCCTGTGTCAGCCTACTAACTCTGTCCCACTACTCTGAGGCATGCTGTGTATCAGATCTGTTCCAGAAGGCGATCATCCAGAGTGGGACAGCCCTGTCCAGCTGGGCGGTCAACTACCAGCCAGGGAAGTATGCAAGGCTGCTGGGGGACAAGGTGGGCTGCAGCCTGGAGGACTCATCAGAGCTCATCGTCTGTCTGCAGGGGAAGACCTACCAGGAGCTGGTGGAACAGAATATCACTCCAGCTAAATACCACACCGCCTTCGGACCTGTCATCGACGGTGATGTCATCCCTGATGACCCCCAGATACTCATGGAGCAGGGAGAGTTCCTCAACTATGACATCATGCTGGGTGTGAACCAGGGGGAGGGGCTTCAGTTTGTTGACGGGATGGtggacagtgaggatggtgtctCCAGCGACGATTTTGACTTTGCCGTGTCGGACTTCGTGGACAGTCTCTACGGCTACCCGGAGGGGAAGGACACGCTGAGAGAGAGCATCAAGTTCATGTACACAGACTGGGCCGACCGGGAGAACCCTGAAACACGGCGGAAGACGCTAGTTGCGCTTTTCACTGATCACCAGTGGGTGGCGCCGGCGGTGGCCACAGCAGACCTCCATGCCCAGTACGGATCGCCAACATATTTCTACTCCTTCTACCACCACTGTCAGAGTGACGCGTCGCCCGCCTGGGCTGACTCCGCTCATGGAGATGAGGTGCCGTATGTGTTCGGTCTGCCGCTGATCGGCCCCACGGACCTCTTCAACTGTAACTTTTCTAAGAACGATGTGATGCTCAGCGCCGTGGTCATGACATACTGGACCAACTTCGCCAAGACAGGAGATCCTAACCAGCCGGTGCCCCAGGACACCAAGTTCATCCACACCAAACCCAACCGTTTTGAGGAGGTGGCCTGGGCCAAGTACACCCCCAAGGAACAGCTGTACCTGCACATCGGCCTGAAGCCACGCGTCAGAGACCACTACAGAGCCGCCAAGACAGCTTTCTGGCTACAGCTGGTGCCCCACCTCCACAACATCAACGAGTTGCTGCAGTATGTGTCCTCTGCAACCCACAGCCCTCCCCAGGACACCACCCCCCACTCCTACACCAAGCGGCTGTCTAAAGGCCTGGGCTTGGGTAGCACGCgccaccccaaccccaacccccctGCCACGCCCCAGGCTCCAGCACTGCAGGGGGAGGAGCTGCAGGTCCCCCACCCCGTCATGGAGGACTACTCCACTGAGCTGAGTGTTACCATCGCAGTGGGAGCCTCACTCCTTTTCCTCAACATCCTGGCCTTTGCAGCTCTGCTCTACAAGAAGGACAAACGCAAGATGGAACACCGGAGGCTGCCACGCCCACCTCCACGCCGTGACATCATGAACGCTGACATCACACACCAACTGCAGGGGGAGGGACTTCTGAAGCAGCTGGAGGCTGAGGCTCTGCACCAACACAACACGCTGGAGATACacgacacacacaacatacaccacacactggaggctctggacacGCTGGACACACAGGACATCTACAACACTCTGGACACCCTGCGACTGACCTGTCCACCTGACTACACCCTGACCCTGAGACGCTCCCCTGACGACGTGCCCCTGATGACCCCCAGGTCCCTGCCCATGACCCCTGGCTCTCACCCTGCCACCCCCATGACCCCTGGATCTGTTGTGGGGGTACAGCCCATGCAGGGCTATAGTCCTTACAGTAACACTCACCTGccccatacacacacgcacacacaccccagcacacacacacattctaccaCACGTGTATAACCACAGACAGAGATGGGGCAGAACGAAGCAGGATAGTTTCTCCAGCACCTAAGATGGCGGAACGATCCAGTCTGCCGTGTTGCATGAATAGAACAATGAGGGAGCGGAAGTGATGAACTCTGGGAGATTAAGTAATGTGCATCAGTAAAAAGAACATTATAAATGAGAACATCCAATATGGCTGCCAATTTGGTCAATACATCATGGAAACATTGCTTCTAAAAGCTGCGTCCGAAATGGCTGAAGTTGCCATGTGACTTGCCCTAGAGCGGGGCTGCTGTGATGTCCAGATCAGACTACTGACTGAACCCTCTGGGAACAACTTGAAGAACCTGTGAAATGTGAATGTAGAATATTTCAATTGCAATGAAATCCTTCAGAGGATCAATGTTCGCTGTAGTTCTGTGCTCAGCCAGGCCAGGGATGTAGtctgaaggacagacagacagacacacagacagacagagaacaacagatggacagggacagagacagactgtaTTCGTAGCACCTGGGACAAATTCCTCTGAATGGTTCAACAATAACAAGTTCAACAGTCCGAAGATCTACCAACCAGCAGTCTGTTCAAATATGTAAATAACTTGTAAACATAATGGAGAAAAGATGGTAAGATTTAAAGCTTTTACTGTTTTATTGCATTCAATGTTATTTAACGACCGTAGGTTTTAATTTGAGTTGATTATAAATGTATAGGTCCCCAGAACAAGATGTAACTTGACGCTTGACTAACCCTGACCACATCTATCAAGAtgtaaaccctgaccctaaacaCTAACCCTGACCACATCTATGCCCAACCTCTTCCCTGATCTGAAACTTGTACTGGGACATGGAACTGGGTCTATTTTTGGCCCCATCTCTCAGCCATGGACCCATACTTTTGTCCTTACCCCTGACCTGTAACCTttgaccctgacctctaaccctatcCTCATCCTAACTTTGACCTACATCCTAACTTGGACCCTCAACCTGTCTATGAACTCTTATTTCAGTCCTTACACTTATTGACCCCTTACCTCTAACCCTGTCTTCTAACCCTGATCCTGACCCTACCTACTTCCACCATGTCTCCCAGAGACAAAACTGATCAGTTGACCTGAGACCCAAATTCAATCATACTGAAGTCTAAAACGTTGCGATTAAAATCCGTCCCGACACAAATCCTGCATTTGTGAGCTTTTTGAACCATAAAATAAAACGAATATGAAATCATATACTGAAAGCTGAAATAGTGGATCTGAAAAACAATGATTCTTATTTGAAATACTCCCATAGGCTAgattaaaatattattttttttccaaatattttcagtttctGCCTTAACAGATGGAAGGATTCTttgctgtatgtactgtatgaacTTTCTGCTCCATTTTGTTAAATAAAGTATCAGTATTTTACCATTTATATGTttctcatatacagtgccttcggaaagtattcagaccccttgactttttccacattttggtacattacagccttattctaaaatttattaaatcgttttttcccccctcatcaatctacacacaa
>XM_036974880.1
CCCAAACACACTGAaagaacgacacacacacacacacaacagtattTCTAGTATAGCTGTTACCATTTACACCTCTACGTCTTCAGGATCCCATCCATACAGAGGCCTACTGCTCCTACCAGCGTTCTAGCTCTTGGGGGCCACAAAGTCAGATTTGTGCAGTGTATAATTTGTTTATAGAACCAGATCGTCTATGTAGGGAGAATCATCTTTGTTGTGTGGCAtcgtgggttagggttagagttagggtagcgTCATGGGAGGGGACATGAATCACTGAGCTGACATTAAGGGTTAGGGATTGAGGTGACTGGGTGAGTCATGTCATGTCTctctcactcatacacacacactgtccaccgGAATGGCCCCAGGAAAGAATACAGACATAGGGTAGTTATTGGAGACAGAAAAACACACTAATGTGATGTCATCTTGTGACTTAGTTTCATTGAAGGTTGTTTGTcacaaagttgtgtgtgtgtgattgtatgtaTTTTACCGTTGGTGCTGCAATGATACAATGTGTGGTTTTGGCAAAGCCTAGTGTTTAGAAGATATCCCATTCCATTTATGTTCCATCTTGTCTGAGACACAGTTATCCCAACATGGATTCAGAAGTTAAGATGGGCTGTGTTGTTGTGATTACTGATAGCCtgtcctgtggtgtgtgtgtatgtgtgtgtctgtcccagCTGATGAGGGTGCATGAATCTATTGGCTGCAGGCTCCATTCAACACTGTCCAATAgcatctggagagagacagagagagagagagagagaaagagagcgagaaagatgtGAACGTCGTAGTTTTTTCTTCTGTTAACGATAATCACGTCCTGTACGGTATTCAGTTGTTGCGGGGTTCAGACCACAAATACTTAGGCTATTCCCGGGAGCTCACGGCAACGGTGGAATTTACCCCAGGCACGTCGCTGGTGCACGAGGCTCTGCAGTCATCGACACACGGTCCCAGGATTTCTCTCAccgctctcctgtcctctctccccatcttctttTCTGTTTTCTTCGCAGTGAGGGATGAAACGCTCTGTCAGCTGACATTTTTACTGCAGCAGCTGCGTGAACAGACCAATGGAGCAATGACGTGTGTCGgcagAACAGTGTGACTGTACGAAGAGAACCGGGAGGTGACTGGCTGacccagggaggagagagacatattctgagacaaatacacacaaaaaacTGAGCagggctgtgtgagtgtgtgttaaacTCTCAGACGGAGTCCTGATCTAAACCGAACGCCGACACTCCCACatgtctcccccgtctccccccaCCCCTATCCCCTCTCTGCCCTCCTATCTACTGTGTGTCCTCTCCATGTTCCTGTCCCTGTCCAGACTGAGGGgcatcctcccccctctcctctcccttgtccTGTCCCTCCCCCCTGCTGCTAGCCAGTCAGTCATCACCACGTCCCAGGGCAGACTGAGGGGTCAGTTGACCCCCCTGCCTTCTGACCTGCTGGGCCCTGTGGTCCAGTACCTGGGGGTCCCCTACGCCCGCCCCCCCACCGGGGAGAGACGCTTCCAGCCCCCCGAGCCCCCACTGTCCTGGCCAGGGGTGAGGAACGCCACCCAGTTTTCCCCCGTCTGTCCCCAGCCTGTAGAGGAACACAGCCTGCTGACAGAGATGTTACCTCTCTGGTACTCTGCCAATCTGGACATAGCCAGCACATACCTGTCACAGCAGAGTGAAGACTGCCTCCACCTCAATATATACGTCCCTACTGAGGAAGACATCCATGATGAGGGCGGTCTGCGGCCAGTGATGGTGTATGTCCATGGAGGTTCTTATTCTGAAGGGAGCGGCAACATGATGGACGGCAGTGTCCTCGCTAGCTATGGAAACGTCATTGTCATCACAATCAACTACAGGCTGGGAGTACTGGGTTTCCTCAGTACGGGTGACCAGGCAGCTAAAGGCAACTATGGTCTGTTGGACCAGATCCAGGCTCTGCGTTGGGTGAAGGAGAACATTGCTGCATTCAGCGGAGACCCAGACAGAGTCACTGTGTTTGGCTCTGGGGCTGGAGCCTCCTGTGTCAGCCTACTAACTCTGTCCCACTACTCTGAGGATCTGTTCCAGAAGGCGATCATCCAGAGTGGGACAGCCCTGTCCAGCTGGGCGGTCAACTACCAGCCAGGGAAGTATGCAAGGCTGCTGGGGGACAAGGTGGGCTGCAGCCTGGAGGACTCATCAGAGCTCATCGTCTGTCTGCAGGGGAAGACCTACCAGGAGCTGGTGGAACAGAATATCACTCCAGCTAAATACCACACCGCCTTCGGACCTGTCATCGACGGTGATGTCATCCCTGATGACCCCCAGATACTCATGGAGCAGGGAGAGTTCCTCAACTATGACATCATGCTGGGTGTGAACCAGGGGGAGGGGCTTCAGTTTGTTGACGGGATGGtggacagtgaggatggtgtctCCAGCGACGATTTTGACTTTGCCGTGTCGGACTTCGTGGACAGTCTCTACGGCTACCCGGAGGGGAAGGACACGCTGAGAGAGAGCATCAAGTTCATGTACACAGACTGGGCCGACCGGGAGAACCCTGAAACACGGCGGAAGACGCTAGTTGCGCTTTTCACTGATCACCAGTGGGTGGCGCCGGCGGTGGCCACAGCAGACCTCCATGCCCAGTACGGATCGCCAACATATTTCTACTCCTTCTACCACCACTGTCAGAGTGACGCGTCGCCCGCCTGGGCTGACTCCGCTCATGGAGATGAGGTGCCGTATGTGTTCGGTCTGCCGCTGATCGGCCCCACGGACCTCTTCAACTGTAACTTTTCTAAGAACGATGTGATGCTCAGCGCCGTGGTCATGACATACTGGACCAACTTCGCCAAGACAGGAGATCCTAACCAGCCGGTGCCCCAGGACACCAAGTTCATCCACACCAAACCCAACCGTTTTGAGGAGGTGGCCTGGGCCAAGTACACCCCCAAGGAACAGCTGTACCTGCACATCGGCCTGAAGCCACGCGTCAGAGACCACTACAGAGCCGCCAAGACAGCTTTCTGGCTACAGCTGGTGCCCCACCTCCACAACATCAACGAGTTGCTGCAGTATGTGTCCTCTGCAACCCACAGCCCTCCCCAGGACACCACCCCCCACTCCTACACCAAGCGGCTGTCTAAAGGCCTGGGCTTGGGTAGCACGCgccaccccaaccccaacccccctGCCACGCCCCAGGCTCCAGCACTGCAGGGGGAGGAGCTGCAGGTCCCCCACCCCGTCATGGAGGACTACTCCACTGAGCTGAGTGTTACCATCGCAGTGGGAGCCTCACTCCTTTTCCTCAACATCCTGGCCTTTGCAGCTCTGCTCTACAAGAAGGACAAACGCAAGATGGAACACCGGAGGCTGCCACGCCCACCTCCACGCCGTGACATCATGAACGCTGACATCACACACCAACTGCAGGGGGAGGGACTTCTGAAGCAGCTGGAGGCTGAGGCTCTGCACCAACACAACACGCTGGAGATACacgacacacacaacatacaccacacactggaggctctggacacGCTGGACACACAGGACATCTACAACACTCTGGACACCCTGCGACTGACCTGTCCACCTGACTACACCCTGACCCTGAGACGCTCCCCTGACGACGTGCCCCTGATGACCCCCAGGTCCCTGCCCATGACCCCTGGCTCTCACCCTGCCACCCCCATGACCCCTGGATCTGTTGTGGGGGTACAGCCCATGCAGGGCTATAGTCCTTACAGTAACACTCACCTGccccatacacacacgcacacacaccccagcacacacacacattctaccaCACGTGTATAA

Function

NR:

description
neuroligin-4, X-linked-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974879.1 False 4895 mRNA 0.51 10 62622919 62648515
XM_036974880.1 True 3869 mRNA 0.55 9 62623416 62646952

Neighbor

gene id symbol gene type direction distance location
LOC110504388 LOC106586502 coding upstream 10444 62598677 ~ 62612475 (+)
dhrs12 LOC106586499 coding upstream 75137 62543577 ~ 62547782 (+)
rubcnl rubcnl coding upstream 80888 62534646 ~ 62542031 (+)
LOC110520349 lrch1 coding upstream 196619 62423414 ~ 62430935 (+)
LOC110520346 htr2a coding upstream 216523 62367489 ~ 62408857 (+)
LOC118964306 LOC106586506 coding downstream 50372 62698887 ~ 62701213 (+)
LOC110504398 LOC106586506 coding downstream 56936 62705451 ~ 62712740 (+)
LOC110520355 LOC105016359 coding downstream 134731 62770924 ~ 62815230 (+)
LOC118964307 NA coding downstream 209698 62858213 ~ 62860498 (+)
LOC110520359 LOC106586511 coding downstream 298803 62947318 ~ 63007919 (+)
G283800 NA non-coding upstream 43792 62578455 ~ 62579127 (+)
G283802 LOC106613263 non-coding upstream 45235 62576483 ~ 62577684 (+)
G283779 NA non-coding upstream 104497 62516801 ~ 62518422 (+)
G283817 NA non-coding downstream 972 62649487 ~ 62650344 (+)
G283833 NA non-coding downstream 6415 62654930 ~ 62655154 (+)
G283836 NA non-coding downstream 14865 62663380 ~ 62663709 (+)
G283840 NA non-coding downstream 21696 62670211 ~ 62670488 (+)
G283860 NA non-coding downstream 64628 62713143 ~ 62713848 (+)
LOC110520339 lrrc63 other upstream 425968 62193287 ~ 62200069 (+)
G282707 il-1rii other upstream 661444 61957388 ~ 61964066 (+)
G281996 NA other upstream 1585814 61033766 ~ 61037105 (+)
G281714 NA other upstream 1729141 60891524 ~ 60893778 (+)
G284313 NA other downstream 367811 63016326 ~ 63022591 (+)
LOC110520364 LOC106586514 other downstream 477375 63124380 ~ 63129015 (+)
G284537 NA other downstream 618604 63267119 ~ 63312394 (+)
G284599 NA other downstream 742416 63390931 ~ 63391284 (+)

Expression


Co-expression Network