LOC110520361 (LOC106586409)



Basic Information


Item Value
gene id LOC110520361
gene name LOC106586409
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63028878 ~ 63056733 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021597623.2
AAGATTTGCCTCGCGTTCCCGACTGTAGGCTATTCCTTGTTATTTGgctacaatccacagctaggctatttaaaaaaaaaaaagctatagATCCTCTGTGGCTTAATTATAGGCCTTCCCTTGGTgtagtaggctattctgaattATTTCATTTGATTCTGAACAGACAGTGGTAATTATATCACTTTGGCATATACATTCATTAGGGGTGCTGCAGTTCCTTCAGATCCCTTCGCGCGATTCTATAAGGAAATACATATAGTGCAACGCTGgagagttgcaggctcatgtctatcagagcagagagggagatatCATATGAAGTTAATCTAATTCTAGTTATGTGAGAGATACTGGCACGCTTCTCACACAGCCACCGCCACCCGTTGGTCTCAAACGTAGGTTACAATGTTGAGCAAATCATAAATCCGGCCCAGCCCACCCCGAATCAACTCTTAGAATATTAGGCCCGGGCTAAAAGCAACTTTTTCATATTACGTTTTTTTTGTGGGGGCAGGAGAATTAACGAATTGGCAACTCGAATGAACTTTGATCACTTTTCTTCTAATTTGTACATAGCAAAAAGTGTGAGAATAAAAATTAATGCCTATATGTCAATTCCCAGGCTATTGAGCGCTGCTGGTGCACGATATTAAATGTTGGAGGACCACCCGTGCGCGTGCTGGCTCCCAATTGCGTATTCTTCGATGGCGTGAGGGCGTCAGTAACCAAAGAGGGTCGCGGTGTAGAGTAGATCTATATGATATATATCACCTCCTCCGCCCCGCTCAAACACCGACCAGGGAACGAAACACCAGTACATGAGCAGGAGGACACCATTCAGAAAACCAACCAACAACTGACAGCTTTATCGCCGTTGAGAACACAGGTGTCTGTGAAATATTGGTTGAGTCCAGAGATACCAGAAAGAAGCTACTGACACAGGTTACTGCTGGAGAGGGCACACcaataaacacacatcacaaagGTACACACAGCTTATACAGCTATGGAGGATTACGCTTCATTAATCATCTGCCTGGTCAATCTGAAGTCCTACATGGTTTGAGTgaTGGACTTGTCTAACTGTACAGAGGGGGTCTTCTCCCTGggtgggggtgaggagggggatggGGGTTCTATAACCCCACCAAGTAAAATCATCCTCACCCTCACCCTGTCCCTGCTCGCTGTCATGACAATGGTTATCAACTCCCTGGTGATCACAGCCATCATCGTAACCAGAAAGTTACATCATCCGGCCAACTACCTGATCTGCTCTCTGGCGGTGACGGACCTGCTGGTGGCCATCTTGGTCATGCCCTTCAGCATCCTCTACATACAGAGGGAAAGCTGGGTGATGGGTGAGGCTGTCTGTAATGTTTGGCTGAGTGTTGACATCACCTGCTGCACTTGTTCCATCCTCCACCTGGCAGCCATCGCTCTGGACCGCTACTGGGCCATCACTGACGCCGTGGAGTACTCACGCAAACGCACCGGCCTCCGAGCTGGCATCACTGTCGCCGTCGTCTGGTTCCTGTCCGTCCTCATATCCCTTCCCCCTCTGCTGTGGAGGAACCATGGTGGGGGGCCAGAGGAGGACCAGTGTCTGATAACGCACCACCACATCGCCTTTACCCTCTACTCCACCCTGGGGGCCTTCTATATTCCCCtgctcctcatcctcatcctctacTATAAGATCTACAGAGCAGCTCAGACTCTGTACCTCCGCAGGGGGGCCAGCAGAGCCAGCCAGCACTCCTCCATGGTCAACGGAACCACCCTCCCCTCCTGCCCCACTGATGGAGACCCCCAGAGCCCAGACACCCTGAACCCCCCGGAAAAGTCTTACTCAGACCCCTCCACGGAGGGAGACCGCGTGCGCATCGCCGTAAAAAGTCCCCAGAGCGAGTCGAGGCGGGAGCGTGAATGTGGGTTGAGACGGCAGCGTATCTCAGGGACCAGGGAGCGACGCGCTGCATCTACGTTAGGACTGATACTGGGGGCCTTCGTGGTCTGCTGGATGCCTTTCTTCCTGAAGGAGGTGATCGTCAACACGTGTGGCTCCTGCAACACCTCCATAGAGCTGGCTGACTTCCTCACCTGGCTGGGGTACCTCAACTCCCTTATCAACCCTCTCATCTACACTATCTTCAACGAAGACTTTAAGAAGGCCTTCCAGAGACTGGTCAGGTGTAGGCTTCGCCTCTGACACGGGCAGAGAGGacacacatttgttttttatttaacctttatttaggcaGGGTGGAGTCCAATTTAGACAAaggtacctcacacatacaagtATCTGTAGGGTCGCTAAGTCGAACAGTGAatatcaaacacagattcaaccacaaagaccagtgaggttttccaatgtctcgcaaagaagggcacctatggGTAGAAAacgacattgaatatccatttgagcatagtgaagttattcattacaaaTACTAcaaatacaggcgtccttcctaactcagttgccggagaggaagaaaaccacgATTTCACCACGAGGTCAAtgctgactttaaaacagttacagagtttaaaggTACAATATTCAGAAAtctctccgccatttcctggttgctaaaattctaatactccgtctaatttcagtttgacaaaacaagcagtttatagtgtagagaatcattgcacCATCTAATCCGCTGTGAAAAATCTTTACAAtaaccaaaatattgtattttcaactgtttgaagctggtgtacataactgaaagtaaaagacgcaaaagcCATACTTAAGAAcgagaagcatagaaatagaacacagaacagatctaccgcttcttacgtttgctttcaatgagaatgaccgtctaactcacatttctatgtgcattTTGTCGGTCGCCCAAAAATGTACATATTGAaactttaatggctgtgataggagaaaactgaggatggatcaacattgtagttactccacaatactaaactaaTTTACAGGGtgaaaaaaaggaagcctgtacagaatacatatatttcaaaacatgcatcctgtttgcaacaagtcactaaagtaaaactgcaaaaaatgtggaaaagaaaTTAACTTTACAGTGCcctcaaagtattcataccctttgacttatttcacatgttgttgtgttgtagcctgaattcaaaatggattacattttactTAAATGTTTTCTCACACATCTACACAAAAAAAACCCATACTGACAAACTAAGtatcaaccccctgagtcaatacatgttagaatcaactttggcagcaattacagtgactctttctgggtaagtctctaagagctttgcacacctggattgtacaatatttgcacgttCTT

Function


NR:

description
5-hydroxytryptamine receptor 1F-like

GO: NA

KEGG:

id description
K04153 HTR1; 5-hydroxytryptamine receptor 1

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021597623.2 True 3362 mRNA 0.46 4 63028878 63056733

Neighbor


gene id symbol gene type direction distance location
LOC110520360 LOC106586512 coding downstream 3597 63011134 ~ 63025281 (-)
LOC110504409 sh3rf3 coding downstream 85360 62869748 ~ 62943518 (-)
LOC110520358 LOC106586406 coding downstream 169883 62855879 ~ 62858995 (-)
LOC110520356 LOC106586509 coding downstream 174964 62841460 ~ 62853914 (-)
LOC110520357 asmt coding downstream 187781 62832908 ~ 62841097 (-)
chmp2ba chmp2b coding upstream 43341 63100074 ~ 63115360 (-)
LOC118944692 NA coding upstream 107561 63164294 ~ 63167048 (-)
epsti1 epsti1 coding upstream 210385 63267118 ~ 63282972 (-)
LOC110520368 LOC106582175 coding upstream 263115 63319848 ~ 63436412 (-)
LOC110520372 tsc22d1 coding upstream 471110 63527843 ~ 63601105 (-)
G284267 NA non-coding downstream 92743 62933280 ~ 62936135 (-)
G284258 NA non-coding downstream 109633 62918506 ~ 62919245 (-)
G284244 NA non-coding downstream 125738 62902316 ~ 62903140 (-)
G284220 NA non-coding downstream 159417 62868822 ~ 62869461 (-)
G284218 NA non-coding downstream 160138 62866337 ~ 62868740 (-)
G284448 LOC105357840 non-coding upstream 13893 63070626 ~ 63071625 (-)
G284452 NA non-coding upstream 24621 63081354 ~ 63081556 (-)
G284453 NA non-coding upstream 26296 63083029 ~ 63083228 (-)
G284457 NA non-coding upstream 31218 63087951 ~ 63089637 (-)
G284458 NA non-coding upstream 33070 63089803 ~ 63090207 (-)
G284018 NA other downstream 313701 62714575 ~ 62715177 (-)
G277749 LOC106586429 other downstream 5439695 57584386 ~ 57589183 (-)
G277673 LOC106586423 other downstream 5625303 57402984 ~ 57403575 (-)
si:dkey-91i10.3 LOC106586420 other downstream 5731116 57270782 ~ 57297762 (-)
G275250 NA other downstream 7617391 55410143 ~ 55411487 (-)
G286522 NA other upstream 1912816 64969549 ~ 64970755 (-)
G286580 marco other upstream 1957526 65014259 ~ 65029736 (-)
G286638 NA other upstream 1997967 65054700 ~ 65075985 (-)
G286953 LOC107579696 other upstream 2178447 65235180 ~ 65235908 (-)
G286985 LOC106586592 other upstream 2241474 65298207 ~ 65300417 (-)

Expression



Co-expression Network