LOC110504432 (tpt1)


Basic Information

Item Value
gene id LOC110504432
gene name tpt1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63682470 ~ 63688255 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110504432
ATTATCATCTACAAGGACATCATCACTGGGGATGAAATGTTCAGACATTTACAAGATCAAATAATCACCAAATGGGATCGTGTTCGAAGTTCAGGGAAAGGATGCGTCTCCAATGCAGAACATTGATGACTCTTTGCTGGGGGTGAATGCGTCGGCAGAAGTGCAGGATGACGTCTGTGAGTCCAGGACGGTCAATGGAGTGGACATCGTTCTCAACCACAGACTGCAAGAGACATCCTTCACCAAGGACTCATACAAAGGATATATCAAGGACTACATGAAGgtGTGCGTGTGTGCGCACATGATCAAGGCTAAGCTGGAGGAGAACAACCCAGATGGAGTGAAGCCCTTCACGACTGGAGCTCAGGAGGAGATCAAGATGATCATGGGCAACATGAAGAACTACCAGtttttttattttacaggTGAGTCTATGAACCCAGATGGTATGGTTGGTCTGCTGGACATCCGTAAGGACGGCATCACTCCCTTCAAAGACGGCCTGGAGATGGAGAAATGCCCAAGACCCTTTAGTTCAGTCTACTTGTctgcacacaagcctaactga

Function

symbol description
tpt1 Predicted to enable calcium ion binding activity. Predicted to be active in cytoplasm. Is expressed in brain; eye; lateral mesoderm; liver; and spinal cord. Orthologous to several human genes including TPT1 (tumor protein, translationally-controlled 1).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110504432 True 568 mRNA 0.47 6 63682470 63688255

Neighbor

gene id symbol gene type direction distance location
LOC118964309 kctd4 coding downstream 21029 63659696 ~ 63661441 (-)
LOC110520374 kctd4 coding downstream 31550 63649175 ~ 63650920 (-)
LOC110520372 tsc22d1 coding downstream 81365 63527843 ~ 63601105 (-)
LOC110520368 LOC106582175 coding downstream 246058 63319848 ~ 63436412 (-)
epsti1 epsti1 coding downstream 399498 63267118 ~ 63282972 (-)
LOC118964356 NA coding upstream 8758 63697013 ~ 63697211 (-)
LOC118964310 LOC106586530 coding upstream 18313 63706568 ~ 63710488 (-)
LOC118964357 NA coding upstream 23184 63711439 ~ 63711637 (-)
LOC110520375 LOC106586530 coding upstream 32739 63720994 ~ 63742610 (-)
LOC110520376 LOC106582183 coding upstream 54743 63742998 ~ 63779567 (-)
G285338 NA non-coding downstream 22048 63648216 ~ 63660422 (-)
G285277 NA non-coding downstream 160453 63521727 ~ 63522017 (-)
G284861 NA non-coding downstream 174676 63507586 ~ 63507794 (-)
G284855 NA non-coding downstream 182900 63499271 ~ 63499570 (-)
G284848 NA non-coding downstream 187973 63494070 ~ 63494497 (-)
LOC110520378 LOC106586545 non-coding upstream 178928 63867161 ~ 63875738 (-)
G285444 NA non-coding upstream 263202 63951457 ~ 63953643 (-)
G285445 NA non-coding upstream 267155 63955410 ~ 63955880 (-)
G285466 NA non-coding upstream 303859 63992114 ~ 63992941 (-)
G285582 NA non-coding upstream 486632 64174887 ~ 64175108 (-)
G284018 NA other downstream 967293 62714575 ~ 62715177 (-)
G277749 LOC106586429 other downstream 6093287 57584386 ~ 57589183 (-)
G277673 LOC106586423 other downstream 6278895 57402984 ~ 57403575 (-)
si:dkey-91i10.3 LOC106586420 other downstream 6384708 57270782 ~ 57297762 (-)
G275250 NA other downstream 8270983 55410143 ~ 55411487 (-)
G286522 NA other upstream 1281294 64969549 ~ 64970755 (-)
G286580 marco other upstream 1326004 65014259 ~ 65029736 (-)
G286638 NA other upstream 1366445 65054700 ~ 65075985 (-)
G286953 LOC107579696 other upstream 1546925 65235180 ~ 65235908 (-)
G286985 LOC106586592 other upstream 1609952 65298207 ~ 65300417 (-)

Expression


Co-expression Network