LOC118944562 (LOC106562846)


Basic Information

Item Value
gene id LOC118944562
gene name LOC106562846
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63888258 ~ 63889211 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039920.1
GCCCTTCTTTACCAGACAGCGCACTACTCTCAATGAAACATTCCTGCTGCACCACCAGTTCACAGCTGCACAGACACAGAACAGCGTTGCCACAAGCCAAGAACACTTGGTGTGAAGCCAGGTCCGGTTGATGGGATAGAGTTCCGTAAACCAACTAACTCGTGTGCTGATGGAATAAGAAGTTCTCTCTACAAAGCACTCAATGGATACATGCCTGACATGGACCTTCTCCGCGTCTCAGAAACGTATGCCAACTTTTCTCCACTTACTGCCACTCTTGTGATAACAATGGAAATGTCAGCTGACGTGCCCCTGGTTGAGTCCGCCTTTGGGCCAGTGTAAGCCGGCAGTGTTCTGTCCTATCAGCTTCCACAGCCAAAGACCCGTGAAATTGTGAAGATTGCCGATGTCACTTATCCACCAATACTTCTATTAGATGGCTACAGGCTTCAGGCTTCCCAGTGTGCTTACGTCCTTAGCCATCAGGCGCAGTTCCAGGTCAAGGCATTAGAGACAACCTACGAGATGTCACACAAAGTCAAGGTTGCTACAAGGGAGCAGAGCAGCAGCCCGGAATGGCATCAGCTCAGGAAAATGAGAATAACATCATCTCGCTTCCAAGAGGTTTGCCATGTCCG

Function

NR:

description
PREDICTED: uncharacterized protein LOC106562846

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039920.1 True 638 mRNA 0.50 3 63888258 63889211

Neighbor

gene id symbol gene type direction distance location
gtf2f2b LOC105016382 coding upstream 206016 63625840 ~ 63682242 (+)
serp2 NA coding upstream 362488 63519786 ~ 63525770 (+)
lacc1 lacc1 coding upstream 430687 63414756 ~ 63457571 (+)
LOC110520367 tnfsf11 coding upstream 653601 63225253 ~ 63234657 (+)
LOC110520366 akap11 coding upstream 683663 63173236 ~ 63204595 (+)
LOC110504443 fbxo47 coding downstream 5454 63894665 ~ 63900193 (+)
LOC110520383 LOC106586541 coding downstream 83468 63972679 ~ 63974476 (+)
LOC110520382 LOC106586539 coding downstream 491380 64380591 ~ 64382791 (+)
zgc:152951 glrx coding downstream 965529 64854740 ~ 64861974 (+)
insig2 LOC104950207 coding downstream 1019435 64908646 ~ 64914396 (+)
G285001 NA non-coding upstream 142765 63743006 ~ 63745493 (+)
G284963 NA non-coding upstream 153849 63729710 ~ 63734409 (+)
G284986 LOC106586530 non-coding upstream 166194 63706568 ~ 63722064 (+)
G284975 NA non-coding upstream 168046 63675231 ~ 63720212 (+)
G284968 kctd4 non-coding upstream 226823 63648938 ~ 63661435 (+)
G285103 NA non-coding downstream 12358 63901569 ~ 63902513 (+)
G285155 NA non-coding downstream 102922 63992133 ~ 63992935 (+)
G285172 NA non-coding downstream 140095 64029306 ~ 64070900 (+)
G285173 NA non-coding downstream 141458 64030669 ~ 64071984 (+)
G285195 NA non-coding downstream 172410 64061621 ~ 64075517 (+)
G284599 NA other upstream 496974 63390931 ~ 63391284 (+)
G284537 NA other upstream 575864 63267119 ~ 63312394 (+)
LOC110520364 LOC106586514 other upstream 759300 63124380 ~ 63129015 (+)
G285203 NA other downstream 182221 64071432 ~ 64083982 (+)
G285763 NA other downstream 417301 64306512 ~ 64307360 (+)
G286679 NA other downstream 1220045 65109256 ~ 65109637 (+)
LOC110520396 LOC100136409 other downstream 1272180 65161342 ~ 65166580 (+)
zmym2 LOC106586592 other downstream 1371234 65260200 ~ 65311166 (+)

Expression


Co-expression Network