LOC110520374 (kctd4)


Basic Information

Item Value
gene id LOC110520374
gene name kctd4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63649175 ~ 63650920 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597642.2
gaagcagactcattctgttaccaGTGCGCTCTGCACTCCTCTCTATGCCAGTACCTCTCCGTGACGCTCCCatacgctaacacacacacacacactttgttacTGCACGCTACACACTTatcctgaggacacacacacagacaaaaagaCTGTGCGGTTGTTGAGCGGGAGCGGCATGGAATGGAACCTCAGAAGGATGGACAGTGAACTGAGACAGATCAACACAGACCTGCTGCAGCCCAGCAAGAGCATCAAGAAGCCCTCCTCAGGCACCATCACTCTCAACGTGGGGGGCTTTCTCTATGCCGCACACCGCACCACCCTCAGCCGCCACCAGGGGTCAGTGTTGGAGGAGCTGGCCAGCGGCAGGAAGCCCATCCAGCACACTGACTCCATGGGCAACCCCTTCATCGACCGCGACGGCCCCGTGTTCAGACACATCCTCAACTTCCTGCGGACCGGAGACCTGCAGCTGCCCGACGACTTCCGAGAGGTGGGCCTTCTGAGAGGAGAAGCAGAGTTCTACCGCCTCAGCGGATTGGTGGAGGCTATTTCAGAGTGGGAGGGGATGCGGGCGGCGCAACGGGAGCCCGCCTTCCTGGAGGTGACTGACGAGAGGTCGCAGGGCTTCAAGGTGTACTGCAGCGACCCCTCCTTCATCGACAAGATCAAAGGGCGCCTGGTTCAGATCTCAAAGAGCCGACTGGACGGCTTCCCGGAGGAGTTTGAGGTGTCGTCCAACGTGATCCAGTTCCGCCACTTCATCAAGTCGGACCCTGGCTCCAGGCTGGTGCTgaaacaggacagtaccttcctGTGTACCCTGGAGTGTCTGAAGCTAGAGACGGTGATGCTGGCCCTGAAGGCTGGCTTCTCTCTAATCAGCTCTCTGGACAGCAGCAAGGGATCTGTGGTGGCCGCAGAGGCTCTGCACTTTGTCAAGtaagagagggtggggagaggcAGGGAAGAGGGAAAGATGGGGGAGCAGGATCAGGAAGGGAATGAACAGGGAGGTGGATAGAGGGGaagactgggagagaggggggcaggtaCAGTAGGTAGTGAGGGAAACAAGAGGGAGACGAAGGgatgagggaaggagaaaggTGTCTGATTCCAGATTGACACCTAGCCCCTAGATTGAAACTGACGCAGGACAGTCATTTCTGTGCACTTTGTCTGGAGTCCAACCTCAGAGTCAAGAGAGAGATCATCCACCCTCACTGCTGCAGGACAGAACACAACCTCTCAGAGGACCAGTCCCCTACTGAATTACGCATACATAAGCTGCTGTTTCCATCCAGGCTGCTTCCCCTTCAAACCAGCCTTAGTGCACCGTGAGGTATTACATTGTGTGTTTTCGGTTGCTGTGTTTTGAGTGGAGTTGTGTGACCAAGCCTTTCTCTGGATTCTgaggggagactggggagaggtACAGTTGAACACTATACCTCTGACTGACTGTTGCTGATCATTGGACAAAAAAACTATTGTTTAATTGCAGTAACTTGCCTGACTAGATGGAAGGGAGGTCAGTGTGAATGCCCTGCAGCAGAGAAGCACAGAGAGTTTAGACCCAAAGGTTCAAATCTAGCATGATGCATGTGCAGTGAAGATTTTCAAATCAGACACCAACATTGTGATTGTAAGTGCTGTGAGTGAGTATGTGACAATGTGTGTTATTTTGGAAATGTGAATGTTTTGTTTCACACAAAATAAAAGTCATGAATATCGGCATGATTA

Function

symbol description
kctd4 Predicted to act upstream of or within ion transport and protein homooligomerization. Is expressed in hindbrain; hypothalamus; and telencephalon. Orthologous to human KCTD4 (potassium channel tetramerization domain containing 4).

NR:

description
BTB/POZ domain-containing protein KCTD4-like

GO:

id name namespace
GO:0051260 protein homooligomerization biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597642.2 True 1746 mRNA 0.53 1 63649175 63650920

Neighbor

gene id symbol gene type direction distance location
LOC110520372 tsc22d1 coding downstream 48070 63527843 ~ 63601105 (-)
LOC110520368 LOC106582175 coding downstream 212763 63319848 ~ 63436412 (-)
epsti1 epsti1 coding downstream 366203 63267118 ~ 63282972 (-)
LOC118944692 NA coding downstream 482127 63164294 ~ 63167048 (-)
chmp2ba chmp2b coding downstream 533815 63100074 ~ 63115360 (-)
LOC118964309 kctd4 coding upstream 8776 63659696 ~ 63661441 (-)
LOC110504432 tpt1 coding upstream 31550 63682470 ~ 63688255 (-)
LOC118964356 NA coding upstream 46093 63697013 ~ 63697211 (-)
LOC118964310 LOC106586530 coding upstream 55648 63706568 ~ 63710488 (-)
LOC118964357 NA coding upstream 60519 63711439 ~ 63711637 (-)
G285277 NA non-coding downstream 127158 63521727 ~ 63522017 (-)
G284861 NA non-coding downstream 141381 63507586 ~ 63507794 (-)
G284855 NA non-coding downstream 149605 63499271 ~ 63499570 (-)
G284848 NA non-coding downstream 154678 63494070 ~ 63494497 (-)
G284797 NA non-coding downstream 191622 63414756 ~ 63457553 (-)
LOC110520378 LOC106586545 non-coding upstream 216263 63867161 ~ 63875738 (-)
G285444 NA non-coding upstream 300537 63951457 ~ 63953643 (-)
G285445 NA non-coding upstream 304490 63955410 ~ 63955880 (-)
G285466 NA non-coding upstream 341194 63992114 ~ 63992941 (-)
G285582 NA non-coding upstream 523967 64174887 ~ 64175108 (-)
G284018 NA other downstream 933998 62714575 ~ 62715177 (-)
G277749 LOC106586429 other downstream 6059992 57584386 ~ 57589183 (-)
G277673 LOC106586423 other downstream 6245600 57402984 ~ 57403575 (-)
si:dkey-91i10.3 LOC106586420 other downstream 6351413 57270782 ~ 57297762 (-)
G275250 NA other downstream 8237688 55410143 ~ 55411487 (-)
G286522 NA other upstream 1318629 64969549 ~ 64970755 (-)
G286580 marco other upstream 1363339 65014259 ~ 65029736 (-)
G286638 NA other upstream 1403780 65054700 ~ 65075985 (-)
G286953 LOC107579696 other upstream 1584260 65235180 ~ 65235908 (-)
G286985 LOC106586592 other upstream 1647287 65298207 ~ 65300417 (-)

Expression


Co-expression Network