LOC110520360 (LOC106586512)


Basic Information

Item Value
gene id LOC110520360
gene name LOC106586512
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63011134 ~ 63025281 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597622.2
CGCCCTCAGGATGACAGCAGACTTGTAGGTTTTTCATTTCCGGTTTAGGAAAAATGCACATAATTCAAACTGACAACAAGTTGACTGCTTTTGGCGTTTGTTGAAAAACAATACATCTGTGTGAAATCTCAAGATGAACAAGGAATCGTCAGGGAGCGAGTTGGACGTTACGGTTGAGAGGCTGAAAATGAAATATCTGGAAAGGAAACGGGTCTCTACAGAGCAGAAAGCACCTGCGCTGAGTGGAAGACACTACCATGGTGGGCAGCAGAGAGTTGTGAAGTCCCCCAGGTCTAGACGCAGCACCACCAGGGAGATGAGCGGTTACAATAGAGCCTTACAGGAGCTGTTCCAGGCTGTCACCAACCCTCCAGACAGGTTGTACAGTGACTGTAGTCGGGATGACAGTGAGGAGGACCTGAGTGAGAACTATATTTTCAGCCCTCTCCTGGACACACAGACCCACTACACAGAGACAGATGTGACCCTGCCCTCCAGCCTAGCCCGTACCTTGGGCTCCCGAGAGACTGAGTCCACCGTAGGCCTGGCCAGagaagaggaggtgaggggggagaaagaggagagaggggtgaggcagAAGCagtcctcccctgtcctctccccctcctgCCCCTCAGTGATGGGACAGGTTTACCAGGAGATGCTGCACATCTACCAACAACTACAGGCAGAACGTTTGAGCCAGCTGCAGTGGTCGGCCCAGCtccaggacagagagaacagactgctACAGCAAGAGGAGAGCCGCAGTGAGGAGGTGAGTCAGCTACAGGAGCAGCTGagtgagagaaccagagagaacaAGAGGTTAAAGTCCAGCTTCAACTCCATCAAGGAACTCAATGACAACATGAAGAAACAGCTGAATGAGCTGAGTGAGCAGAACAAGCGTCTGGAGAACCAGTTCAGGAAGGTCCAGGCTCGGCTAGAGAACCTTCAGaggaaGTATGAATACTCCATGgcacagaaggggagagagaacgtTTGTCAGAAGGCCATTGAGTCCAAACCTGAGAAAAAAGCCACCTCCAAGCCAGCCAAGGGTAGTGTAAGTCCCACCCCTCTCAGGCTGCTGGCTTTGCTATTGGATTGGATTCTAGACAGACAGACGTTTCCTCCAGTAGCAGGAGACAGCAGAACAGCCCAGGGTCAGCAGCACACGTCTCCAGTGGTCTCTCTCCTCGACAGGTGCTCGAAGGTTTTGCCTCTGTTGGTTGAGCAGCTGCATCAGTCCTCTGCATCACCAGACCCCTCTGGTACCCTGTCCCTGATCAAGTTTATATACTGGAGCCTGAGAGAGATAGACAACAGCATACAGCCGGTGGCTCTGTCGTCCACTTTACGGCGTCTGGGGGAGGAGATGTCCAGGGTTCCGACCCAGCAGCAGGACCCCAGTGGCCCTCTGAAGACCAGGggccctcctctacctccctcgtTGTACAGGAGCCTCTGTCCCCACACACgtctcctgtcctccctcatcATCCTCAGGACCGTCACCCAGGCTGACATCCTAGCCCAGGTGTTGGACTCCCTCCACAGTGACCTGGTGTGTGTGGATGTCCGGGGGCTGTTTCTTCAGTACGGGGGAGTGTCTGTCCTCCTAGCCCTGCTCCGAGGAGGGAAGGGGGGGCTGCAGACCCCCCTAGACATCCTACTGCAGCTCAGCACAGAGTCTCGGTATCTGTCTGAGTTCCTGTCTGCTTGCAGCACTGAAGAGTTCTTCCGTACTGCAGCTCTCCTTGTGAAGAACCCCAGACTAGAACTTCCTCTTCTGGAGAAACTCTCCATCATCCTACAGAAACTCTCCAAGATCAGGAAGAACAGGCGGCTGTTTGAGCTCTGCTCTCTTCATCTGCTGCTGCAGGAGATGCACAGAACAACTGACCCTACACTCACCTTCTTGTCATTGAACCTTAGCTCTATACTTCTCaatctgaaataacacacactcacacgtatAACCTTATTGTGGAGGTGACTTTTTATTTTTGTCAAGTTTTGTAATATGTTTTTATATGATCTTAACCTATATATTGTACCTTGTTTTGAACATGTTTACCATCTGCTATGAAATGAGCATCATGTTGGGAGAGGCTATGATTGTCTCATGCATTCTGAGGTAAAGATGATTTCACTAGGAAGCTTTTAAAAGCAATAAACTAAGAAATGATGGGAAACAGTGTTCGATTTCTCTGTCTTATAGTTACGAAATACATTAGTTTATGTCACATATgttttctataaacctgtttgtTTGTTATGGACCTAAGCTGGAGGTTTTTAACAAGTCCAGAATGGTTCTGTTTGGTGACGGTGAGGAGAATATCACACTGACAGACATTTCTGATCTCTCCTCTGTAAAGAGCCCTGTTAGTCAGTATGTTGAATAAAACATCTAATTGAAACTTT

Function

NR:

description
coiled-coil domain-containing protein 138

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597622.2 True 2433 mRNA 0.50 13 63011134 63025281

Neighbor

gene id symbol gene type direction distance location
LOC110504409 sh3rf3 coding downstream 67616 62869748 ~ 62943518 (-)
LOC110520358 LOC106586406 coding downstream 152139 62855879 ~ 62858995 (-)
LOC110520356 LOC106586509 coding downstream 157220 62841460 ~ 62853914 (-)
LOC110520357 asmt coding downstream 170037 62832908 ~ 62841097 (-)
LOC110520353 LOC106586507 coding downstream 230822 62748424 ~ 62780312 (-)
LOC110520361 LOC106586409 coding upstream 3597 63028878 ~ 63056733 (-)
chmp2ba chmp2b coding upstream 74793 63100074 ~ 63115360 (-)
LOC118944692 NA coding upstream 139013 63164294 ~ 63167048 (-)
epsti1 epsti1 coding upstream 241837 63267118 ~ 63282972 (-)
LOC110520368 LOC106582175 coding upstream 294567 63319848 ~ 63436412 (-)
G284267 NA non-coding downstream 74999 62933280 ~ 62936135 (-)
G284258 NA non-coding downstream 91889 62918506 ~ 62919245 (-)
G284244 NA non-coding downstream 107994 62902316 ~ 62903140 (-)
G284220 NA non-coding downstream 141673 62868822 ~ 62869461 (-)
G284218 NA non-coding downstream 142394 62866337 ~ 62868740 (-)
G284448 LOC105357840 non-coding upstream 45345 63070626 ~ 63071625 (-)
G284452 NA non-coding upstream 56073 63081354 ~ 63081556 (-)
G284453 NA non-coding upstream 57748 63083029 ~ 63083228 (-)
G284457 NA non-coding upstream 62670 63087951 ~ 63089637 (-)
G284458 NA non-coding upstream 64522 63089803 ~ 63090207 (-)
G284018 NA other downstream 295957 62714575 ~ 62715177 (-)
G277749 LOC106586429 other downstream 5421951 57584386 ~ 57589183 (-)
G277673 LOC106586423 other downstream 5607559 57402984 ~ 57403575 (-)
si:dkey-91i10.3 LOC106586420 other downstream 5713372 57270782 ~ 57297762 (-)
G275250 NA other downstream 7599647 55410143 ~ 55411487 (-)
G286522 NA other upstream 1944268 64969549 ~ 64970755 (-)
G286580 marco other upstream 1988978 65014259 ~ 65029736 (-)
G286638 NA other upstream 2029419 65054700 ~ 65075985 (-)
G286953 LOC107579696 other upstream 2209899 65235180 ~ 65235908 (-)
G286985 LOC106586592 other upstream 2272926 65298207 ~ 65300417 (-)

Expression


Co-expression Network