LOC110504443 (fbxo47)


Basic Information

Item Value
gene id LOC110504443
gene name fbxo47
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63894665 ~ 63900193 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021583204.2
CAAGTCTGTCTGTAGTCCTACCTCAGCCTCAGGGGACGTTTCTTCTCAGCAGCTAGCTATCCAAAATATTCACTTTATAGTCTATGATAAATAAGAACAGTATAAGTCTGAAGACAGCTCACAAGTTTACTCAGTGTATGCTATTGTTGGATTCGTTTTCGCATCCAAAAGCTAAAGTTTATCCTCGGGTCAATAGCGGCCGGACAGTTTTGTGGCGATGGCGACAGTCGCCAGGAAATTCACCATGACCCAGAAGTTCCACCGCCGACGGTCCCGTCGCCAGCCCTATCCGGTGAGAACCATCACGACCCGGAGTCAGGGCATGGCCAGTGGCTGCTTCTTCGAGAGGCTGCCTGCAGAGGTCTTTGACATGGTCCTGGACAGACTCTCTGTGCTTGAGATCAGTGTATTCAGCATGGTGTCCAAGGCCATCAGTCGCTACATTGTGAATCACatctctactcagacctggagaaACAGAATGATCCTACAGAAGCTCCGGCactgctcctctccctcctctcctcctcccaaaGAGGACCCCGCCACCCTGGGACACTACAAAGCGCTGGGGTTGTTGTTCAAGAGGTGTACCCTGTTGCTACCTACAAAGGACAGGTTGAAGTTTATATATAGCAAGTTCTCCCAGgTCCCGTGCTTCATGATGGAGCAGTGCACTGCCTCAACAGGCTGCCCTTTCTTCTCCAGCTACGGAGTTTTCTTGCAGACATTGATTGCGGGCTGGGATGAGCTGGAGTGTCACCGGGTCTTCAACTTCCTGTGTGACTTCACAAACCTTCCCCGGAAGATCGAGTTGGTCGTCACTGGAAAGCCAGGAGCATGTCAGCGGTTGGAGCTGCAGATCCGTGCGTTCTGTCGTCAGGTTCTGTTGGAGCCGTGGAGCAGCCGAAGAGACACTCTGTTCTGGCTCACCAGGATCCTCCAGTCCTGGCCCATGGTCTCACAGGCCAGGCTACTGTTCATACTCTATGGACCACGGCTGCCTGACGGTTCTCTGGGCTGGCAGGAGCAGCTGGGTGCAGGAGTAGCCCAGTGTTCTCTGTGGGACTTGGCCAAGGCTGTGATCCTGCTCCACAGTGACCTGGAGGCTAGAGACTGGACCACTGACACCGTACTGGCCATACTGGAGGAactcacagTGCTCCCCCAGGCGTGGCATGTAGAGAGCGTGGCCAGGCTGTTGATCCTGTGTGGGAACAGTCTGTGTTACAGTATTCTGGCTAGCAAGGCTCTCAACGGACGCCTCTTTGAGATCTCACGACTCCTCGTCTACCTCATACTGGTGTGTGAGAAGGACGGCTACTGTATGAACTGGTCGGTGAGGATGGTGCAGCAGGTGTGCCAGGTGTTCTTGTCGCCGTCAGACAGGTGGTCATTCATCCAGAgcgttgagaacatgttctcagagGTTACCATGGAGATGTACGAGGTTGTCGTGGCAGgtAACCGTCATGAGGACATGGAGACCTTCCAGTGCCTCCTGAATGCCAGCGCTCACTTCCACACTGAGATAGTCTACATGTTCCTCAAGAAGGCTTGAGGACAGAGAAAGGAAAGTCAGGGGCTGAAGAGATAAAGGGgtgaggagatagaagaaaaggAGAGAGTAGGGACACTGTCAGGGAAATGATGATCTGAAGGTTTGTGTTTGAGCAGATAGAGGGATATAAAAGGAGTGAAGGTAGCCCAAGACGATAGGGAAAATTAAGGGTTTCTTCTCCCTTTGTCAACAGTATTCACATCATTACACTTTTATACTTTTGTTATACAGCTTATTTATACTTTTGTAAATGAACCTCTTTAAAATATTGGTATCCTGTAAAGGGAGTATTTAATTATATTTATAGATTTATTAACCTAAGTTTGCAACTATTTATTAGCATTTCATAAAGGTGTTCAACTTCTACAGTATAACGGTTATGATGCATTGATTGTACTTGATGCTTCTGTGTTGATGGAAGCTGAAACTCATCTGTTTTTGCATAAATTATTAAAATGGAATTTGGGGTC

Function

symbol description
fbxo47 Orthologous to human FBXO47 (F-box protein 47).

NR:

description
F-box only protein 47

GO: NA

KEGG:

id description
K10321 FBXO47; F-box protein 47

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021583204.2 True 2031 mRNA 0.49 11 63894665 63900193

Neighbor

gene id symbol gene type direction distance location
LOC118944562 LOC106562846 coding upstream 5454 63888258 ~ 63889211 (+)
gtf2f2b LOC105016382 coding upstream 212423 63625840 ~ 63682242 (+)
serp2 NA coding upstream 368895 63519786 ~ 63525770 (+)
lacc1 lacc1 coding upstream 437094 63414756 ~ 63457571 (+)
LOC110520367 tnfsf11 coding upstream 660008 63225253 ~ 63234657 (+)
LOC110520383 LOC106586541 coding downstream 72486 63972679 ~ 63974476 (+)
LOC110520382 LOC106586539 coding downstream 480398 64380591 ~ 64382791 (+)
zgc:152951 glrx coding downstream 954547 64854740 ~ 64861974 (+)
insig2 LOC104950207 coding downstream 1008453 64908646 ~ 64914396 (+)
marco marco coding downstream 1114098 65014291 ~ 65029795 (+)
G285001 NA non-coding upstream 149172 63743006 ~ 63745493 (+)
G284963 NA non-coding upstream 160256 63729710 ~ 63734409 (+)
G284986 LOC106586530 non-coding upstream 172601 63706568 ~ 63722064 (+)
G284975 NA non-coding upstream 174453 63675231 ~ 63720212 (+)
G284968 kctd4 non-coding upstream 233230 63648938 ~ 63661435 (+)
G285103 NA non-coding downstream 1376 63901569 ~ 63902513 (+)
G285155 NA non-coding downstream 91940 63992133 ~ 63992935 (+)
G285172 NA non-coding downstream 129113 64029306 ~ 64070900 (+)
G285173 NA non-coding downstream 130476 64030669 ~ 64071984 (+)
G285195 NA non-coding downstream 161428 64061621 ~ 64075517 (+)
G284599 NA other upstream 503381 63390931 ~ 63391284 (+)
G284537 NA other upstream 582271 63267119 ~ 63312394 (+)
LOC110520364 LOC106586514 other upstream 765707 63124380 ~ 63129015 (+)
G285203 NA other downstream 171239 64071432 ~ 64083982 (+)
G285763 NA other downstream 406319 64306512 ~ 64307360 (+)
G286679 NA other downstream 1209063 65109256 ~ 65109637 (+)
LOC110520396 LOC100136409 other downstream 1261198 65161342 ~ 65166580 (+)
zmym2 LOC106586592 other downstream 1360252 65260200 ~ 65311166 (+)

Expression


Co-expression Network