LOC110505395 (LOC106586542)


Basic Information

Item Value
gene id LOC110505395
gene name LOC106586542
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63901468 ~ 63904218 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964575.1
CTAATAGGCTTATTCCAAGCCAGGACAGCCAGCCTGCTGCTGTTACCTTGTCCTTATATCCACGGCAACATTCTATTTTAATATGTTAAGACTAAATTGCGGCGAGAAATGGTAGAAACGTTCGACGATATCTCGAGGGAGTAGATATCCTGTACCAAATACACTTAACCTTAGGATCAAATGTTTTAAGTGGGACACATGGGCCTGTTAGATAAACTGTCGGGATGGCTGGGGCTGAAGAAGAAAGAAGTGAACGTGTTGTGTTTGGGACTGGACAACAGCGGGAAAACGACCATCATCAACCAACTCAAACCCACTAATCAAAGCTTATTTGGCCCACTCTCAGACGACTGGAAACATGTTAGTCAGGTAAAGACCCAGACACAAGACATTGTCCCAACTATTGGCTTCAACATAGAAAAATTCAAGAGTTCAAGTTTGTCCTTCACAGTGTTTGACATGTCTGGTCAGAGCAGATATAGAAACCTATGGGAACATTACTACAAAGAGAGTCACGCCATCATATTTGTCATCGATAGTGGAGATAAATTACGGATGGTCGTTGCCAAAGAAGAGCTGGATACTCTTCTCAATCACCAAGACATCCGCAGCAGGAGGTTGCCAGTGCTGTTCTTTGCTAATAAGAGTGACCTGAGAGAAGCCATGTCTTTAGTCAAAGTCTCTCAGCTGCTCTGTCTGGAAAACATCAAGGACAAACCCTGGCATATATGTGCCAGTAATGCTGTAAAAGGAGAGGGTCTAATGGAGGGGGTGGACTGGCTACAAGAGCAAATTGCACAATCATATCAAAACAATGAAGACTTGATGAAATAAAATGGATGAAATGCTTATGATGAAGGATCGtgatggggagaagagagaggcctCAGTGACTACAACATGGCTCCTCCAACTGGGTGTGTCTTTGGTTATCTGATGTCACTATTTATACGGTGCAAGGGAATCACTTGTTTCCTCTTTCTATTTGTTACTCTGTCATGATGCCTGCTGTATGATACTGTTGTAAAGTGTTGATGTGGAGTGTTGCTGAACAGCTTGTTGCAGTGTAGAAACTACCCTCCgagattgtttgtgtgttattcaGTGTTACAGCACGTGGTGTGTAACTGTGCTGTCTGAATGTGGAAAGATATGATTAATGTATTCTGTTGTAACATTTTTACCCTCTACATTTCTGAGCTGTACTTAATGCTTGTTTTTTTTATGCCATTTAATGTGCTGTGACTGTTTTTCAGAcatactcagcaaaaaaataaatgtcctctca
>XM_036964588.1
CTAATAGGCTTATTCCAAGCCAGGACAGCCAGCCTGCTGCTGTTACCTTGTCCTTATATCCACGGCAACATTCTATTTTAATATGTTAAGACTAAATTGCGGCGAGAAATGGTAGAAACGTTCGACGATATCTCGAGGGAGTAGATATCCTGTACCAAATACACTTAACCTTAGGATCAAATGTTTTAAGTGGGACACATGGGCCTGTTAGATAAACTGTCGGGATGGCTGGGGCTGAAGAAGAAAGAAGTGAACGTGTTGTGTTTGGGACTGGACAACAGCGGGAAAACGACCATCATCAACCAACTCAAACCCACTAATCAAAGCTTATTTGGCCCACTCTCAGACGACTGGAAACATGTTAGTCAGGTAAAGACCCAGACACAAGACATTGTCCCAACTATTGGCTTCAACATAGAAAAATTCAAGAGTTCAAGTTTGTCCTTCACAGTGTTTGACATGTCTGGTCAGAGCAGATATAGAAACCTATGGGAACATTACTACAAAGAGAGTCACGCCATCATATTTGTCATCGATAGTGGAGATAAATTACGGATGGTCGTTGCCAAAGAAGAGCTGGATACTCTTCTCAATCACCAAGACATCCGCAGCAGGAGGTTGCCAGTGCTGTTCTTTGCTAATAAGAGTGACCTGAGAGAAGCCATGTCTTTAGTCAAAGTCTCTCAGCTGCTCTGTCTGGAAAACATCAAGGACAAACCCTGGCATATATGTGCCAGTAATGCTGTAAAAGGAGAGGGTCTAATGGAGGGGGTGGACTGGCTACAAGATCATATCAAAACAATGAAGACTTGATGAAATAAAATGGATGAAATGCTTATGATGAAGGATCGtgatggggagaagagagaggcctCAGTGACTACAACATGGCTCCTCCAACTGGGTGTGTCTTTGGTTATCTGATGTCACTATTTATACGGTGCAAGGGAATCACTTGTTTCCTCTTTCTATTTGTTACTCTGTCATGATGCCTGCTGTATGATACTGTTGTAAAGTGTTGATGTGGAGTGTTGCTGAACAGCTTGTTGCAGTGTAGAAACTACCCTCCgagattgtttgtgtgttattcaGTGTTACAGCACGTGGTGTGTAACTGTGCTGTCTGAATGTGGAAAGATATGATTAATGTATTCTGTTGTAACATTTTTACCCTCTACATTTCTGAGCTGTACTTAATGCTTGTTTTTTTTATGCCATTTAATGTGCTGTGACTGTTTTTCAGAcatactcagcaaaaaaataaatgtcctctca
>XM_036964595.1
CTAATAGGCTTATTCCAAGCCAGGACAGCCAGCCTGCTGCTGTTACCTTGTCCTTATATCCACGGCAACATTCTATTTTAATATGTTAAGACTAAATTGCGGCGAGAAATGGTAGAAACGTTCGACGATATCTCGAGGGAGTAGATATCCTGTACCAAATACACTTAACCTTAGGATCAAATGTTTTAAGTGGGACACATGGGCCTGTTAGATAAACTGTCGGGATGGCTGGGGCTGAAGAAGAAAGAAGTGAACGTGTTGTGTTTGGGACTGGACAACAGCGGGAAAACGACCATCATCAACCAACTCAAACCCACTAATCAAAGCTTATTTGGCCCACTCTCAGACGACTGGAAACATGTTAGTCAGACCCAGACACAAGACATTGTCCCAACTATTGGCTTCAACATAGAAAAATTCAAGAGTTCAAGTTTGTCCTTCACAGTGTTTGACATGTCTGGTCAGAGCAGATATAGAAACCTATGGGAACATTACTACAAAGAGAGTCACGCCATCATATTTGTCATCGATAGTGGAGATAAATTACGGATGGTCGTTGCCAAAGAAGAGCTGGATACTCTTCTCAATCACCAAGACATCCGCAGCAGGAGGTTGCCAGTGCTGTTCTTTGCTAATAAGAGTGACCTGAGAGAAGCCATGTCTTTAGTCAAAGTCTCTCAGCTGCTCTGTCTGGAAAACATCAAGGACAAACCCTGGCATATATGTGCCAGTAATGCTGTAAAAGGAGAGGGTCTAATGGAGGGGGTGGACTGGCTACAAGATCATATCAAAACAATGAAGACTTGATGAAATAAAATGGATGAAATGCTTATGATGAAGGATCGtgatggggagaagagagaggcctCAGTGACTACAACATGGCTCCTCCAACTGGGTGTGTCTTTGGTTATCTGATGTCACTATTTATACGGTGCAAGGGAATCACTTGTTTCCTCTTTCTATTTGTTACTCTGTCATGATGCCTGCTGTATGATACTGTTGTAAAGTGTTGATGTGGAGTGTTGCTGAACAGCTTGTTGCAGTGTAGAAACTACCCTCCgagattgtttgtgtgttattcaGTGTTACAGCACGTGGTGTGTAACTGTGCTGTCTGAATGTGGAAAGATATGATTAATGTATTCTGTTGTAACATTTTTACCCTCTACATTTCTGAGCTGTACTTAATGCTTGTTTTTTTTATGCCATTTAATGTGCTGTGACTGTTTTTCAGAcatactcagcaaaaaaataaatgtcctctca
>XM_036964580.1
TCTAATAGGCTTATTCCAAGCCAGGACAGCCAGCCTGCTGCTGTTACCTTGTCCTTATATCCACGGCAACATTCTATTTTAATATGTTAAGACTAAATTGCGGCGAGAAATGGTAGAAACGTTCGACGATATCTCGAGGGAGTAGATATCCTGTACCAAATACACTTAACCTTAGGATCAAATGTTTTAAGTGGGACACATGGGCCTGTTAGATAAACTGTCGGGATGGCTGGGGCTGAAGAAGAAAGAAGTGAACGTGTTGTGTTTGGGACTGGACAACAGCGGGAAAACGACCATCATCAACCAACTCAAACCCACTAATCAAAGCTTATTTGGCCCACTCTCAGACGACTGGAAACATGTTAGTCAGACCCAGACACAAGACATTGTCCCAACTATTGGCTTCAACATAGAAAAATTCAAGAGTTCAAGTTTGTCCTTCACAGTGTTTGACATGTCTGGTCAGAGCAGATATAGAAACCTATGGGAACATTACTACAAAGAGAGTCACGCCATCATATTTGTCATCGATAGTGGAGATAAATTACGGATGGTCGTTGCCAAAGAAGAGCTGGATACTCTTCTCAATCACCAAGACATCCGCAGCAGGAGGTTGCCAGTGCTGTTCTTTGCTAATAAGAGTGACCTGAGAGAAGCCATGTCTTTAGTCAAAGTCTCTCAGCTGCTCTGTCTGGAAAACATCAAGGACAAACCCTGGCATATATGTGCCAGTAATGCTGTAAAAGGAGAGGGTCTAATGGAGGGGGTGGACTGGCTACAAGAGCAAATTGCACAATCATATCAAAACAATGAAGACTTGATGAAATAAAATGGATGAAATGCTTATGATGAAGGATCGtgatggggagaagagagaggcctCAGTGACTACAACATGGCTCCTCCAACTGGGTGTGTCTTTGGTTATCTGATGTCACTATTTATACGGTGCAAGGGAATCACTTGTTTCCTCTTTCTATTTGTTACTCTGTCATGATGCCTGCTGTATGATACTGTTGTAAAGTGTTGATGTGGAGTGTTGCTGAACAGCTTGTTGCAGTGTAGAAACTACCCTCCgagattgtttgtgtgttattcaGTGTTACAGCACGTGGTGTGTAACTGTGCTGTCTGAATGTGGAAAGATATGATTAATGTATTCTGTTGTAACATTTTTACCCTCTACATTTCTGAGCTGTACTTAATGCTTGTTTTTTTTATGCCATTTAATGTGCTGTGACTGTTTTTCAGAcatactcagcaaaaaaataaatgtcctctca
>XM_036964596.1
TCACTCTAATAGGCTTATTCCAAGCCAGGACAGCCAGCCTGCTGCTGTTACCTTGTCCTTATATCCACGGCAACATTCTATTTTAATATGTTAAGACTAAATTGCGGCGAGAAATGGTAGAAACGTTCGACGATATCTCGAGGGAGTAGATATCCTGTACCAAATACACTTAACCTTAGGATCAAATGTTTTAAGTGGGACACATGGGCCTGTTAGATAAACTGTCGGGATGGCTGGGGCTGAAGAAGAAAGAAGTGAACGTGTTGTGTTTGGGACTGGACAACAGCGGGAAAACGACCATCATCAACCAACTCAAACCCACTAATACCCAGACACAAGACATTGTCCCAACTATTGGCTTCAACATAGAAAAATTCAAGAGTTCAAGTTTGTCCTTCACAGTGTTTGACATGTCTGGTCAGAGCAGATATAGAAACCTATGGGAACATTACTACAAAGAGAGTCACGCCATCATATTTGTCATCGATAGTGGAGATAAATTACGGATGGTCGTTGCCAAAGAAGAGCTGGATACTCTTCTCAATCACCAAGACATCCGCAGCAGGAGGTTGCCAGTGCTGTTCTTTGCTAATAAGAGTGACCTGAGAGAAGCCATGTCTTTAGTCAAAGTCTCTCAGCTGCTCTGTCTGGAAAACATCAAGGACAAACCCTGGCATATATGTGCCAGTAATGCTGTAAAAGGAGAGGGTCTAATGGAGGGGGTGGACTGGCTACAAGAGCAAATTGCACAATCATATCAAAACAATGAAGACTTGATGAAATAAAATGGATGAAATGCTTATGATGAAGGATCGtgatggggagaagagagaggcctCAGTGACTACAACATGGCTCCTCCAACTGGGTGTGTCTTTGGTTATCTGATGTCACTATTTATACGGTGCAAGGGAATCACTTGTTTCCTCTTTCTATTTGTTACTCTGTCATGATGCCTGCTGTATGATACTGTTGTAAAGTGTTGATGTGGAGTGTTGCTGAACAGCTTGTTGCAGTGTAGAAACTACCCTCCgagattgtttgtgtgttattcaGTGTTACAGCACGTGGTGTGTAACTGTGCTGTCTGAATGTGGAAAGATATGATTAATGTATTCTGTTGTAACATTTTTACCCTCTACATTTCTGAGCTGTACTTAATGCTTGTTTTTTTTATGCCATTTAATGTGCTGTGACTGTTTTTCAGAcatactcagcaaaaaaataaatgtcctctca
>XM_036964597.1
TCACTCTAATAGGCTTATTCCAAGCCAGGACAGCCAGCCTGCTGCTGTTACCTTGTCCTTATATCCACGGCAACATTCTATTTTAATATGTTAAGACTAAATTGCGGCGAGAAATGGTAGAAACGTTCGACGATATCTCGAGGGAGTAGATATCCTGTACCAAATACACTTAACCTTAGGATCAAATGTTTTAAGTGGGACACATGGGCCTGTTAGATAAACTGTCGGGATGGCTGGGGCTGAAGAAGAAAGAAGTGAACGTGTTGTGTTTGGGACTGGACAACAGCGGGAAAACGACCATCATCAACCAACTCAAACCCACTAATACCCAGACACAAGACATTGTCCCAACTATTGGCTTCAACATAGAAAAATTCAAGAGTTCAAGTTTGTCCTTCACAGTGTTTGACATGTCTGGTCAGAGCAGATATAGAAACCTATGGGAACATTACTACAAAGAGAGTCACGCCATCATATTTGTCATCGATAGTGGAGATAAATTACGGATGGTCGTTGCCAAAGAAGAGCTGGATACTCTTCTCAATCACCAAGACATCCGCAGCAGGAGGTTGCCAGTGCTGTTCTTTGCTAATAAGAGTGACCTGAGAGAAGCCATGTCTTTAGTCAAAGTCTCTCAGCTGCTCTGTCTGGAAAACATCAAGGACAAACCCTGGCATATATGTGCCAGTAATGCTGTAAAAGGAGAGGGTCTAATGGAGGGGGTGGACTGGCTACAAGATCATATCAAAACAATGAAGACTTGATGAAATAAAATGGATGAAATGCTTATGATGAAGGATCGtgatggggagaagagagaggcctCAGTGACTACAACATGGCTCCTCCAACTGGGTGTGTCTTTGGTTATCTGATGTCACTATTTATACGGTGCAAGGGAATCACTTGTTTCCTCTTTCTATTTGTTACTCTGTCATGATGCCTGCTGTATGATACTGTTGTAAAGTGTTGATGTGGAGTGTTGCTGAACAGCTTGTTGCAGTGTAGAAACTACCCTCCgagattgtttgtgtgttattcaGTGTTACAGCACGTGGTGTGTAACTGTGCTGTCTGAATGTGGAAAGATATGATTAATGTATTCTGTTGTAACATTTTTACCCTCTACATTTCTGAGCTGTACTTAATGCTTGTTTTTTTTATGCCATTTAATGTGCTGTGACTGTTTTTCAGAcatactcagcaaaaaaataaatgtcctctca

Function

NR:

description
PREDICTED: ADP-ribosylation factor-like protein 6 isoform X6

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07951 ARL6, BBS3; ADP-ribosylation factor-like protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964575.1 False 1288 mRNA 0.42 9 63901468 63904213
XM_036964588.1 False 1275 mRNA 0.42 8 63901468 63904213
XM_036964595.1 False 1269 mRNA 0.42 8 63901468 63904213
XM_036964580.1 False 1283 mRNA 0.42 9 63901468 63904214
XM_036964596.1 False 1239 mRNA 0.42 8 63901468 63904218
XM_036964597.1 True 1226 mRNA 0.42 7 63901468 63904218

Neighbor

gene id symbol gene type direction distance location
LOC110505387 LOC106586543 coding downstream 14967 63881857 ~ 63886501 (-)
LOC110520378 LOC106586545 coding downstream 25730 63867161 ~ 63875738 (-)
LOC110520377 LOC106586531 coding downstream 78873 63780997 ~ 63822595 (-)
LOC110520376 LOC106582183 coding downstream 121901 63742998 ~ 63779567 (-)
LOC110520375 LOC106586530 coding downstream 158858 63720994 ~ 63742610 (-)
LOC110520380 LOC106586540 coding upstream 7781 63911999 ~ 64174276 (-)
LOC110520379 NA coding upstream 581571 64485789 ~ 64641565 (-)
LOC110520388 cssa25h3orf38 coding upstream 948285 64852503 ~ 64855851 (-)
LOC110520386 LOC106586581 coding upstream 957808 64862026 ~ 64890987 (-)
LOC118944694 ccdc93 coding upstream 980120 64884338 ~ 64895983 (-)
G285338 NA non-coding downstream 241046 63648216 ~ 63660422 (-)
G285277 NA non-coding downstream 379451 63521727 ~ 63522017 (-)
G284861 NA non-coding downstream 393674 63507586 ~ 63507794 (-)
G284855 NA non-coding downstream 401898 63499271 ~ 63499570 (-)
G285444 NA non-coding upstream 47239 63951457 ~ 63953643 (-)
G285445 NA non-coding upstream 51192 63955410 ~ 63955880 (-)
G285466 NA non-coding upstream 87896 63992114 ~ 63992941 (-)
G285582 NA non-coding upstream 270669 64174887 ~ 64175108 (-)
G285624 NA non-coding upstream 306868 64211086 ~ 64211389 (-)
G284018 NA other downstream 1186291 62714575 ~ 62715177 (-)
G277749 LOC106586429 other downstream 6312285 57584386 ~ 57589183 (-)
G277673 LOC106586423 other downstream 6497893 57402984 ~ 57403575 (-)
si:dkey-91i10.3 LOC106586420 other downstream 6603706 57270782 ~ 57297762 (-)
G275250 NA other downstream 8489981 55410143 ~ 55411487 (-)
G286522 NA other upstream 1065331 64969549 ~ 64970755 (-)
G286580 marco other upstream 1110041 65014259 ~ 65029736 (-)
G286638 NA other upstream 1150482 65054700 ~ 65075985 (-)
G286953 LOC107579696 other upstream 1330962 65235180 ~ 65235908 (-)
G286985 LOC106586592 other upstream 1393989 65298207 ~ 65300417 (-)

Expression


Co-expression Network