LOC110504409 (sh3rf3)


Basic Information

Item Value
gene id LOC110504409
gene name sh3rf3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62869748 ~ 62943518 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974886.1
AGCTGCGCGAGGGAgagcaagcagagagagcgagaagagagagaggggttgccTGGTTGCCTTAACGGGCTCAGTTCGGGGAAATAGCACAACAGATTGCGCTTTTAAACAGCCTACGCCGATATGTATTCTTCAGTTTCTGGTGCATTAAACGCGAAATCAGAAACCAACACCCACTCGGTTAACGTCAATAATAATCGGTAAGGAATATTCGATGAGTGAGATGGACGAGTCGTCTCTGTTGGATTTGCTGGAGTGTTCAGTGTGTTTGGAAAGGCTGGACACTACAGCTAAAGTCCTGCCTTGCCAACACACCTTCTGTCGCCGCTGCTTGGAGAACATAGTCAGCTCCAGAAACGAACTGAGATGTCCCGAATGTCGCATCCTAGTCGGCTGTGAGGTGGACGACCTCCCCGCGAATATCTTGCTGGTCCGCCTGCTGGACGGGATCAAACAGCGGCCACGGAATGCAGGCAGTACCAGACAGTCCCAGGTGGGGGGCGGAGAGTCATTGGGTTGTGCAGCCGGGATCAGCGCCTCTCCCCCGGGCAGTGGGATCAGGGACCTGCCGGTGGCCACAAGGAGCTCCCCCGTCAAGagtGTCCCAGCCCTGCCCTGTGGGAAGGCTCTCTACTCCTACGAGGGGAAGGAACCCGGAGACCTGCAGTTCGCTAAAGGTGACATTATCATCCTGCGACGTAAAGTCGACGACAACTGGTACCACGGGGAGCTGAACGGTTGTCACGGTTTCCTTCCAGCTAGTTACATCGTGTTGTTACGGCCGCTGAGCCAAACTCCACCAACAGGAAAGGCCCTGTATGACTTTGAAGTGAAAGACAAAGACCAGGACAAAGACTGCCTGGCATTCtcaaagGATGAGGTTTTGACAGTGATCAGACGAGTGGATGACAACTGGGCAGAGGGCATGCTGGGAGATAAGATCGGGATCTTCCCCATCCTCTATGTAGAGCTAAATGAAACAGCCAAACAGTTGATGGAGATTGACAAGCCGACACCCAATCCTGTCCCTGGCCCCAGCTCTGACCCGCCCCCCGGCCTCACATTGGGTCCCTGCTCCTCTGGCCCCTCCCCTAACCCATCCTCTCCAGGAAGCAGCAATGGCGCCCTCCAGAggcgaggggaggagaggagaggaggagaggagaggaaaggaggagaggggaagaagaaTGCTAAGAAGCGCCACTCGTTCACAGCTCTGAGTGTGACCCAGCGGACAGCACAGCTCAACAACAGACACAGTATGGAGATCTCCCACCCTGTCCTCATCAGCTCCTCTGACCCCAGGGCTGCTGCACGAATACAGGACTCTCCCCCCGGTCCCGCTCCCTCCTCAGTAGGGGTTCTGGTTCCTCCCAGAGTGGCTTCAGTCACCTCAGAACTGCTGGCTCAAGCCAAGGTCCAACTACCACTCAACATCTACCTGGCCCTGTATGCGTATAAGCCCCAGAAGGCAGATGAGTTGGAgctgaggaaaggagagatgtACCGTGTCACAGAGAAGTGTCAGGACGGCTGGTTTAAAGGGACCTCTCTACGCACCGCTGCTTCAGGAGTCTTCCCTGGAAACTACGTCACACCCGTgtccagagctCCGTTTGCGGTGGGTGGTTCGCGGAACTCCTGTCTCTCAGGGCAGGTGGGAGGGGCGGGACAGGGGAGTAAGgcagcctccccctcctcctctcgtccctcacctcccccttcctccccacaGTCTGCCGCTGCTCAGCTGAAGAACTGCCTTCGCTCTGGACAACAAACAGTTAACCAGGCCCGCTCTGCCATGCAACTGGTCCACAGCCCGCCCGCCAGTAGCCCAGAGCGTCCCACAGCGGCCATCTCTCCTCTCCGACATCAGAACTCCTCCCCCTCGCGCTGCGCTGGCCAATCCGCTCGCCCAATGTCCATGGTGTCCCCCggcccttcccccctctcctcccctgcctcgcgccccctctcctgcctctcctcccctctccttccccgttcctctcccctctcctgcctTACCCCTCCCAACGCCAGTGCTGCCCTGCTCAATGGAGAATCAACCAATCCCTTCCAGCCACCCTCACCTGGCCCCTCCCACAGCAACGCCCAGGGGGCAGTCCCCCCAAAACCAGAGAAGaaagagaagaaaggaggTCTGCTAAAGCTTCTCTCAGGAGCCGCGGCCAAGAAGAAGTCATCTCGCTCTCCCCCGTCCTCCCCCCCGACCCTTCCCCTGTCGGGTGCCGTCCTCCCACATCACACCCGCTCTGGTTCCTGTCCTATGGAAGCTCAGGGGCGTGCCGGGTCTTGTCCAATTGAGAGTGAGATGGTGGGGGCCATGGGGTTAGAGCCTCTGCACAGGAAGTCAGGATCCCTCGACCTCAACTTCCCCCGGTCGCCCCCGACGCCCCGCACCGGAAACGCACTGCTGGCCCTCCGGCCTGAACCCAAACCCCTGTCCAGAGAGagGTATCGTGTGGTTGTGCCCTACCCCCCTCAGAGCGAGGCAGAGATcgagctgagagagggagatgtggtgTTTGTTCATAAGAAGAGAGAAGATGGCTGGTACAAAGGCACTCTGCAGAGGACTGGACGCACTGGGCTCTTCCCCGGCAGCTTTGTAGAAATCTTCTGAACAGgatcgctacacacacacacacacacacacacacacacacacacacacacacacacacacacagctgaagtcggaagtatacatacacttaggttggagtcat

Function

symbol description
sh3rf3 Enables ubiquitin protein ligase activity. Involved in positive regulation of JNK cascade and protein autoubiquitination.

NR:

description
SH3 domain-containing RING finger protein 3

GO: NA

KEGG:

id description
K12171 SH3RF, POSH; E3 ubiquitin-protein ligase SH3RF

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974886.1 True 2759 mRNA 0.58 9 62869748 62943518

Neighbor

gene id symbol gene type direction distance location
LOC110520358 LOC106586406 coding downstream 10753 62855879 ~ 62858995 (-)
LOC110520356 LOC106586509 coding downstream 15834 62841460 ~ 62853914 (-)
LOC110520357 asmt coding downstream 28651 62832908 ~ 62841097 (-)
LOC110520353 LOC106586507 coding downstream 89436 62748424 ~ 62780312 (-)
LOC110520350 LOC106586501 coding downstream 274049 62547867 ~ 62595699 (-)
LOC110520360 LOC106586512 coding upstream 67616 63011134 ~ 63025281 (-)
LOC110520361 LOC106586409 coding upstream 85360 63028878 ~ 63056733 (-)
chmp2ba chmp2b coding upstream 156556 63100074 ~ 63115360 (-)
LOC118944692 NA coding upstream 220776 63164294 ~ 63167048 (-)
epsti1 epsti1 coding upstream 323600 63267118 ~ 63282972 (-)
G284220 NA non-coding downstream 287 62868822 ~ 62869461 (-)
G284218 NA non-coding downstream 1008 62866337 ~ 62868740 (-)
G284217 NA non-coding downstream 5658 62862753 ~ 62864090 (-)
G284213 NA non-coding downstream 14961 62854583 ~ 62854787 (-)
G284162 NA non-coding downstream 33704 62834494 ~ 62836044 (-)
G284448 LOC105357840 non-coding upstream 127108 63070626 ~ 63071625 (-)
G284452 NA non-coding upstream 137836 63081354 ~ 63081556 (-)
G284453 NA non-coding upstream 139511 63083029 ~ 63083228 (-)
G284457 NA non-coding upstream 144433 63087951 ~ 63089637 (-)
G284458 NA non-coding upstream 146285 63089803 ~ 63090207 (-)
G284018 NA other downstream 154571 62714575 ~ 62715177 (-)
G277749 LOC106586429 other downstream 5280565 57584386 ~ 57589183 (-)
G277673 LOC106586423 other downstream 5466173 57402984 ~ 57403575 (-)
si:dkey-91i10.3 LOC106586420 other downstream 5571986 57270782 ~ 57297762 (-)
G275250 NA other downstream 7458261 55410143 ~ 55411487 (-)
G286522 NA other upstream 2026031 64969549 ~ 64970755 (-)
G286580 marco other upstream 2070741 65014259 ~ 65029736 (-)
G286638 NA other upstream 2111182 65054700 ~ 65075985 (-)
G286953 LOC107579696 other upstream 2291662 65235180 ~ 65235908 (-)
G286985 LOC106586592 other upstream 2354689 65298207 ~ 65300417 (-)

Expression


Co-expression Network