LOC110520358 (LOC106586406)


Basic Information

Item Value
gene id LOC110520358
gene name LOC106586406
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62855879 ~ 62858995 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597620.2
TACTGCGACCCCTGTCTGTCACACACGGTTTGTCTCTTGGAGGAGAGAATCGGAGAGTAGGGATTAGGATGATGGTGATAATGAATATGCTGTTATCGGCGTACTTCAACCTGTTAGTGATGCACGGATGAAACGATGCAACGTGGGAAAGAAACATTTTAAATTGTTATTATTGTGTTGGCTATTTCCACAATTTATTCCAAATGGCGACCGAATGCACAGAACAAGCCGTACTGGAGTTCCTAacggagagaggagggttggtcAGACATATGGACCTGATTGATCATTTTGAATCCGTGTGGAAAAGTGATGCGTCAAAGAAAACACTGTTCAATGAAAGGTTGAACCGTCACGTTGACAGCGTTGCTTTCATAAAACTGGAGGATGGAATGAAATTCGTGTGTTTGAAGGAAAACAGCACAAGGTCCGTGAAGCACACAGACCCTGGCAACGATGGAGAGAGTAACGGCAACGGGGTGTGTGGTAGGGACCGCCCACTATCTGAATCTGGAGAACGGGATGGGAGCAGCAATGTCAGCCGAGATGGAAACGGACATTCTAGTGATAAATGTGATTCACCTGAAAAAGACTCAAATGCACCCGATGCCCTATCTTGGCTTGATAATGACATGAAATCAAACGGTAATCTTCATCATCCATGCTGCCTAGAGGAAGGTAAAGTTAGTGATGTTACCTCAGTTGGAGTCACAGAGGTGAAGCTTAGAGAAGTTAGTGATGATACCTTCTCAGGTGGAGAGGTGAAGctaagagacaggaggaggagagagtcagcTCCAGCACTGGGGACAGACTCAAGTGTTTTGGCTGGACAGGTGCAGGTGAGGGGAAGTAGGAGGACCTCCCGGGGCTCCCAGAAGGCTCTGCTGACCAGCGCTCTGTCAGAGGACGGTGGGTGGGAGGGACTGGATGGAGACTGGAACACCCCCAAGAGCAGCCGCAGGAACTTCATAGAGCTGATGATGAGCAGTTCCCCACAGGTACGTCGGTCTCTGATCAACCGCGGCTCTCGTCTCAGAGACTCTGTCAGGAGCGACGGTGACTCCACCTCTCTCCTGTCGTCTGCAGACGGGGACTGTGTCTCAGTGGCCTTGGACCCCCTGGAGCACGAGTGGATGCTGTGTGCCTCGGACGGCCAGTGGGACAGTCTGTATCCGCTGCTAATCCTGGACCCCAGCCTGCTGACCAAGAGGGACTTTGTGACGGGCTTCTCCTGCCTCCACTGGGCTGCCAAGCAGGGCAACGAGGAGCTGTTGACACAGCTACTGGAGCATGCCAAGCAGAACAATGTCCCTGTGGATGTTAATGTACGCTCTAGTGCTGGGTACACTCCCCTTCACCTGGCTGctatgcatggacacacacagGTGGTGCATGTGCTGGTAGACCAGTGGTCTGTAGACCCAGAGGCCAGAGACTACAGTGGGAGGAGAGCTGGCCAGTACCTTCCCCCTGGAGCCCCCTCTACTGCAGCCCTGGAGCCAGGGGGTGGGACCAGccctgtaggaggaggagaatcAGACACGGAGAACGCAGACAGTGGGGCACAAGGGCGGTGGAGATTACCCAGAGTTCTCCAGTCCAACCTGAACCCACTGAGGCTGCTGAACGgatcaggggaggggggggaggtgaggggagggggggcaggaaGGAGCAAGGCTGTTCAGAGGAAGTCATCTCTGAGTCGGATCAACGCACGGCTCCACCGGGGACGCCATAAGACCCAGATCATCCACAGCACCTCCTTCAGAGGGAcgggggagggagtggaggagggagaaaggggggagaccAGCCCAACCAGCCCCCTCAAAGGCAGACCAATTTCCAATCTGTTTGGATAAGTCACTGCAGTGTTAGAATCGCACATGCAGTAACAGATCAAAGGCGGCCCTAATAACCAGCCTACTGATTATGATACCATTATGACATGGGATCTAGTACTAAGGGCCCAGTTTCCACCCAACACATATTACatttagtcctggactaaaaaacaTGAGCATGCTTTTCCATCCAGGTGTAGGCTTAACCTGGGTCTGAGAACTGTAGGCCTACTTTCAACTTTAGATTTGGCACCGTTTACTAGTCACTGGGAAATTAATCCCAGAACTAAAATATTGCGTAATTTGGTCAGATGCTCCTACCGTTTATGTTTCTGtaatctgtccacgagagattactGAGAAATAGATCTGGGATCATTTTGCTGTACGAAAAATGTTCACTCAATAGATCTGAATCCTGTGGGGATTTAAGGTGCTGCTTACAGTAATTACCTCTACATAATTCTTTAATATATTTAACATAATTATTTAACTTCTACAATTATTATAAAGACAAGTCAAAATAATCAATGAACACCTTCAACACGAATCTCGATGTAACTGCACATGTCACTTTGGAGGTTTAACCAGAATGAAATAGGTGAGTCTATAACCTATGGATTGTGTAGATGTTTTACCAGCAGTAAAGTTAGAAAAACTCTGCACATTTTAAGTTACATTCGCTAGACTGTGAATGGTCTATTCCTGAAATGGTCAGGAATAGAAAAAGAAAGGGTCAGAACTCCTAGTTGAGATGGAGGAAAAAGGAGTCCCCATGTAAAAAAGAAAGGGTCAGAACTCCTAGTTGAGATGGGGGAAAAAGGAGTCCCCATGTAAAAAAGAAAGGGTCAGAACTCCTAGTTGAGATGGGGGAAAAAGGAGTCCCCATGTAAAAAAGAAAGGGTCAGAACTCCTAGTTGAGATGGGGGAAAAAGGAGTCCCCATGTAAAAAAGAAAGGGTCAGAACTCCTAGTTGAGATGGGGGAAAAAGGAGTCCCCATGTAAAAAAGAAAG

Function

NR:

description
ankyrin repeat domain-containing protein SOWAHC-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597620.2 True 2864 mRNA 0.49 3 62855879 62858995

Neighbor

gene id symbol gene type direction distance location
LOC110520356 LOC106586509 coding downstream 1965 62841460 ~ 62853914 (-)
LOC110520357 asmt coding downstream 14782 62832908 ~ 62841097 (-)
LOC110520353 LOC106586507 coding downstream 75567 62748424 ~ 62780312 (-)
LOC110520350 LOC106586501 coding downstream 260180 62547867 ~ 62595699 (-)
trnal-caa-2 NA coding downstream 312550 62543221 ~ 62543329 (-)
LOC110504409 sh3rf3 coding upstream 10753 62869748 ~ 62943518 (-)
LOC110520360 LOC106586512 coding upstream 152139 63011134 ~ 63025281 (-)
LOC110520361 LOC106586409 coding upstream 169883 63028878 ~ 63056733 (-)
chmp2ba chmp2b coding upstream 241079 63100074 ~ 63115360 (-)
LOC118944692 NA coding upstream 305299 63164294 ~ 63167048 (-)
G284213 NA non-coding downstream 1092 62854583 ~ 62854787 (-)
G284162 NA non-coding downstream 19835 62834494 ~ 62836044 (-)
G284040 NA non-coding downstream 112949 62742521 ~ 62742930 (-)
G284023 NA non-coding downstream 129834 62725021 ~ 62726045 (-)
G284012 LOC106586506 non-coding downstream 151777 62703779 ~ 62704102 (-)
G284217 NA non-coding upstream 3758 62862753 ~ 62864090 (-)
G284218 NA non-coding upstream 7342 62866337 ~ 62868740 (-)
G284220 NA non-coding upstream 9827 62868822 ~ 62869461 (-)
G284244 NA non-coding upstream 43321 62902316 ~ 62903140 (-)
G284258 NA non-coding upstream 59511 62918506 ~ 62919245 (-)
G284018 NA other downstream 140702 62714575 ~ 62715177 (-)
G277749 LOC106586429 other downstream 5266696 57584386 ~ 57589183 (-)
G277673 LOC106586423 other downstream 5452304 57402984 ~ 57403575 (-)
si:dkey-91i10.3 LOC106586420 other downstream 5558117 57270782 ~ 57297762 (-)
G275250 NA other downstream 7444392 55410143 ~ 55411487 (-)
G286522 NA other upstream 2110554 64969549 ~ 64970755 (-)
G286580 marco other upstream 2155264 65014259 ~ 65029736 (-)
G286638 NA other upstream 2195705 65054700 ~ 65075985 (-)
G286953 LOC107579696 other upstream 2376185 65235180 ~ 65235908 (-)
G286985 LOC106586592 other upstream 2439212 65298207 ~ 65300417 (-)

Expression


Co-expression Network