LOC110520356 (LOC106586509)


Basic Information

Item Value
gene id LOC110520356
gene name LOC106586509
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62841460 ~ 62853914 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974884.1
CTATCTGAAACCACTCAGTCGTAACGATAgcagctagttggctagctatcTTTGGTTTTTAGTTTCAGTGCTAACTAGCTACATATCGGATACTTATCTAGTTTACTACCAAATGTGTCACAGTGATGTCTGCTTTCCAGTAACTCGATAAAAGACGCCAAGATCATGGCTAATGTTTGAAATGATATactattagctaacgttacagtagctagcaaaataaatacattaattgGCAGTTTCTGTATGAATTATAGTTAGTTGGCTGGCCAGTGATATCCAGTGATGCTTTCTGTAGTCAGGTGTCATGATGACCACCATCGTCCATGACACCACTGAGGCGGTGTGTCTGTGTCAGGAGTACAACCTGTTCTTGAAACCCATCGCCAAGATGACGGTGAGTGTGGCACTGCCCCAGCTGAAGCTGCCTGGGAAGAGCATCTCTAACTGGGAAGTGATGGAGAGGTTGAAGGCCATGGTAGCTCCTGAACAGTTCTCTGCCCTCAGGATCTCTAAGAGCACCATGGACTTCATCCGTTTTGAGGGCGAAGTGGAGAATAGAGGGGTGGTGAAGATCCTGCTGGCCAAACTGGATGGGAAGAGCATCAAACTCAGCGGCTTCACTGACATACTCAAGGTGCGTGCGGTAGAGAATAAGATGGACTTCCCGACACGTTATGATTGGGACTCGTTCTTCCGTGACGCCAAGGACATGAACGATACTGTTCCAGGAGAGAGGCCAGACACCATCCACCTGGAGGGCCTGCCCTGTCGCTGGTTTATCCTGCCTGACGGACCCCCCGACCGGCCCTCCGAGACCGCCCTGCAGGCGGTCTTCCAGGGTTTTGGTCCGGTGCGTCAGGTGGACATCCCCATGCTGGACCCGTACAGAGAGGACACTCTTGATAAGAACTTCAACACCTTCACCTTCGGCGGCCATCTTAACTTTGAGGCGTACGTCCAGTATCAGGATTATGATGGCTTCGCCAAGGCCATGGACACACTGAGAGGCATGAAGCTCATGTACAAAGGAGAGGATGGCAAGGCTGTGGCCTGCAACATCAAGGTGACCTTTGACACCAGTAAGCACCTGAGTGATGTGGCTCTGAAGAGACGCCAGCAGGAACGACTGAGAATACAGgagctggagagacagagggaggagcagAAAcgcagagagaaggaggaggaggaacgcaaggaggaggagagGAAACacaaagaggtggaggaggaggaaaaggtgcAGAGGAAAGTGGAGAGGATACGGAAACGAGAGCagaagctgagagagagggaagagaagaggaacatAAAGAAGGTGAAGAGGAGGCAGGAGGTGGAGCAGAAGAAGTTGCAGTTGAAGATCGCGACGGAGGAGAGAAGGCTGTTGTTGGCTCAGCGGAACCTGGAGTCTATACGCCTTATGGCTGAACTACTGGGCAGGGCCAAGgCTCtgaaacagcagcagcaggagaaagagagagcggaaaGAGAGGAGCAAGATAAGGAGGAGTTAGCCAGGCAAAAGGAGGAGTTAGCCAGGCAGAAGGAGGAGTTAGCGCGGCAGAAGCAGCTCGAGGCCTGCAGGCGGGAGCAGGAGGCGGAGCTGAGACGTGTGGAGTTAGAGAAGGGGCGTGCCTTGGATCTgcaacgcagagagagagagctgagggagAGACTGGTTAGTAACCTGCTGAAGAAggctggaggaaagggagagaaccAGACCTCTATCACCCAGCCCTCTGCCCTGACCATGCCCAGGGGAGAGAGCTCCGACCTGGGGAAGACGGCCAGGGCCCTGGGGGTGAACGGGGTTAGACcaaggggagaggagagcccCAGAGCTACCGTACGATCACACGTCACTGAGaaacagataggagagagggagaagaggcgaggagaatgggaggagaggcgagggggcagagaggacagggaaggaggcatggaggagagaagaggttaTGGATTGAGAAgtagagaggtgagggagaggagtCGGTCCCACAGCCGGGGCAGGAGGTGGTACAGCCGGACACGCAGCGGTAGCAGGAAAAGAAGAAGCTCTAGTAGAAAGAGTAGTGATAgtcagaggagaaggagaagtgaTAGCAGACGGAGGAGAAGTGGTAGTTCTAAGAAGAAGAGAAGCTATAGCAGGGGGAGGAGTGGTAGTTGTATCCACAGGAGACACAGTCACCATGGACGGGGCTGCAGCAGCAGGAGCACGAGCCGTGATTGGAGCAGAAGCTCTAGTGGGAGGAGCCACAGCAGATTGAGGAGGACACATAGACATAGAGACAGCAGGCACAGATCTAGTAGCAGCAGCTctaggagtagagagaggagcagcgagaaagacaggagcagggagaaggagaggagtggagacaggAGCAGCGATAGAGACAGGGACTCCAGGAAGCATAGTAGTAGTTATTCCAGACGACACTAAACGGTCAACACAgccagaggagacagaagaggacCCTATGCCTGGGCCTAGTTTAAGTAATACACGGTCAGGGTGGTTCTGTATGCTGCTACACACTGTCTCTGGACCATATCAGCTTCTTAcagtctccacacacacacacacctctttctctccctccctccaccaatGCTCTTCGTTCATCTGTAGGTTACAGAATGCTACACTGCTATTATGTTCTGTTTGACACATGTAGTGTAGATGCCATATGTACTGTAGTTTGATCACTTGGTTAGTATGTGTCTCCTTTGAGGAAAGATAGAAAAAATACTTAAACTTTTTAGGGTCACAGTGAATGGCCTGTTTTGTGTTTCAGAATAACAATATTACTGGGTTTCTGGGAACTGTAGTTCAGTATTAGAGCAGGGATCTTTAGTCCTATGGCCAGACACCACACAGTCTCAGTAGATAGACAGCTGAAGTCTAAGTCAAGTGTTTTCCCCTAGGATAAAGAGAACGAAGCCAAagacaatcagacaaaaaaatgtCCAACAGCTTAACCAGACACACGTTTCCGAATTCCACGTCTAACCACCAGACTAGACAGTAGTTTCAGTTCTAACTTGATGTCACTAGAACATAAAGTGGTTCTGTGAGATTTAATGATGTCTGCAGTGTTCTGGTGAGAGAGAATTGTAGGTGACTTTGTTTTGACGCACCAACCCCAGACTGAAGCCTAGTGTCACCATGTTAACTTTTTGAATGGTGTTCCTGCTAGTTCAAGCCAggagcctgcctgtctgtgtacaTTTAATTTGCCTTATTGATGAGTGTGTGAACAGAGCAGAGTGAGTGGGTAACGTTGTATATAGGTTGTATAAAGGTTCAGGGGGTCGTCAATCTGCTGTATATGCtcatgtttctctgttctgatgggTGGCTGCATGTCCTCAACACACTGTGTCATTTTATTTGTTGAAATAAAGAAACGACAGAAAATA
>XM_021597617.2
AGTTCATCCAACTCTAAAGTTTCCGCCAGTAGCTTCATTTGTTGTGGAGATAACTGCAGTTAACTGACGTATTGTGAACATATTCTCGTTTTAACACATACAAATAACATAAAGTACATATATTTAGCTGCTGGTGAAACAGCTTTCTGTAGTCAGGTGTCATGATGACCACCATCGTCCATGACACCACTGAGGCGGTGTGTCTGTGTCAGGAGTACAACCTGTTCTTGAAACCCATCGCCAAGATGACGGTGAGTGTGGCACTGCCCCAGCTGAAGCTGCCTGGGAAGAGCATCTCTAACTGGGAAGTGATGGAGAGGTTGAAGGCCATGGTAGCTCCTGAACAGTTCTCTGCCCTCAGGATCTCTAAGAGCACCATGGACTTCATCCGTTTTGAGGGCGAAGTGGAGAATAGAGGGGTGGTGAAGATCCTGCTGGCCAAACTGGATGGGAAGAGCATCAAACTCAGCGGCTTCACTGACATACTCAAGGTGCGTGCGGTAGAGAATAAGATGGACTTCCCGACACGTTATGATTGGGACTCGTTCTTCCGTGACGCCAAGGACATGAACGATACTGTTCCAGGAGAGAGGCCAGACACCATCCACCTGGAGGGCCTGCCCTGTCGCTGGTTTATCCTGCCTGACGGACCCCCCGACCGGCCCTCCGAGACCGCCCTGCAGGCGGTCTTCCAGGGTTTTGGTCCGGTGCGTCAGGTGGACATCCCCATGCTGGACCCGTACAGAGAGGACACTCTTGATAAGAACTTCAACACCTTCACCTTCGGCGGCCATCTTAACTTTGAGGCGTACGTCCAGTATCAGGATTATGATGGCTTCGCCAAGGCCATGGACACACTGAGAGGCATGAAGCTCATGTACAAAGGAGAGGATGGCAAGGCTGTGGCCTGCAACATCAAGGTGACCTTTGACACCAGTAAGCACCTGAGTGATGTGGCTCTGAAGAGACGCCAGCAGGAACGACTGAGAATACAGgagctggagagacagagggaggagcagAAAcgcagagagaaggaggaggaggaacgcaaggaggaggagagGAAACacaaagaggtggaggaggaggaaaaggtgcAGAGGAAAGTGGAGAGGATACGGAAACGAGAGCagaagctgagagagagggaagagaagaggaacatAAAGAAGGTGAAGAGGAGGCAGGAGGTGGAGCAGAAGAAGTTGCAGTTGAAGATCGCGACGGAGGAGAGAAGGCTGTTGTTGGCTCAGCGGAACCTGGAGTCTATACGCCTTATGGCTGAACTACTGGGCAGGGCCAAGgCTCtgaaacagcagcagcaggagaaagagagagcggaaaGAGAGGAGCAAGATAAGGAGGAGTTAGCCAGGCAAAAGGAGGAGTTAGCCAGGCAGAAGGAGGAGTTAGCGCGGCAGAAGCAGCTCGAGGCCTGCAGGCGGGAGCAGGAGGCGGAGCTGAGACGTGTGGAGTTAGAGAAGGGGCGTGCCTTGGATCTgcaacgcagagagagagagctgagggagAGACTGGTTAGTAACCTGCTGAAGAAggctggaggaaagggagagaaccAGACCTCTATCACCCAGCCCTCTGCCCTGACCATGCCCAGGGGAGAGAGCTCCGACCTGGGGAAGACGGCCAGGGCCCTGGGGGTGAACGGGGTTAGACcaaggggagaggagagcccCAGAGCTACCGTACGATCACACGTCACTGAGaaacagataggagagagggagaagaggcgaggagaatgggaggagaggcgagggggcagagaggacagggaaggaggcatggaggagagaagaggttaTGGATTGAGAAgtagagaggtgagggagaggagtCGGTCCCACAGCCGGGGCAGGAGGTGGTACAGCCGGACACGCAGCGGTAGCAGGAAAAGAAGAAGCTCTAGTAGAAAGAGTAGTGATAgtcagaggagaaggagaagtgaTAGCAGACGGAGGAGAAGTGGTAGTTCTAAGAAGAAGAGAAGCTATAGCAGGGGGAGGAGTGGTAGTTGTATCCACAGGAGACACAGTCACCATGGACGGGGCTGCAGCAGCAGGAGCACGAGCCGTGATTGGAGCAGAAGCTCTAGTGGGAGGAGCCACAGCAGATTGAGGAGGACACATAGACATAGAGACAGCAGGCACAGATCTAGTAGCAGCAGCTctaggagtagagagaggagcagcgagaaagacaggagcagggagaaggagaggagtggagacaggAGCAGCGATAGAGACAGGGACTCCAGGAAGCATAGTAGTAGTTATTCCAGACGACACTAAACGGTCAACACAgccagaggagacagaagaggacCCTATGCCTGGGCCTAGTTTAAGTAATACACGGTCAGGGTGGTTCTGTATGCTGCTACACACTGTCTCTGGACCATATCAGCTTCTTAcagtctccacacacacacacacctctttctctccctccctccaccaatGCTCTTCGTTCATCTGTAGGTTACAGAATGCTACACTGCTATTATGTTCTGTTTGACACATGTAGTGTAGATGCCATATGTACTGTAGTTTGATCACTTGGTTAGTATGTGTCTCCTTTGAGGAAAGATAGAAAAAATACTTAAACTTTTTAGGGTCACAGTGAATGGCCTGTTTTGTGTTTCAGAATAACAATATTACTGGGTTTCTGGGAACTGTAGTTCAGTATTAGAGCAGGGATCTTTAGTCCTATGGCCAGACACCACACAGTCTCAGTAGATAGACAGCTGAAGTCTAAGTCAAGTGTTTTCCCCTAGGATAAAGAGAACGAAGCCAAagacaatcagacaaaaaaatgtCCAACAGCTTAACCAGACACACGTTTCCGAATTCCACGTCTAACCACCAGACTAGACAGTAGTTTCAGTTCTAACTTGATGTCACTAGAACATAAAGTGGTTCTGTGAGATTTAATGATGTCTGCAGTGTTCTGGTGAGAGAGAATTGTAGGTGACTTTGTTTTGACGCACCAACCCCAGACTGAAGCCTAGTGTCACCATGTTAACTTTTTGAATGGTGTTCCTGCTAGTTCAAGCCAggagcctgcctgtctgtgtacaTTTAATTTGCCTTATTGATGAGTGTGTGAACAGAGCAGAGTGAGTGGGTAACGTTGTATATAGGTTGTATAAAGGTTCAGGGGGTCGTCAATCTGCTGTATATGCtcatgtttctctgttctgatgggTGGCTGCATGTCCTCAACACACTGTGTCATTTTATTTGTTGAAATAAAGAAACGACAGAAAATA
>XM_036974883.1
AAAAGGCTTTCGTATGTCTATGCTTTCTGTAGTCAGGTGTCATGATGACCACCATCGTCCATGACACCACTGAGGCGGTGTGTCTGTGTCAGGAGTACAACCTGTTCTTGAAACCCATCGCCAAGATGACGGTGAGTGTGGCACTGCCCCAGCTGAAGCTGCCTGGGAAGAGCATCTCTAACTGGGAAGTGATGGAGAGGTTGAAGGCCATGGTAGCTCCTGAACAGTTCTCTGCCCTCAGGATCTCTAAGAGCACCATGGACTTCATCCGTTTTGAGGGCGAAGTGGAGAATAGAGGGGTGGTGAAGATCCTGCTGGCCAAACTGGATGGGAAGAGCATCAAACTCAGCGGCTTCACTGACATACTCAAGGTGCGTGCGGTAGAGAATAAGATGGACTTCCCGACACGTTATGATTGGGACTCGTTCTTCCGTGACGCCAAGGACATGAACGATACTGTTCCAGGAGAGAGGCCAGACACCATCCACCTGGAGGGCCTGCCCTGTCGCTGGTTTATCCTGCCTGACGGACCCCCCGACCGGCCCTCCGAGACCGCCCTGCAGGCGGTCTTCCAGGGTTTTGGTCCGGTGCGTCAGGTGGACATCCCCATGCTGGACCCGTACAGAGAGGACACTCTTGATAAGAACTTCAACACCTTCACCTTCGGCGGCCATCTTAACTTTGAGGCGTACGTCCAGTATCAGGATTATGATGGCTTCGCCAAGGCCATGGACACACTGAGAGGCATGAAGCTCATGTACAAAGGAGAGGATGGCAAGGCTGTGGCCTGCAACATCAAGGTGACCTTTGACACCAGTAAGCACCTGAGTGATGTGGCTCTGAAGAGACGCCAGCAGGAACGACTGAGAATACAGgagctggagagacagagggaggagcagAAAcgcagagagaaggaggaggaggaacgcaaggaggaggagagGAAACacaaagaggtggaggaggaggaaaaggtgcAGAGGAAAGTGGAGAGGATACGGAAACGAGAGCagaagctgagagagagggaagagaagaggaacatAAAGAAGGTGAAGAGGAGGCAGGAGGTGGAGCAGAAGAAGTTGCAGTTGAAGATCGCGACGGAGGAGAGAAGGCTGTTGTTGGCTCAGCGGAACCTGGAGTCTATACGCCTTATGGCTGAACTACTGGGCAGGGCCAAGgCTCtgaaacagcagcagcaggagaaagagagagcggaaaGAGAGGAGCAAGATAAGGAGGAGTTAGCCAGGCAAAAGGAGGAGTTAGCCAGGCAGAAGGAGGAGTTAGCGCGGCAGAAGCAGCTCGAGGCCTGCAGGCGGGAGCAGGAGGCGGAGCTGAGACGTGTGGAGTTAGAGAAGGGGCGTGCCTTGGATCTgcaacgcagagagagagagctgagggagAGACTGGTTAGTAACCTGCTGAAGAAggctggaggaaagggagagaaccAGACCTCTATCACCCAGCCCTCTGCCCTGACCATGCCCAGGGGAGAGAGCTCCGACCTGGGGAAGACGGCCAGGGCCCTGGGGGTGAACGGGGTTAGACcaaggggagaggagagcccCAGAGCTACCGTACGATCACACGTCACTGAGaaacagataggagagagggagaagaggcgaggagaatgggaggagaggcgagggggcagagaggacagggaaggaggcatggaggagagaagaggttaTGGATTGAGAAgtagagaggtgagggagaggagtCGGTCCCACAGCCGGGGCAGGAGGTGGTACAGCCGGACACGCAGCGGTAGCAGGAAAAGAAGAAGCTCTAGTAGAAAGAGTAGTGATAgtcagaggagaaggagaagtgaTAGCAGACGGAGGAGAAGTGGTAGTTCTAAGAAGAAGAGAAGCTATAGCAGGGGGAGGAGTGGTAGTTGTATCCACAGGAGACACAGTCACCATGGACGGGGCTGCAGCAGCAGGAGCACGAGCCGTGATTGGAGCAGAAGCTCTAGTGGGAGGAGCCACAGCAGATTGAGGAGGACACATAGACATAGAGACAGCAGGCACAGATCTAGTAGCAGCAGCTctaggagtagagagaggagcagcgagaaagacaggagcagggagaaggagaggagtggagacaggAGCAGCGATAGAGACAGGGACTCCAGGAAGCATAGTAGTAGTTATTCCAGACGACACTAAACGGTCAACACAgccagaggagacagaagaggacCCTATGCCTGGGCCTAGTTTAAGTAATACACGGTCAGGGTGGTTCTGTATGCTGCTACACACTGTCTCTGGACCATATCAGCTTCTTAcagtctccacacacacacacacctctttctctccctccctccaccaatGCTCTTCGTTCATCTGTAGGTTACAGAATGCTACACTGCTATTATGTTCTGTTTGACACATGTAGTGTAGATGCCATATGTACTGTAGTTTGATCACTTGGTTAGTATGTGTCTCCTTTGAGGAAAGATAGAAAAAATACTTAAACTTTTTAGGGTCACAGTGAATGGCCTGTTTTGTGTTTCAGAATAACAATATTACTGGGTTTCTGGGAACTGTAGTTCAGTATTAGAGCAGGGATCTTTAGTCCTATGGCCAGACACCACACAGTCTCAGTAGATAGACAGCTGAAGTCTAAGTCAAGTGTTTTCCCCTAGGATAAAGAGAACGAAGCCAAagacaatcagacaaaaaaatgtCCAACAGCTTAACCAGACACACGTTTCCGAATTCCACGTCTAACCACCAGACTAGACAGTAGTTTCAGTTCTAACTTGATGTCACTAGAACATAAAGTGGTTCTGTGAGATTTAATGATGTCTGCAGTGTTCTGGTGAGAGAGAATTGTAGGTGACTTTGTTTTGACGCACCAACCCCAGACTGAAGCCTAGTGTCACCATGTTAACTTTTTGAATGGTGTTCCTGCTAGTTCAAGCCAggagcctgcctgtctgtgtacaTTTAATTTGCCTTATTGATGAGTGTGTGAACAGAGCAGAGTGAGTGGGTAACGTTGTATATAGGTTGTATAAAGGTTCAGGGGGTCGTCAATCTGCTGTATATGCtcatgtttctctgttctgatgggTGGCTGCATGTCCTCAACACACTGTGTCATTTTATTTGTTGAAATAAAGAAACGACAGAAAATA

Function

NR:

description
A-kinase anchor protein 17A-like

GO: NA

KEGG:

id description
K13169 AKAP17, SFRS17; A-kinase anchor protein 17

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974884.1 False 3444 mRNA 0.50 9 62841460 62853625
XM_021597617.2 False 3298 mRNA 0.51 9 62841460 62853882
XM_036974883.1 True 3178 mRNA 0.51 9 62841460 62853914

Neighbor

gene id symbol gene type direction distance location
LOC110520357 asmt coding downstream 363 62832908 ~ 62841097 (-)
LOC110520353 LOC106586507 coding downstream 61148 62748424 ~ 62780312 (-)
LOC110520350 LOC106586501 coding downstream 245761 62547867 ~ 62595699 (-)
trnal-caa-2 NA coding downstream 298131 62543221 ~ 62543329 (-)
trnal-caa NA coding downstream 298762 62542589 ~ 62542698 (-)
LOC110520358 LOC106586406 coding upstream 1965 62855879 ~ 62858995 (-)
LOC110504409 sh3rf3 coding upstream 15834 62869748 ~ 62943518 (-)
LOC110520360 LOC106586512 coding upstream 157220 63011134 ~ 63025281 (-)
LOC110520361 LOC106586409 coding upstream 174964 63028878 ~ 63056733 (-)
chmp2ba chmp2b coding upstream 246160 63100074 ~ 63115360 (-)
G284162 NA non-coding downstream 5416 62834494 ~ 62836044 (-)
G284040 NA non-coding downstream 98530 62742521 ~ 62742930 (-)
G284023 NA non-coding downstream 115415 62725021 ~ 62726045 (-)
G284012 LOC106586506 non-coding downstream 137358 62703779 ~ 62704102 (-)
G283998 NA non-coding downstream 171060 62670174 ~ 62670400 (-)
G284213 NA non-coding upstream 669 62854583 ~ 62854787 (-)
G284217 NA non-coding upstream 8839 62862753 ~ 62864090 (-)
G284218 NA non-coding upstream 12423 62866337 ~ 62868740 (-)
G284220 NA non-coding upstream 14908 62868822 ~ 62869461 (-)
G284244 NA non-coding upstream 48402 62902316 ~ 62903140 (-)
G284018 NA other downstream 126283 62714575 ~ 62715177 (-)
G277749 LOC106586429 other downstream 5252277 57584386 ~ 57589183 (-)
G277673 LOC106586423 other downstream 5437885 57402984 ~ 57403575 (-)
si:dkey-91i10.3 LOC106586420 other downstream 5543698 57270782 ~ 57297762 (-)
G275250 NA other downstream 7429973 55410143 ~ 55411487 (-)
G286522 NA other upstream 2115635 64969549 ~ 64970755 (-)
G286580 marco other upstream 2160345 65014259 ~ 65029736 (-)
G286638 NA other upstream 2200786 65054700 ~ 65075985 (-)
G286953 LOC107579696 other upstream 2381266 65235180 ~ 65235908 (-)
G286985 LOC106586592 other upstream 2444293 65298207 ~ 65300417 (-)

Expression


Co-expression Network