lacc1 (lacc1)


Basic Information

Item Value
gene id lacc1
gene name lacc1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63414756 ~ 63457571 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597635.2
TGCTATTCAAGGAGGAAGTTCAAACTCCCTGGAGTTTCTGAAAGCGGCGTGTTGACGCATGAAAATGTGTTCCTCTTTGAGTAAAAAGGCCCATCGCCTCTTTGAAATGCATCATTGATAACACACTTGTAGAGAAGCTTTTAACTATTAGTTAAGTTATTTCCGTTTATTGGATATCATTATTGCATTTACTTGACAACATGTCAGAAGTCTTCATTATAGATCTAATTCACTGTCGGTGTCCACAGCACAGCTCGTGCGTGGAGAGGCAAGTAAAAAGCGTCACAGGTAGGAGCGATGTCGGCTTTCAGATATATCTACTATTCGGACCACACGGTCAACGTTGTAATGCAAACGGCGAGAACAAGATGTATTTGCTGGAAACGTTTTTCAGTCAGAAGACAAACGTCCACGTATTGGACTACACCACTGTTACGGAGTCTTGGTACCGTTTCAAACTAGCCGTGGACCAACTGGACTTACGAACGGTTCGGGTCTTCACCTCAAAAAAAAGGAGACCGATGTTTGAAGCATACATTGAGCAACTTTTCACGGAGGTGTATACATTTGAGTACATCACATCCAATGACCTCCCGTGCCCTGGTCATGTGCAATGCGACTCACCTTTAGCTCCACCTGTCAGTGAGGTCAGAGAGGAGGTCAGAAGCTTTCTGCAGCAGTTACCAGCTAAAGGAGACGTCACCATACTGAGGTCCACTTTCATTTCAGactgTTTCTCCCATGGATTCACCACACGTACAGGAGGTATTTCCTccatctccaccctctcctctctcaacctGTTCAGTAGCTCCAGACGCAGAGACCCCATGACCCTCGTAGCCGAGAACATCCGCCGACTAGCCCAGAAGGCTGGGTTCTACCCCCGACGCCTGCACCTGGTCAAGGTGAACCACAGCAGTGACGTATGGGTGATGGGAAAGGAAGATGAGCCACACGACTATGATGGCATCGTAACCAATCAGAGAGGTGTTGTCATAGCTGCGCCAGGAGCTGATTGCATGCCCCTCCTCTTCACTGACCCCGTGGCCAGGGTCATCGGAGTAGCTCAcgctgGATGGAAAGGAACCCTGATGGGTGTTGCCATGGCTACAGTCAACGCCATGGTGATGGGATTCGGCAGCAGGGCGTGTGACGTCACCGTGGTGATCGGGCCGTCGGTGGGGGCCTGTTGTTTTACACTGGAGAGAGAGCAGGCTGCAGACTTCTACTCTATCCACCCTGACTGTGTTCCTGACATGGCTGAGACCAGGCCTCATGTCAACATACGACTAGCCACCAGAATACTTCTCCAGAGGGAAGGGGTTCTGCCTGAGCGTATCCATGACGACACGGTGACTGACAGGCCGAGCGTGACCCTGTGCACATCCTGTCACCCTGAGGCCTTCTTCTCCCACGTCAGGGACGGGCTTAACTTCGGAACGCAGATTGGCTTCCTGTGGATGGACGAAACAGGAACTACTGACTGTTTCAGTAGTTCAGAACACTGAATTaatttatgtacagtaccagtcaaaaggtttagaacacctactcattccagggtttttctttattttgactattttctacattgtagaataaaagtgaagacatcaaacctatgaaatcacacatatgaaatcatgtagtaatcaaaaaagtgtttaatatatttatatttgagattcttcaatgtagggaccctttggcttgatgacagctttacacactcttggcattctgtcaaccagcttcatgaggaatgatagtcccactaagcgcaaaccatatGGGATGGAGTATCTCTGCGCCACtcgaatgctatggtagccatgctggttaagtgtgccttaaattctaaataaatcactgacagtgtcacgatcaaagcaccccacaccatcccaCATCCTCGTCcatacttcacggtgggaaagacacatgcagagatcatccgttcacctactctgcgtctcacaaagacacaatggtttaactttaaaagttcttgaaattttccacattgactgacttTGATGTCTTAAAGTCATTATGGATTGTAttttctgtttgcttatttgagctgttcttgacataatatagacttggtcttttaccaaatactgTCTGCTatataccaccctaccttgtcacaacacaactgattggctcaaacgtattaagaaggaaagaaattccacaaatgaacaggtatacctgttaattgaaatgcattccaggtgactacctcatgaagacggttgagagaatgccaagtgtgattaaagctgtcgtcaaggcaaagggtggctactgtgaagaatcttacataaaacatattttgatttgtttaatacttttttggttactacatgattccatatgtgttatgatgttttgatgttttcatagttttgatgtcttcactgttattctacaatgtagaaaatagtccaaataaagaaaaaccctggaatgagtaggtgtgtccaaacatttgactggtactgtatattaaatgCACATCTAGCCATATCTGTCTGTGGTAAAGTTGCATGCAACATAAAAGCGGTACACTCCAGATATGATTAATCTTCCCATGAATATTCACTTCATATGCAAACACTTATTCATACACAATGCAttattgtgtttgtgtgaggATACAGAATTATTTTGGTGCCATTATTTTGGTTCCACAGAAATACAGTAGCAGGAGATCTGATATATCAAAAGGTGGCGATAGCGCCACCAAAATAATACTGTATCCTCACACAAATACGATAATGCATTGTTTGTTTATCTTTGTCTCAATCTCTTTATTTGAAAGATCTCAGGAATCACATCTGTATGAATAGGCCATGTGGGGTGCACATAAATGAAAACCCAATATAGAAAGTTATATTAAAAGAACCTCCATAGCAAGGCATATAAAGTATCTCTATCTTGTATGATCTTGTATTTTAGTGTTTTATGAGGCCATGGTCTATTAAAGCTACTGTTAAACACATCTTCACTGCATTGTATAAGTTCCACACCAGCTACTTTAATTAAACCTGACTAATTAAGACCAA
>TU322771
tggggaagaaccctggaatgagtaggtgtgtccaaacatttgactggtactgtatattaaatgCACATCTAGCCATATCTGTCTGTGGTAAAGTTGCATGCAACATAAAAGCGGTACACTCCAGATATGATTAATCTTCCCATGAATATTCACTTCATATGCAAACACTTATTCATACACAATGCAttattgtgtttgtgtgaggATACAGAATTATTTTGGTGCCATTATTTTGGTTCCACAGAAATACAGTAGCAGGAGATCTGATATATCAAAAGGTGGCGATAGCGCCACCAAAATAATACTGTATCCTCACACAAATACGATAATGCATTGTTTGTTTATCTTTGTCTCAATCTCTTTATTTGAAAGATCTCAGGAATCACATCTGTATGAATAGGCCATGTGGGGTGCACATAAATGAAAACCCAATATAGAAAGTTATATTAAAAGAACCTCCATAGCAAGGCATATAAAGTATCTCTATCTTGTATGATCTTGTATTTTAGTGTTTTATGAGGCCATGGTCTATTAAAGCTACTGTTAAACACATCTTCACTGCATTGTATAAGTTCCACACCAGCTACTTTAATTAAAC

Function

symbol description
lacc1 Predicted to enable copper ion binding activity. Human ortholog(s) of this gene implicated in juvenile rheumatoid arthritis. Orthologous to human LACC1 (laccase domain containing 1).

NR:

description
PREDICTED: laccase domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597635.2 False 3077 mRNA 0.43 5 63449360 63457571
TU322771 True 598 lncRNA 0.35 2 63414756 63457553

Neighbor

gene id symbol gene type direction distance location
LOC110520367 tnfsf11 coding upstream 214703 63225253 ~ 63234657 (+)
LOC110520366 akap11 coding upstream 244765 63173236 ~ 63204595 (+)
LOC110520364 LOC106586514 coding upstream 320345 63124380 ~ 63129015 (+)
LOC110520363 NA coding upstream 329953 63113667 ~ 63119407 (+)
LOC110520359 LOC106586511 coding upstream 441441 62947318 ~ 63007919 (+)
serp2 NA coding downstream 62233 63519786 ~ 63525770 (+)
gtf2f2b LOC105016382 coding downstream 168269 63625840 ~ 63682242 (+)
LOC118944562 LOC106562846 coding downstream 430687 63888258 ~ 63889211 (+)
LOC110504443 fbxo47 coding downstream 437094 63894665 ~ 63900193 (+)
LOC110520383 LOC106586541 coding downstream 515108 63972679 ~ 63974476 (+)
G284600 NA non-coding upstream 57643 63391453 ~ 63391717 (+)
G284595 NA non-coding upstream 62410 63386442 ~ 63386950 (+)
G284591 NA non-coding upstream 68997 63380128 ~ 63380363 (+)
G284582 NA non-coding upstream 86988 63361887 ~ 63362372 (+)
G284575 enox1 non-coding upstream 96849 63348668 ~ 63352511 (+)
G284646 NA non-coding downstream 12785 63470356 ~ 63470637 (+)
G284858 NA non-coding downstream 43603 63501174 ~ 63501407 (+)
G284968 kctd4 non-coding downstream 191367 63648938 ~ 63661435 (+)
G284975 NA non-coding downstream 217660 63675231 ~ 63720212 (+)
G284599 NA other upstream 58076 63390931 ~ 63391284 (+)
G284537 NA other upstream 136966 63267119 ~ 63312394 (+)
G284313 NA other upstream 426769 63016326 ~ 63022591 (+)
LOC110504398 LOC106586506 other upstream 742390 62705451 ~ 62712740 (+)
G284986 LOC106586530 other downstream 248997 63706568 ~ 63722064 (+)
G285001 NA other downstream 285435 63743006 ~ 63745493 (+)
G285203 NA other downstream 613861 64071432 ~ 64083982 (+)
G285763 NA other downstream 848941 64306512 ~ 64307360 (+)
G286679 NA other downstream 1651685 65109256 ~ 65109637 (+)

Expression


Co-expression Network