LOC110505387 (LOC106586543)


Basic Information

Item Value
gene id LOC110505387
gene name LOC106586543
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63881857 ~ 63886501 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021584574.2
cccatACACTGCCCCCACTTGGACACTGAAGCAGAGGCAACACTGgtgatagagggaaagagagagtaagagagagcaagcagacagagagctggtctggtctgggttaTGGCGTGCAGCATTGACAAGCCTGTTAACTATAGAGAGTCATATGAATGCTTTATAACATGGGTCTGTGAATCTGCATAGAACACATAAACATAGACTGCCAGCCACTTCCCGCCTCCTGTAGCATTGGACAGCACCCGGCTGGATATACATGTCACAGGGGCAGGGGGACAGTCACAGTCAAAGAGAGACTAGCTGAGCCCAGGGGACTACAATCAACAGGTGGAGCTGAACAAATAAGCTATTGGTCGCAGGCTCAGCCAACAAGACCAGGGACAGAAGCGTCAGTAGAAGGccctgtcagagagaacactatAGAGAGCATGTGGAAGCCACAgccattgtaaaaaaaaacaacgcCAGAGACAACAATTGAAGCCTAGCCCCAGAGACTGAAGTCACTGCACAGAGCTCCGGAGACAACACTGAAGCCTAGCCCCAGAGACTGAAGTCACTGCACAGAGCTCCGGAGACAACACTGAAGCCTAGCCCCAGAGACTGAAGTCACTGCACAGAGCTTCGGAGACAACAACTGAAGCCTAGCCCCAGAGACTGAAGTCACTGCATAGAGCTCCGGAGACAACACTGAAGCCTAGCCCCAGAGACTGAAGTCACTGCACAGAGCTCCGGAGACAACACTGAAGCCTAGCCCCAGAGACTGAGGTCACTGCACAGAGCTCCGGAGACAACACTGAAGCCTAGCCCCAGAGACTGAAGTCACTGCATAGAGCTCCGGAGACAACACTGAAGCCTAGCCCCAGAGACTGAAGTCACTGCACAGAGCTCCGGAGACAACACTGAAGCCTAGCCCCAGAGACTGAAGTCACAGCACAGAGCTTCGGAGACAACACTGAAGCCAGTGAATCCACAACCCCTGAGCCCCAAAGAGACCACCACTGCGGGATGACTTCAACACTGTGGCTGACTCTAGACCCACTGGAGTTCCAACTGTTCAGCTGGGGACCAGAGCTAAAGACCAGAATAATAGGATACTAAACTCAAGTCTCAAAGGAAttattgtgtggttgtgtgtgttgctctgtgtgtgtgtggttctgtgtgtgttgtcttgGGTGTAGCAGTGCAGTGTGTGAGCTAGTTTTGTTTTAAgttctgtgtgtgtagttctccATCAGCAGATGTTGCAGAAATGGCCAGCATGGTGGTCCAGCTCTTGGGCTTCTTCCTGGGTCTGTTGGGGCTTGTAGTTAGTGTAGTTGCTACGGTGCTCCCCCATTGGCGGCGGACGTTATATGTGGGCTCTAACATCATCACAACCACTGCATACATGAAGGGGCTCTGGATGGAGTGTGTGTGGCACAGCACGGGCATCTACCAGTGTGAAGTACATCGCTCAATGCTGGCTCTGCCACCTGACCTGCAAgCAGCGCGGGCGTTGATGGTGCTATCCTGTCTGACCTCCACCCTGGCAGTCCTGGTGTCCTCTACAGGGATGAAGTGTACCCGCTGTGCCCGACACTCCCCCACCAAGCACGTCCTGGCGATCAGTGGAGGGGTCTGCTTCCTGTCTGCAGGCATGCTCTGCCTTATCACTGTCTGCTGGACAACCAATGATGTCATCCTCGACTTCTACAATCCCATCCTACCTGAAGGTATGAAGTATGAGATTGGCATGGCAGTGTATTTGGGCTATGTCTCGGCCTGTCTAAGTCTGATGGGAGGGGCGGTGCTCTGTTGGAACTGTGAGGGGCGGCCCGGGAACGCCCTCCCCCTCCAGCTACCTCGTCgtcaccaccctcctcctccccctgtcttcAGCACTTTAAACACCCCAGCACCCCCCTACTATCCCCCTGCCGCACTGAATGGCAACCGCACTCCCTCACGCACCTCAGTGTCCAGCAGTGGCTACAGACTCAACGACTATGTCTGAGGGATGGAGTACACACTCAATTATTGCTTCCTAGTGTGGAAGTGGACACACTTAATTATTATGTTTGAATGTGGAATATAATACAGACTGATTGACTATGTCTAAGGGAGGTTCACACTCAATGACTTTCCAGACAACCTCCAGAGAGTGACTGAGGATGAGTGTGTTTTACAGTATTGATGTTGTTCAGGTTGTGTCCTTCTTCTCTGAGGTAAAGTCCACAAGGTAATCCTGTCCTCTTTATCCTGTTGACTTTGTATGTTTACTATAAGAATCCAGAAACACACTTTTGAACATCAACAGCCTTATTCCCTAATACAAAAGGAGCTTCCTTCGAAAAGGCCTTTAGGACAAAGACAGCCTATACCATAATGAGGACAAAGACAGCATACACCATAATGAGGACAAAGACAGCATATACCATAATGAGGACAAAGACAGCATACACCATAATGAGGACAAAGACAGCATATACCATAATGAGGACAAAGACAGCATATACCATAATGAGGACAAAGACAGCATATACCATAATGAAGACAAAGACAGCATATACCATAATGAGGACAAAGACAGCATATACCATAATGAGGACAAAGACAG

Function

NR:

description
claudin-14-like

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021584574.2 True 2605 mRNA 0.50 4 63881857 63886501

Neighbor

gene id symbol gene type direction distance location
LOC110520378 LOC106586545 coding downstream 6119 63867161 ~ 63875738 (-)
LOC110520377 LOC106586531 coding downstream 59262 63780997 ~ 63822595 (-)
LOC110520376 LOC106582183 coding downstream 102290 63742998 ~ 63779567 (-)
LOC110520375 LOC106586530 coding downstream 139247 63720994 ~ 63742610 (-)
LOC118964357 NA coding downstream 170220 63711439 ~ 63711637 (-)
LOC110505395 LOC106586542 coding upstream 14967 63901468 ~ 63904218 (-)
LOC110520380 LOC106586540 coding upstream 25498 63911999 ~ 64174276 (-)
LOC110520379 NA coding upstream 599288 64485789 ~ 64641565 (-)
LOC110520388 cssa25h3orf38 coding upstream 966002 64852503 ~ 64855851 (-)
LOC110520386 LOC106586581 coding upstream 975525 64862026 ~ 64890987 (-)
G285338 NA non-coding downstream 221435 63648216 ~ 63660422 (-)
G285277 NA non-coding downstream 359840 63521727 ~ 63522017 (-)
G284861 NA non-coding downstream 374063 63507586 ~ 63507794 (-)
G284855 NA non-coding downstream 382287 63499271 ~ 63499570 (-)
G285444 NA non-coding upstream 64956 63951457 ~ 63953643 (-)
G285445 NA non-coding upstream 68909 63955410 ~ 63955880 (-)
G285466 NA non-coding upstream 105613 63992114 ~ 63992941 (-)
G285582 NA non-coding upstream 288386 64174887 ~ 64175108 (-)
G285624 NA non-coding upstream 324585 64211086 ~ 64211389 (-)
G284018 NA other downstream 1166680 62714575 ~ 62715177 (-)
G277749 LOC106586429 other downstream 6292674 57584386 ~ 57589183 (-)
G277673 LOC106586423 other downstream 6478282 57402984 ~ 57403575 (-)
si:dkey-91i10.3 LOC106586420 other downstream 6584095 57270782 ~ 57297762 (-)
G275250 NA other downstream 8470370 55410143 ~ 55411487 (-)
G286522 NA other upstream 1083048 64969549 ~ 64970755 (-)
G286580 marco other upstream 1127758 65014259 ~ 65029736 (-)
G286638 NA other upstream 1168199 65054700 ~ 65075985 (-)
G286953 LOC107579696 other upstream 1348679 65235180 ~ 65235908 (-)
G286985 LOC106586592 other upstream 1411706 65298207 ~ 65300417 (-)

Expression


Co-expression Network