Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110520364 |
| gene name | LOC106586514 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048567.1 |
| NCBI id | CM023221.2 |
| chromosome length | 85311031 |
| location | 63124380 ~ 63129015 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| transcription cofactor vestigial-like protein 3 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021597625.2 | False | 2275 | mRNA | 0.51 | 4 | 63124380 | 63129015 |
| TU322475 | False | 288 | lncRNA | 0.52 | 2 | 63124808 | 63125815 |
| TU322474 | True | 1354 | TUCP | 0.52 | 4 | 63125890 | 63128958 |
63,122,000
63,123,000
63,124,000
63,125,000
63,126,000
63,127,000
63,128,000
63,129,000
63,130,000
63,131,000
63,132,000
63,133,000
63,134,000
63,135,000
NC_048567.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110520363 | NA | coding | upstream | 4973 | 63113667 ~ 63119407 (+) |
| LOC110520359 | LOC106586511 | coding | upstream | 116461 | 62947318 ~ 63007919 (+) |
| LOC118964307 | NA | coding | upstream | 263882 | 62858213 ~ 62860498 (+) |
| LOC110520355 | LOC105016359 | coding | upstream | 311299 | 62770924 ~ 62815230 (+) |
| LOC110504398 | LOC106586506 | coding | upstream | 411640 | 62705451 ~ 62712740 (+) |
| LOC110520366 | akap11 | coding | downstream | 44221 | 63173236 ~ 63204595 (+) |
| LOC110520367 | tnfsf11 | coding | downstream | 96238 | 63225253 ~ 63234657 (+) |
| lacc1 | lacc1 | coding | downstream | 320345 | 63414756 ~ 63457571 (+) |
| serp2 | NA | coding | downstream | 390789 | 63519786 ~ 63525770 (+) |
| gtf2f2b | LOC105016382 | coding | downstream | 496825 | 63625840 ~ 63682242 (+) |
| G284366 | NA | non-coding | upstream | 27162 | 63096986 ~ 63097218 (+) |
| G284355 | NA | non-coding | upstream | 48216 | 63075748 ~ 63076164 (+) |
| G284346 | NA | non-coding | upstream | 56910 | 63067225 ~ 63067470 (+) |
| G284345 | NA | non-coding | upstream | 57226 | 63066949 ~ 63067154 (+) |
| G284291 | NA | non-coding | upstream | 103667 | 62971484 ~ 63020713 (+) |
| G284471 | NA | non-coding | downstream | 1162 | 63130177 ~ 63130380 (+) |
| G284473 | NA | non-coding | downstream | 3258 | 63132273 ~ 63132581 (+) |
| G284535 | NA | non-coding | downstream | 128348 | 63257363 ~ 63257713 (+) |
| G284537 | NA | non-coding | downstream | 138104 | 63267119 ~ 63312394 (+) |
| G284560 | NA | non-coding | downstream | 183783 | 63312798 ~ 63313826 (+) |
| G284313 | NA | other | upstream | 101789 | 63016326 ~ 63022591 (+) |
| LOC110520346 | htr2a | other | upstream | 715523 | 62367489 ~ 62408857 (+) |
| LOC110520339 | lrrc63 | other | upstream | 927429 | 62193287 ~ 62200069 (+) |
| G282707 | il-1rii | other | upstream | 1162905 | 61957388 ~ 61964066 (+) |
| G284599 | NA | other | downstream | 261916 | 63390931 ~ 63391284 (+) |
| G284986 | LOC106586530 | other | downstream | 577553 | 63706568 ~ 63722064 (+) |
| G285001 | NA | other | downstream | 613991 | 63743006 ~ 63745493 (+) |
| G285203 | NA | other | downstream | 942417 | 64071432 ~ 64083982 (+) |
| LOC110520364 | LOC106586514 | other | downstream | 75 | 63124380 ~ 63129015 (+) |
