LOC118964309 (kctd4)


Basic Information

Item Value
gene id LOC118964309
gene name kctd4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63659696 ~ 63661441 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974902.1
gaagcagactcattctgttaccaGTGCGCTCTGCACTCCTCTCTATGCCAGTACCTCTCCGTGACGCTCCCatacgctaacacacacacacacactttgttacTGCACGCTACACACTTatcctgaggacacacacacagacaaaaagaCTGTGCGGTTGTTGAGCGGGAGCGGCATGGAATGGAACCTCAGAAGGATGGACAGTGAACTGAGACAGATCAACACAGACCTGCTGCAGCCCAGCAAGAGCATCAAGAAGCCCTCCTCAGGCACCATCACTCTCAACGTGGGGGGCTTTCTCTATGCCGCACACCGCACCACCCTCAGCCGCCACCAGGGGTCAGTGTTGGAGGAGCTGGCCAGCGGCAGGAAGCCCATCCAGCACACTGACTCCATGGGCAACCCCTTCATCGACCGCGACGGCCCCGTGTTCAGACACATCCTCAACTTCCTGCGGACCGGAGACCTGCAGCTGCCCGACGACTTCCGAGAGGTGGGCCTTCTGAGAGGAGAAGCAGAGTTCTACCGCCTCAGCGGATTGGTGGAGGCTATTTCAGAGTGGGAGGGGATGCGGGCGGCGCAACGGGAGCCCGCCTTCCTGGAGGTGACTGACGAGAGGTCGCAGGGCTTCAAGGTGTACTGCAGCGACCCCTCCTTCATCGACAAGATCAAAGGGCGCCTGGTTCAGATCTCAAAGAGCCGACTGGACGGCTTCCCGGAGGAGTTTGAGGTGTCGTCCAACGTGATCCAGTTCCGCCACTTCATCAAGTCGGACCCTGGCTCCAGGCTGGTGCTgaaacaggacagtaccttcctGTGTACCCTGGAGTGTCTGAAGCTAGAGACGGTGATGCTGGCCCTGAAGGCTGGCTTCTCTCTAATCAGCTCTCTGGACAGCAGCAAGGGATCTGTGGTGGCCGCAGAGGCTCTGCACTTTGTCAAGtaagagagggtggggagaggcAGGGAAGAGGGAAAGATGGGGGAGCAGGATCAGGAAGGGAATGAACAGGGAGGTGGATAGAGGGGaagactgggagagaggggggcaggtaCAGTAGGTAGTGAGGGAAACAAGAGGGAGACGAAGGgatgagggaaggagaaaggTGTCTGATTCCAGATTGACACCTAGCCCCTAGATTGAAACTGACGCAGGACAGTCATTTCTGTGCACTTTGTCTGGAGTCCAACCTCAGAGTCAAGAGAGAGATCATCCACCCTCACTGCTGCAGGACAGAACACAACCTCTCAGAGGACCAGTCCCCTACTGAATTACGCATACATAAGCTGCTGTTTCCATCCAGGCTGCTTCCCCTTCAAACCAGCCTTAGTGCACCGTGAGGTATTACATTGTGTGTTTTCGGTTGCTGTGTTTTGAGTGGAGTTGTGTGACCAAGCCTTTCTCTGGATTCTgaggggagactggggagaggtACAGTTGAACACTATACCTCTGACTGACTGTTGCTGATCATTGGACAAAAAAACTATTGTTTAATTGCAGTAACTTGCCTGACTAGATGGAAGGGAGGTCAGTGTGAATGCCCTGCAGCAGAGAAGCACAGAGAGTTTAGACCCAAAGGTTCAAATCTAGCATGATGCATGTGCAGTGAAGATTTTCAAATCAGACACCAACATTGTGATTGTAAGTGCTGTGAGTGAGTATGTGACAATGTGTGTTATTTTGGAAATGTGAATGTTTTGTTTCACACAAAATAAAAGTCATGAATATCGGCATGATTA

Function

symbol description
kctd4 Predicted to act upstream of or within ion transport and protein homooligomerization. Is expressed in hindbrain; hypothalamus; and telencephalon. Orthologous to human KCTD4 (potassium channel tetramerization domain containing 4).

NR:

description
BTB/POZ domain-containing protein KCTD4-like

GO:

id name namespace
GO:0051260 protein homooligomerization biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974902.1 True 1746 mRNA 0.53 1 63659696 63661441

Neighbor

gene id symbol gene type direction distance location
LOC110520374 kctd4 coding downstream 8776 63649175 ~ 63650920 (-)
LOC110520372 tsc22d1 coding downstream 58591 63527843 ~ 63601105 (-)
LOC110520368 LOC106582175 coding downstream 223284 63319848 ~ 63436412 (-)
epsti1 epsti1 coding downstream 376724 63267118 ~ 63282972 (-)
LOC118944692 NA coding downstream 492648 63164294 ~ 63167048 (-)
LOC110504432 tpt1 coding upstream 21029 63682470 ~ 63688255 (-)
LOC118964356 NA coding upstream 35572 63697013 ~ 63697211 (-)
LOC118964310 LOC106586530 coding upstream 45127 63706568 ~ 63710488 (-)
LOC118964357 NA coding upstream 49998 63711439 ~ 63711637 (-)
LOC110520375 LOC106586530 coding upstream 59553 63720994 ~ 63742610 (-)
G285277 NA non-coding downstream 137679 63521727 ~ 63522017 (-)
G284861 NA non-coding downstream 151902 63507586 ~ 63507794 (-)
G284855 NA non-coding downstream 160126 63499271 ~ 63499570 (-)
G284848 NA non-coding downstream 165199 63494070 ~ 63494497 (-)
G284797 NA non-coding downstream 202143 63414756 ~ 63457553 (-)
LOC110520378 LOC106586545 non-coding upstream 205742 63867161 ~ 63875738 (-)
G285444 NA non-coding upstream 290016 63951457 ~ 63953643 (-)
G285445 NA non-coding upstream 293969 63955410 ~ 63955880 (-)
G285466 NA non-coding upstream 330673 63992114 ~ 63992941 (-)
G285582 NA non-coding upstream 513446 64174887 ~ 64175108 (-)
G284018 NA other downstream 944519 62714575 ~ 62715177 (-)
G277749 LOC106586429 other downstream 6070513 57584386 ~ 57589183 (-)
G277673 LOC106586423 other downstream 6256121 57402984 ~ 57403575 (-)
si:dkey-91i10.3 LOC106586420 other downstream 6361934 57270782 ~ 57297762 (-)
G275250 NA other downstream 8248209 55410143 ~ 55411487 (-)
G286522 NA other upstream 1308108 64969549 ~ 64970755 (-)
G286580 marco other upstream 1352818 65014259 ~ 65029736 (-)
G286638 NA other upstream 1393259 65054700 ~ 65075985 (-)
G286953 LOC107579696 other upstream 1573739 65235180 ~ 65235908 (-)
G286985 LOC106586592 other upstream 1636766 65298207 ~ 65300417 (-)

Expression


Co-expression Network