LOC118964310 (LOC106586530)


Basic Information

Item Value
gene id LOC118964310
gene name LOC106586530
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63706568 ~ 63710488 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974903.1
ATTGATGTTTTGGTTATGTTTCAGGATGCAGAGAGAAGCGCACACCCTGTTTCATCTGAGGCTGTGTCCTCCAGCACCGGCGATACAGTGCCAGAACAACAGTTCCTAGACCAGTCCCCCAGCAGCCAGGTACAGGTTCCAGATCTGTCTGAGGCAGAGGTTcagtcctctgcagcagaggcggAGTTCCCAGCTCAGTCATTAACCATCCAGGAGGCAGAGGTCCAGCAGACTCCAGATCAGTCAGACTCCACTCCAACACAGTCTCAAACTGCGGTCTCCAGCAGCGGGGAGCAGGCTCAAACTTCAAACCCTTCAGCAAAACCTGTTGCTAGTGCCCCAGCTTTAGTGACTGCCTCATTTGGATTTGGTGCACAGTTTGTCAAAAAGCCAGGGCAGTGGGAGTGTGACGCATGTCTTGTTAGAAATGAGGGGTCTGCAAGCAGTTGTGTTTCTTGTCAAACTCCAAACCCTGCAGCCAGCAGTGGTAAGCAGGCTCCAGATCAGTCAGACTCTACTCCTGCAGCTACCAGCAGCAGCCCTATAGACCTGTCTACCAAGAAGACCTCGGAGCCGGACTCCACATCGACATTTACGACAACCATTACTCAGGATGCTCCAAACTCATTTGGCTCCTTGGGCTTCAGTGATCTGGGAGGGGAAGGGATCTCCTTCGCTGATCTGGCACAGAACACCGGGGGTGAATTCGCCTTCGGAAAACAAGATTCTAACTTCTCGTGGGCGAATGCCGGGGCTACGTTGTTTGGAGCTGCAGCCCCACCCAAAgctgaaggaggggaggagaggagtcatGAAGAGGACGCTAATAATGTGGAAATTCACTTTGATCCCATAGTCACCCTACCAGAGGTGGAGACTAAGTcaggggaggaggatgaggagatccTGTTTAAGGAGCGTACCAAGCTGTACCGCTGGGAGAGAGACCTGGGCCAGTGGAAGGAGAGGGGTGTGGGAGACATCAAGATCCTCTTCCACCCCGATAAGAGGTTCTACCGGGTGCTGATGAGGAGGGAGCAGGTGCTGAAGGTGTGTGCCAATCACACCATCTGCCAGAGCATGGAGCTCAAACCCATGAACACCTCCAACCAAGCCCTCGTCTGGACCGCTACCGACTTTGCAGAGGGTGAGGGTAAGGTGGAGCAGTTGGCAGCCAAGTTCAAGACAGCAGAGCTGGCTGAGTGTTTCAGGAAGACCTTCTGTGAGTGTCAGAGCCGTATGAGCCCATCAGAGGCCTCGGCCCTCTCCCCCCAGATGTCCAGGGTCCAGGAACATTCCAGAGACGCCAACCCCCAGGTGTACCTCTCCATCTCCGCTGACGACGAGCCGCTGGGAATGGTCACCATAGAACTGTTCTCTCACATTGTCCCCAAGACGGCTGAGAACTTCAGAGCGCTGTGTACAGGACAGAAAGGCTTCGGGCTGCGCAACTCTGTCTTTCACAGGATCATACCGGACTTCATGTGTCAGGGTGGCGACCTCACCAACCAGGACGGGACAGGAGGGAAGTCCATCTACGGGAACAAGTTTGAGGACGAAAACTTTGATGTGCGCCACACGGGTCCGGGGCTGCTGTCCATGGCCAACCATGGCCGAGACACCAACAACTCCCAGTTCTTCATCACATTGAAGAAGGCTGAGCACCTGGACTTTAAACACGTGGCCTTTGGCTTCGTCAGAGAGGGCATGGATGTGGTCCGCAGAATGGGAGAGCTGGGCACCAAGACTGGCAAACCCAGCAAGAAGATTGTCATCACCGAATGTGGACAACTGTAGAGCTTGAGCTTTGGTCACTGACTGGACAACTCCACTGTAGGGCTGAACATGTAGTCACTGACTGGATGGCAATGGGCCTTCACTCTGGTCATGGACTGGGGAGTTATAGCATTTCAAACTGAGCACAATTATAGTAGGCAGATAtcaaatgataccctattccccatatagtgcactccACTTGGGGCTCAGCTTAAAAAGAGTGCACTGGTAGCCCAATATGGGGAGAATAGGCTTTAATTTAAGACCGGCCCAGTGTCTCCTTCTGATGAGTGTTGCACTTTCTCCCTGCCGCATCCTGAGGGTTGCATGTCCCAGTGTGAATCCCCAGACtctttgtgtgtgtataatgtacatGGACTACATTTAGTCTTTTTTGTGCATGTGTTCCAATAAGAGTTGACAGCGCTGGTTCCTTCATAAGCTCCCTAACCCAATTTGTTTTGTGTAATTGTCTTAAGATTATTGCAACCTTTTTTTAAAACCAACCAATGTTCGTTTGGTACTGTGTTCCTCTTGCTGCCTGTGTATACTTTTTTaggtgtgtttttttgttgtgtgtAGGCTATACATTGATTTCATAATGTGCAAATTGAGACTCTACACCTGTTTTAAACTAAAAGGTAGGAATATGAAGTCTGACAATTTGGGAGAGGTGACatactaaatatattttatggTCGGGTCACAATTGGGGTTAACAATTCTTATtgtcaataaataaatacaggatGCTGGAGACTGTCTTTAAAAATAAAGTTGCTTTATAACTGAA

Function

NR:

description
E3 SUMO-protein ligase RanBP2-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974903.1 True 2572 mRNA 0.50 7 63706568 63710488

Neighbor

gene id symbol gene type direction distance location
LOC118964356 NA coding downstream 9357 63697013 ~ 63697211 (-)
LOC110504432 tpt1 coding downstream 18313 63682470 ~ 63688255 (-)
LOC118964309 kctd4 coding downstream 45127 63659696 ~ 63661441 (-)
LOC110520374 kctd4 coding downstream 55648 63649175 ~ 63650920 (-)
LOC110520372 tsc22d1 coding downstream 105463 63527843 ~ 63601105 (-)
LOC118964357 NA coding upstream 951 63711439 ~ 63711637 (-)
LOC110520375 LOC106586530 coding upstream 10506 63720994 ~ 63742610 (-)
LOC110520376 LOC106582183 coding upstream 32510 63742998 ~ 63779567 (-)
LOC110520377 LOC106586531 coding upstream 70509 63780997 ~ 63822595 (-)
LOC110520378 LOC106586545 coding upstream 156673 63867161 ~ 63875738 (-)
G285338 NA non-coding downstream 46146 63648216 ~ 63660422 (-)
G285277 NA non-coding downstream 184551 63521727 ~ 63522017 (-)
G284861 NA non-coding downstream 198774 63507586 ~ 63507794 (-)
G284855 NA non-coding downstream 206998 63499271 ~ 63499570 (-)
G284848 NA non-coding downstream 212071 63494070 ~ 63494497 (-)
G285444 NA non-coding upstream 240969 63951457 ~ 63953643 (-)
G285445 NA non-coding upstream 244922 63955410 ~ 63955880 (-)
G285466 NA non-coding upstream 281626 63992114 ~ 63992941 (-)
G285582 NA non-coding upstream 464399 64174887 ~ 64175108 (-)
G284018 NA other downstream 991391 62714575 ~ 62715177 (-)
G277749 LOC106586429 other downstream 6117385 57584386 ~ 57589183 (-)
G277673 LOC106586423 other downstream 6302993 57402984 ~ 57403575 (-)
si:dkey-91i10.3 LOC106586420 other downstream 6408806 57270782 ~ 57297762 (-)
G275250 NA other downstream 8295081 55410143 ~ 55411487 (-)
G286522 NA other upstream 1259061 64969549 ~ 64970755 (-)
G286580 marco other upstream 1303771 65014259 ~ 65029736 (-)
G286638 NA other upstream 1344212 65054700 ~ 65075985 (-)
G286953 LOC107579696 other upstream 1524692 65235180 ~ 65235908 (-)
G286985 LOC106586592 other upstream 1587719 65298207 ~ 65300417 (-)

Expression


Co-expression Network