LOC118964306 (LOC106586506)


Basic Information

Item Value
gene id LOC118964306
gene name LOC106586506
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62698887 ~ 62701213 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051351.1
GTCCCCTGGATATTGCGCACAGCGCGTGGGATCGAGATTATTTTTTACAATCCTTTCTTTCTTATCCCTTCCCTTCCTTTCCTTTCAACTGCACAGTGGAACAAGACGTAGATATATTCGTTTTTTCTTGGATTGTATAGGTTACTGGTTTTCAACTCTGTTATTTTCAATTGATAAAGTTGTAGTCTATTGAAACGTCAGTAAAATTTTGAATGCCAATATTATACTACGTAAATGATAAGACTTTTTTAATCATTTCTACCGTTGCCAAATCGCCCTTTGGATAAAAATGAGCACTTGATGGAAATTGGACTATAAGGAAATGAATAATCTTGATATCTTCGATTTGAAGGATTGTCAGTGAGCGGCCCTCCTATATAAGATGGTTcccagtgtgtgtggtgtgtccctGGCTGTGGTGTTGCTGACCCTGGTGTCTCCTGGTGGTGCCTGCCCTCTGCCCTGCTCTTGCTACCAGTCCACTGAACTACACTGCACCTTCAGATCTCTGGTCAACATACCACAGCCCCTACcacaacacacactacacatcaACCTGGGGTTCAACAGTATCAGCAGGATCCCAGACAGCTCATTGGCCGGTCTGAGGAGGCTGGCGCTGCTGATGCTTCATGGGAATGACATCCATGAGATTCCTGACGGAGCTTTCCAAGATCTGTC

Function

NR:

description
matrix-remodeling-associated protein 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051351.1 True 681 mRNA 0.44 3 62698887 62701213

Neighbor

gene id symbol gene type direction distance location
LOC110520352 LOC106586504 coding upstream 50372 62622919 ~ 62648515 (+)
LOC110504388 LOC106586502 coding upstream 86412 62598677 ~ 62612475 (+)
dhrs12 LOC106586499 coding upstream 151105 62543577 ~ 62547782 (+)
rubcnl rubcnl coding upstream 156856 62534646 ~ 62542031 (+)
LOC110520349 lrch1 coding upstream 272587 62423414 ~ 62430935 (+)
LOC110504398 LOC106586506 coding downstream 4238 62705451 ~ 62712740 (+)
LOC110520355 LOC105016359 coding downstream 82033 62770924 ~ 62815230 (+)
LOC118964307 NA coding downstream 157000 62858213 ~ 62860498 (+)
LOC110520359 LOC106586511 coding downstream 246105 62947318 ~ 63007919 (+)
LOC110520363 NA coding downstream 412454 63113667 ~ 63119407 (+)
G283840 NA non-coding upstream 28399 62670211 ~ 62670488 (+)
G283836 NA non-coding upstream 35178 62663380 ~ 62663709 (+)
G283833 NA non-coding upstream 43733 62654930 ~ 62655154 (+)
G283817 NA non-coding upstream 48543 62649487 ~ 62650344 (+)
G283860 NA non-coding downstream 11930 62713143 ~ 62713848 (+)
G283859 NA non-coding downstream 13643 62714856 ~ 62715183 (+)
G283867 NA non-coding downstream 21082 62722295 ~ 62722740 (+)
G284045 NA non-coding downstream 47215 62748428 ~ 62750633 (+)
G284057 NA non-coding downstream 62708 62763921 ~ 62768887 (+)
LOC110520346 htr2a other upstream 290030 62367489 ~ 62408857 (+)
LOC110520339 lrrc63 other upstream 501936 62193287 ~ 62200069 (+)
G282707 il-1rii other upstream 737412 61957388 ~ 61964066 (+)
G281996 NA other upstream 1661782 61033766 ~ 61037105 (+)
G281714 NA other upstream 1805109 60891524 ~ 60893778 (+)
G284313 NA other downstream 315113 63016326 ~ 63022591 (+)
LOC110520364 LOC106586514 other downstream 424677 63124380 ~ 63129015 (+)
G284537 NA other downstream 565906 63267119 ~ 63312394 (+)
G284599 NA other downstream 689718 63390931 ~ 63391284 (+)

Expression


Co-expression Network