LOC110520372 (tsc22d1)


Basic Information

Item Value
gene id LOC110520372
gene name tsc22d1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63527843 ~ 63601105 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974900.1
TTTTTCCCAGTTTCGGCAGAGGGTGCATCCTCTAAATAATTTATGAAAATGAAATCAGCTGAGCCGCAGGTAGGGGCGTTTTCTACATAGATTATGCAAATATTAGTATCCCTCCACCAATCGGGTGCATCGGAGCGCTGTTTTTCTTAGATGCATTATGCAAATGTCCCCGGGCTGCAGATTTTCAGCCGAGCGGAGATGAGCTGACCTTGGAGATTCTTTGTGCTGCAGCGGTAGATAGATGTTCAGGCTTCCCGGGATACGATGCTTTTCTGAAGGGACATAAAGTGCCTGCTAACGCCTCCGAACCACGGAACTAGAGAATGTGATTTGTGATACACGATAATCGTCGAGAGAGGAGTTTTTCGTTGCTTAAAGCTTGGTTTATATCTGTGATATAGCATGAATAGTCCGTACTATACAACAGTGGCGATGGATCTCGGTGTTTGCCAGTTAAGGAATTTTTCTATCTCGTTTTTATCTTCGTTACTGAGCACGGATAGTTCACCTGTCAGGCTCGACAATAGTTCGTCAGGAGCCAGTGTGGTGGCCATAGACAACAAAATTGAACAGGCTATGGACCTGGTGAAGAGCCACCTGATGTACGCagtgagggaggaggtggaggttcTGAAGGAGCAGATCAAGGAGCTGATTGAGAGGAACTCCCAGCTTGAGCAGGAGAACAGTCTTCTGAAGACCCTGGCCAGCCCAGAACAGATGGCTCAGTTCCAGGCCCAGACCCAGACaggctcccctccctcctccacccagcCTCCAGCCCAGGCACCAACCCTACCCCTGACCCAACCATCACACAACTCTGGACCCTCTGCGTAGCATCACCTCCTACCCCCAGAGAGGGGTAGATGAGGAAGTCTATCAACCAACCAGGGCCTGACTGACTTGACAGTCCTCAGACAGACTCCTGTTCTAACGCTGCAGAACAACCAGGCCTTCATTGCACGGGGCTACGCTGTTAAGACAAGAATTTGCACATATTTAACTTTGAGAGCGGCGACAGGTGTTGTCATCGTTTCAAGACTATTAAAAACACTATCAAAGATAATCTGcctaggagaggagggaaaggggcTGTTATAGGAGAATGAACATTGCCAAAAAATTCATGGacttaggagagagagagaacaagattgTCTGACTAAGAAAAACAAAACCAACAAGAAAGTAGACATGACTTAGTTACTGTGCCTGTGTCAATGAATTTCAAGTGATGTCGACTTCAGTGGTAACGATGATGGAGGGAGATAGTAACGGCCATGCTTTGCTGAATCCTGATAATGTAAATAAATACAGTGGTTCTCTTCTGCTTGCgtgctacagagagacagacggagaatGGAGCACCTCTCATGGTGACAACGTGAAAAATCAGAGGATTATCATGGTGTGATAGTCCCCATCTGGCATTTGGCGAGTGAGGGGGAGGAGATCTGAAGGGAGAACACGACAACATTTCCATGGACGTCATCATTTAAACTGTGGGATTGAATGGAGTATTGTAGCCTACACTTGCTTATTAAAAGAGATGATGATTATGACATTATTTTAATTTGAACCCCTCAGCCTTGCGCCCTGTTAAACCTCATTGCGGCTTCTCTTCTCATGTAAAGGAGCACAGGGGCTGAGATGTTTGGCTAAGCTGCATTTTCAAAAATGAGTTGATGGGCTTTCTACATTGTGTATATTTCTGTATATTTAGTGTAATATAGTGACATAAGGAGAGAAGACAGACGCTATTTAGGTGAAGTACAAATGGTGAGTGATCTAGGCCTAGTAATGGGCTGGTCTGAAGATATGTGCTGTCTTTTTAATGCTGTAATTCAGGACAATAGAGCTGTGGAGGTTATTTAACTGGCAAATATCCAGTATCCATATCTTCGGCTGCAACATTAACGCCTACTGTAAACCATCGTTCACTTGAAATGATTTGAagtaaatgtattttgttttcatTTTGACGGTAAAGTACTTCCGGATGATCAGCTCTTAAACATAACACACACGTTACTCTGAATATCAGAAAGATGAACTGAAATGGATTCTTTGCATTCTATGTATACGTTGTATGCTCATGTTCCGTGCATGTTTCCTCAAACCAAATGAGGTATTGTAAACATACTTAACACAATTGCACTTGACAGTTTCACTTCACAACTTTCAATAAAATGTTAAAGGAATAATCAA
>XM_036974901.1
TCAGTCGCTAGTTCTCCTGCCTTGGAGACGCATGCAGaggattgacacacacacacacaccaaccgaCACACACAGCCCTGGCTTGTCCCCTCATCTCTACCACTGCTCTCCACACTCCGGTGGGACTCAGAGAAGATAAAAAGAAAGGGAGCGAGGGACTAGAAAAGAGGAATATCTGATTCTATtggaggagagaacagacagcCCGATGAGAGAGCAGGTGGTCCGGGTGCAAGGCCAGGACGAGATGGCCATGAAGCTGCTGTTCTGGGAACTGGAGCAGCACCTCAAGAGTTCGTCAGGAGCCAGTGTGGTGGCCATAGACAACAAAATTGAACAGGCTATGGACCTGGTGAAGAGCCACCTGATGTACGCagtgagggaggaggtggaggttcTGAAGGAGCAGATCAAGGAGCTGATTGAGAGGAACTCCCAGCTTGAGCAGGAGAACAGTCTTCTGAAGACCCTGGCCAGCCCAGAACAGATGGCTCAGTTCCAGGCCCAGACCCAGACaggctcccctccctcctccacccagcCTCCAGCCCAGGCACCAACCCTACCCCTGACCCAACCATCACACAACTCTGGACCCTCTGCGTAGCATCACCTCCTACCCCCAGAGAGGGGTAGATGAGGAAGTCTATCAACCAACCAGGGCCTGACTGACTTGACAGTCCTCAGACAGACTCCTGTTCTAACGCTGCAGAACAACCAGGCCTTCATTGCACGGGGCTACGCTGTTAAGACAAGAATTTGCACATATTTAACTTTGAGAGCGGCGACAGGTGTTGTCATCGTTTCAAGACTATTAAAAACACTATCAAAGATAATCTGcctaggagaggagggaaaggggcTGTTATAGGAGAATGAACATTGCCAAAAAATTCATGGacttaggagagagagagaacaagattgTCTGACTAAGAAAAACAAAACCAACAAGAAAGTAGACATGACTTAGTTACTGTGCCTGTGTCAATGAATTTCAAGTGATGTCGACTTCAGTGGTAACGATGATGGAGGGAGATAGTAACGGCCATGCTTTGCTGAATCCTGATAATGTAAATAAATACAGTGGTTCTCTTCTGCTTGCgtgctacagagagacagacggagaatGGAGCACCTCTCATGGTGACAACGTGAAAAATCAGAGGATTATCATGGTGTGATAGTCCCCATCTGGCATTTGGCGAGTGAGGGGGAGGAGATCTGAAGGGAGAACACGACAACATTTCCATGGACGTCATCATTTAAACTGTGGGATTGAATGGAGTATTGTAGCCTACACTTGCTTATTAAAAGAGATGATGATTATGACATTATTTTAATTTGAACCCCTCAGCCTTGCGCCCTGTTAAACCTCATTGCGGCTTCTCTTCTCATGTAAAGGAGCACAGGGGCTGAGATGTTTGGCTAAGCTGCATTTTCAAAAATGAGTTGATGGGCTTTCTACATTGTGTATATTTCTGTATATTTAGTGTAATATAGTGACATAAGGAGAGAAGACAGACGCTATTTAGGTGAAGTACAAATGGTGAGTGATCTAGGCCTAGTAATGGGCTGGTCTGAAGATATGTGCTGTCTTTTTAATGCTGTAATTCAGGACAATAGAGCTGTGGAGGTTATTTAACTGGCAAATATCCAGTATCCATATCTTCGGCTGCAACATTAACGCCTACTGTAAACCATCGTTCACTTGAAATGATTTGAagtaaatgtattttgttttcatTTTGACGGTAAAGTACTTCCGGATGATCAGCTCTTAAACATAACACACACGTTACTCTGAATATCAGAAAGATGAACTGAAATGGATTCTTTGCATTCTATGTATACGTTGTATGCTCATGTTCCGTGCATGTTTCCTCAAACCAAATGAGGTATTGTAAACATACTTAACACAATTGCACTTGACAGTTTCACTTCACAACTTTCAATAAAATGTTAAAGGAATAATCAA
>XM_021597639.2
TCCCATCGGTCTCGTCACACTTCAACGGTTCGAGCCACAGTGCAAGAACAAGAAGGCGGACTGGCTGTGAATAGCTTTTGGAAGAGGGAGTGATACAGCAAACATTggactagctaacgttagctataacAAAGACTTTTCAGAATGGATTAACCCGTTTTGCGAGATAATTAAGTGGTTATATTCTCCTAAGGACAACCTTATATCGGTAAAGGATTGCTTGTTTTCATTTTTTGCTTCTGAGAAATTCAATAATGCAACTCACCACAGTGTGTGGATAGTGATGGAGCTAACGTTGCACTTCTGTATCAGCTCTCGCTTTGGATGCTTACTGCTTACTCAGTTTGTGTTATAACAATTTATCAATTATAACAATTTACCTATTGAGATAATATAGTACAACGACGAAATGCTGGCTTGTATGTGAGAACATACGCGTCTGTAACTGGCTAGCAAGCCCATACGCTTATGTTAgactagctaacaagctagttaGCTTGTTAGCATTTCGGCTCGTCAACTGATTGTCAAACGCGAGCATTTTCCGTCACGAGGGAAGACGTTTAGAAATCCCAAAAAGCTAAATGTTTGAACCTTGTCTTTAAAACAGATTTATTTATTGTCGGTTGATATTAAGTTATTGTTAAATATCAGTTTTTGCCAAAACGGCTGCCCTAACGAAGTGTAACGTTATCCCCTGGAATCTTTCAAAATGCACCATCCTCATTCtgcaggagactctggcagcgtcAGAAAGATGGCGCACCCGGCGAATTTTCCTAGAAGGGGTAATGTTAGCAACATTAACACCGGCGCCGGGAGTGTTCCCACGTTGTCAACACCGACTAGTCCAGCTGTTAGCAAATGCCACGTTCCCACTGAAGACTACCAATCCCCCCTATTGATGCAGTCTCAACCTCCTGTTGGATCATCCTCCCCTGGGCCTCAGCACCCTCCCCACAGCCTTAACCTGCACTCCCAGCCACAGCCCCAGGCTCTCTCCTCTGGGTCTCagatgatgatgaagaagaagagtgGCTTCCAGATCACCAGTGTGACTCCAGCACAGATCTCTGTGAGCACCAACAACAGCATAGCGGAGGACACAGAGAGCTATGATGATCTGGATGAGTCTCATACAGAGGATCTGTCCTCTTCAGAGATCCTGGATGTCTCCCTCTCCAGGGCCAATGACATGGCTGGGGGTGCAAGGAGCTCCTCAGAGGAGACGCTGAATAACTTTCATGAGGCGGACACCCCCGGGGCTATCTCCCCCAACCAGCCCCCCCACTCCTTGCCCCAGGGTCCCCAGCACGGAGGGATGGTGAACGGAAATGtgcaccactaccatcaccagaGGCAACATAATCACCCTCAGCAGGCCCTGGCTCAGCCTCCTTCCTCTGACCCCCACTTTACTCCCACCTCTGGAGGGGCTGGGGGTGCCCTAAATATGCCTTCTACAATGGAGGTACCTCTGGAGAATGTTTCAGTGGGTTCTGCCAGTGTTGCTACTCAGCCTGTagcagctgtctctctccctggaaTGCACAGCTCTGCTGCAGTAGCTACTGTTAGCATAGCTAATCCCCTGACCAGCAATGTTTGTAATGTGAATATGTACAGCTCTTCCAATGTATCTGTGATGGGAGGTGTTAGCACCAGCGCTAGCAGCAGTGGTGGTGGCTTCCCCCCTAGTGTGATGAGTTGCAGTGGGAGGGTTGGAGGTTTGATGGGGAGTAACTTTGGCAACCCCAATGTCAATCTGATCCAACACCAAAGCTCTGGAACTGTGAACTCGAGCATCACTATGATTTCTGCTGCTGCCAGTGGCTCTGTGGTGTTGGGGCCCTCCAGTGGCACACAGGGTGGAGGAGCTGCCATACCTCAGCCAGGGATGAGCTCCTCAGGCATGGCTCtagcctcagtcccctcctccCATCCCCCCCCAACCCCAGCTCCTGCCACCACTAGCTCCCGTTTCAGAGTGGTCAAGCTTGACTCCAGCTCAGAGCCATTTAAAAAGGGCAGATGGACATGTGCTGAGTACTATGACAAGGAGACCCCAGCTTCGGCCCCTGCCCCCTTGTCCTCTGAGGCTactgcccctagtggccgggttGTGGACAGCATGCGGCCGTGTGGGCCTGAGTGTGTGAAAGTGGGGTCGGAGAGGGAGAACACCAGTGGGAGTTCAGTGAGCAGCACAGTCAGCACACTGAGTCACTACACAGAGAGTGTGGGAAGTGGAGATGCTGGAGGCCCCCCATTACTCCAGCCCCACCCCCACTACCAGGACTACTCCAACCCCCCTCCGTCCTTCCAGACCTCCCGCCCAGGTTTCCCCATGGTGGTGTCCCAGTCTCACCTGCTGCCCACCGTGGCTCCCTCAGTCCCTGCCAGCGTTCACCAGCCTGCCCCCATCAACATGGTGGGCCTCCAGACCACCATAGGCCACCAAACCACTCCTATGCCCCAGCAGCCGCTCACCTACGCCCAGGCAGCCTCCATCCCGGCTCCTGGCTCAGCTCAGAGCCTAGTGGGGGTGCTCCAGAAGCAGATGGGCTATGCTCTTACACAGCAGCCTTCTGCGACTCCCCAGGTAGCCCCGGTGCACAGGCTGAGCCAGGGAGGGGGCATGCCTCCAGACTACCCCCAGCCCAAGGCAGGCTTACCCCAACCTGCTGTTCCACAGGCCCTGCCTGGTTCCGGGCAGATGATGGGAGTCTCGCAGCAGCAGGTGGTTGGCTCCATGCCCCAGCTCCAACCCCAGGGTCTCGTCCAACAGCAGCCCCAGCAGACCTCAATCCAGGCCTCTGTTGCAGGAGGGGGGTTAATGCCTCAGATGGGCCCAGGAGGAGTGACTGGGTTTGGGCAGCAGCCACAAGGACACTCTCTCCCCCTGGACCACCAACATCAGCAACAACAGCAGTCATTCCCAAGCAAAGCCCAAGGACTTGCCACCCAGCTGTCTAACACTGCCCTCCCTAACCAGGGCTGTCTAGTCTCCAATGTGCTTCCTCCTAACCCACAGAGTGACTCCCAGCCCCAAAACGGCAGTGGCCTGGCCCAGTCTCACCCCCAGGCGCAGCCACCCGGGGTCAGCATGCCCCAGGACTTCAGCAGTGCACAGGCCCACACCCAGGCTGTGGCTTCCCAAGCCAGTGCCCTGTACGCCAGCCTGCCCTCCTTCACCACCACCCAGCTGGAGGATGCCCAGCGCCTGCTCTTCCAGGACCAGTCTGCCCTGCTGGCCCAGACCATGGCCAAGCTGGCTGGGGAGGGTGGCACTGCGGCAGGCACAGGCCTGGGGACTGAAAGTAACGCAGCCGCCGCCACGGCCGTCAGTGCCTTAACCTCTTCTGCCGGACTCTTCAAAGCCGTGGATGGAGACGATGATGGTTCGTCAGGAGCCAGTGTGGTGGCCATAGACAACAAAATTGAACAGGCTATGGACCTGGTGAAGAGCCACCTGATGTACGCagtgagggaggaggtggaggttcTGAAGGAGCAGATCAAGGAGCTGATTGAGAGGAACTCCCAGCTTGAGCAGGAGAACAGTCTTCTGAAGACCCTGGCCAGCCCAGAACAGATGGCTCAGTTCCAGGCCCAGACCCAGACaggctcccctccctcctccacccagcCTCCAGCCCAGGCACCAACCCTACCCCTGACCCAACCATCACACAACTCTGGACCCTCTGCGTAGCATCACCTCCTACCCCCAGAGAGGGGTAGATGAGGAAGTCTATCAACCAACCAGGGCCTGACTGACTTGACAGTCCTCAGACAGACTCCTGTTCTAACGCTGCAGAACAACCAGGCCTTCATTGCACGGGGCTACGCTGTTAAGACAAGAATTTGCACATATTTAACTTTGAGAGCGGCGACAGGTGTTGTCATCGTTTCAAGACTATTAAAAACACTATCAAAGATAATCTGcctaggagaggagggaaaggggcTGTTATAGGAGAATGAACATTGCCAAAAAATTCATGGacttaggagagagagagaacaagattgTCTGACTAAGAAAAACAAAACCAACAAGAAAGTAGACATGACTTAGTTACTGTGCCTGTGTCAATGAATTTCAAGTGATGTCGACTTCAGTGGTAACGATGATGGAGGGAGATAGTAACGGCCATGCTTTGCTGAATCCTGATAATGTAAATAAATACAGTGGTTCTCTTCTGCTTGCgtgctacagagagacagacggagaatGGAGCACCTCTCATGGTGACAACGTGAAAAATCAGAGGATTATCATGGTGTGATAGTCCCCATCTGGCATTTGGCGAGTGAGGGGGAGGAGATCTGAAGGGAGAACACGACAACATTTCCATGGACGTCATCATTTAAACTGTGGGATTGAATGGAGTATTGTAGCCTACACTTGCTTATTAAAAGAGATGATGATTATGACATTATTTTAATTTGAACCCCTCAGCCTTGCGCCCTGTTAAACCTCATTGCGGCTTCTCTTCTCATGTAAAGGAGCACAGGGGCTGAGATGTTTGGCTAAGCTGCATTTTCAAAAATGAGTTGATGGGCTTTCTACATTGTGTATATTTCTGTATATTTAGTGTAATATAGTGACATAAGGAGAGAAGACAGACGCTATTTAGGTGAAGTACAAATGGTGAGTGATCTAGGCCTAGTAATGGGCTGGTCTGAAGATATGTGCTGTCTTTTTAATGCTGTAATTCAGGACAATAGAGCTGTGGAGGTTATTTAACTGGCAAATATCCAGTATCCATATCTTCGGCTGCAACATTAACGCCTACTGTAAACCATCGTTCACTTGAAATGATTTGAagtaaatgtattttgttttcatTTTGACGGTAAAGTACTTCCGGATGATCAGCTCTTAAACATAACACACACGTTACTCTGAATATCAGAAAGATGAACTGAAATGGATTCTTTGCATTCTATGTATACGTTGTATGCTCATGTTCCGTGCATGTTTCCTCAAACCAAATGAGGTATTGTAAACATACTTAACACAATTGCACTTGACAGTTTCACTTCACAACTTTCAATAAAATGTTAAAGGAATAATCAA

Function

symbol description
tsc22d1 Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Is expressed in several structures, including forerunner cell group; mucus secreting cell; nervous system; pronephric duct; and pronephric mesoderm. Orthologous to human TSC22D1 (TSC22 domain family member 1).

NR:

description
TSC22 domain family protein 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974900.1 False 2211 mRNA 0.44 3 63527843 63532315
XM_036974901.1 False 1979 mRNA 0.45 3 63527843 63547249
XM_021597639.2 True 5086 mRNA 0.51 3 63527843 63601105

Neighbor

gene id symbol gene type direction distance location
LOC110520368 LOC106582175 coding downstream 91431 63319848 ~ 63436412 (-)
epsti1 epsti1 coding downstream 244871 63267118 ~ 63282972 (-)
LOC118944692 NA coding downstream 360795 63164294 ~ 63167048 (-)
chmp2ba chmp2b coding downstream 412483 63100074 ~ 63115360 (-)
LOC110520361 LOC106586409 coding downstream 471110 63028878 ~ 63056733 (-)
LOC110520374 kctd4 coding upstream 48070 63649175 ~ 63650920 (-)
LOC118964309 kctd4 coding upstream 58591 63659696 ~ 63661441 (-)
LOC110504432 tpt1 coding upstream 81365 63682470 ~ 63688255 (-)
LOC118964356 NA coding upstream 95908 63697013 ~ 63697211 (-)
LOC118964310 LOC106586530 coding upstream 105463 63706568 ~ 63710488 (-)
G285277 NA non-coding downstream 5826 63521727 ~ 63522017 (-)
G284861 NA non-coding downstream 20049 63507586 ~ 63507794 (-)
G284855 NA non-coding downstream 28273 63499271 ~ 63499570 (-)
G284848 NA non-coding downstream 33346 63494070 ~ 63494497 (-)
G284797 NA non-coding downstream 70290 63414756 ~ 63457553 (-)
G285338 NA non-coding upstream 47111 63648216 ~ 63660422 (-)
LOC110520378 LOC106586545 non-coding upstream 266078 63867161 ~ 63875738 (-)
G285444 NA non-coding upstream 350352 63951457 ~ 63953643 (-)
G285445 NA non-coding upstream 354305 63955410 ~ 63955880 (-)
G285466 NA non-coding upstream 391009 63992114 ~ 63992941 (-)
G284018 NA other downstream 812666 62714575 ~ 62715177 (-)
G277749 LOC106586429 other downstream 5938660 57584386 ~ 57589183 (-)
G277673 LOC106586423 other downstream 6124268 57402984 ~ 57403575 (-)
si:dkey-91i10.3 LOC106586420 other downstream 6230081 57270782 ~ 57297762 (-)
G275250 NA other downstream 8116356 55410143 ~ 55411487 (-)
G286522 NA other upstream 1368444 64969549 ~ 64970755 (-)
G286580 marco other upstream 1413154 65014259 ~ 65029736 (-)
G286638 NA other upstream 1453595 65054700 ~ 65075985 (-)
G286953 LOC107579696 other upstream 1634075 65235180 ~ 65235908 (-)
G286985 LOC106586592 other upstream 1697102 65298207 ~ 65300417 (-)

Expression


Co-expression Network