LOC110520380 (LOC106586540)


Basic Information

Item Value
gene id LOC110520380
gene name LOC106586540
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63911999 ~ 64174276 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974914.1
GATGCGCTCTGTCTCGCCGTTCTGTAGCTGTACTCTGTCGTTAACGGGAGTtgtacagttctctgctgcagcAGTCAGTCCTGGCTTGCATCGAACCGGCTACAGTGGCACTACGCTCGCTCAGACCAACCAAACAACTGATACCGCGCCACTTGGAGTTTGGAACTGTATGTCACGAGTCGCATCCTGGCGTCTTCCATTTCCCGCGTGAAGGAATCACGAATACGCTTAGCTGAAACCAGGAGGAAATAAAATAGCGCACCCGAGGAGGAATGTTTGATTAGATTTCTTGTCAAAACAGTGAAATACAGGAAGGTCCGATACGGAGCGCAACGAATTTTGTCTTTGAGCATCGCTCTAGAAATGCGTTCGCTGAGGGTAAATGTCGTCTTGATGTTTGTTTTTGCCGCGGTGTGAACTTCACTAACCTTCCTAAGCATTCCGCCGGATCATGCGATGGATCTCCTCCAGTAGCCTATATTTGTCTGTCAGCTCTCTCCAGCGGGGACTGGGTGCGAGGAGGGtccggggagaggagagacacccaCGGCTCCACTTGGGATCTAAAGGCACTGTGTGACCAGGTTTCTTCTTCTGGATAGTCCCCTGCTCGGCGCGGTGCTGGGCAGCCTGTGGATGGTACAGAAATGACTTTAGGAGAAAAACTCTGCTTCGTTTTCCTATTTTTTAGGATTTTCTTCACTCCTACCAGCCACGGCAATCAAGTGGTACTGCTGGACACCACCTCTGTTTTGGGAGAGCTGGGATGGAATACCTATCCCATGAATGGgtgggATGCTATAACAGAGATGGATGAACACAACCGTCCCATCCATACCTTCCAGGTGTGTCACGTGATGGAACCCAACCAGAACAACTGGCTACGCTCCAATTGGATCTTCCGCCAGGCAGCACAGAAGGTGTACGTGGAGCTGCGGTTCACTCTGAGAGACTGTAACTCCATCCCCTGGGTATCTGGGACCTGCAAGGAGACCTTCAACCTTTTCTACTATGAGACAGACGAGTCCCACGGGGTCAAGTTCAAACCCGCCCAGTACACCAAGATCGACACCATTGCAGCCGACGAGAGCTTCACCCAGATGGACCTGGGAGACCGCATTCTGAAGCTCAACACTGAGGTTCGGGAAGTGGGTCCTATCTCCAGGAAGGGTTTCTACCTGGCGTTCCAGGACATTGGGGCGTGCATCGCCCTGGTCTCAGTCAGGGTGTACTATAAGAAGTGTCCCTTCACCATGAGGAACCTGGCCTCCTTCCCTGACACCGTGCCCCGGGTCGACTCCTCCTCCCTGGTGGAGgtcaggggagtgtgtgtggagCATGCCGAGGAGAGGGACACTCCCAAACTGTACTGCGGCGCCGACGGTGACTGGCTGGTGCCTTTGGGGAAGTGTGTCTGTAGCCTGGGCTATGAAGAGATGGACGGGGCATGTCTCGcgtGTCGACCAGGCTTCTACAAGGCGTTTGCGGGGAACATCAAGTGTTCTAAGTGTCCCCCTCAAAGTTTCAGCTATGGAGAGGGGGCTGCTGTCTGCCACTGTGAGAAGGCTTTCTACAGAGCTGCGAGAGACCCACCCACTATGGCCTGCACACgtcctccctcccctcctcgtAACGTGGTCTTCAACCTTAATGACACCTGTCTACTGTTAGAGTGGTCTCCACCCAGTGACATGGGTGGTCGCAGGGACCTGACCTATAACGTGCTGTGTAAACGCTGTGGCCCAGAGCCCGACCAATGCCAGCTGTGTGGGGAGGAGCTTCGCTTTGTGCCCCGCCCCCAGGGCCTGACCAACGCTATGGTAACAGTGATGGACTTCTCGGCTCACGCCAACTACACCTTCGAGATCGAGTCGCTGAACGGAGTGTCTGAGATGAGCCACTTCCCGAGACCTGTGGCCGCCATCACTGTCTCCACCGACCAGGGCGGTCCCTTTATGGTGGGCATGTTGAAGAAGGACTGGGCATCTCAAAACAGCATTGCCCTGTCGTGGCTGGAGCCAGAACAGACCTCCCTCCTGGTGGTCGACTATGAGGTCAAGTACTACGAGAAGGAACATGAGGAGTTGAGCTACTCGTCGACGCGGACCAAAGCCCCCAGTGTGGTCATCACAGGGTTAAAGCCCTCCACCTGCTACGTCTTCAGCCTGAGAACACGCACCTCCTCTGGACACAGCGCCTACAGCCCCAAATGCGAGTATGAGACCACGGACGACACGTCGGACATGGCTTCAGACCAGGGTCAAGTGTTGGTGATCGTTACGGCAGCCGTGGGCGGCTTCActctcctcatcatcctcacccTCTTCTTCCTCATCACCGGACGgtgtcagTGGTACATCAAATCCAAGATGAgctcagaggagaagaggaggaccaactATCAGAGTGGACATGCTCTCCCGTTCCCGGGAGTAAAGGCCTATGTAGATCCAGACACCTATGAGGATCCTACCCAGGCTGTCCATGAGTTTGCCAAAGAGATTGACCCGACCCGGATCCGTATAGAAAGAGTTATTGGAGCAGGTGAGTTCGGGGAGGTGTGTAGCGGTCGTCTGCGGATACCAGGGAAGAGGGAGATTGCCGTGGCGATAAAGACACTGAAGGGCGGCTACGTGGAGCGCCAGAGGCGGGACTTCCTCCGTGAGGCCAGCATCATGGGACAGTTTGACCACCCAAACATCATCAGGCTGGAGGGCGTGGTCACCAAAAGCAGACCTGTGATGATTGTGGTGGAGTACATGGAGAATGGATCTCTGGACTCTTTCCTGAGGACGCATGATGGCCAATTTACAGTGATCCAGTTGGTGGGCATGCTGCGTGGCATTGCGTCGGGCATGAAGTACCTGTCTGACATGGGCTACGTCCACAGAGACCTGGCCGCCCGCAACATTCTGGTCAACAGCAACCTGGTGTGTAAGGTGTCTGACTTCGGCCTGTCCAGAGTCCTGGAGGACGACCCCGAGGCTGCTTACACCACCACGGGAGGTAAGATCCCTATCAGGTGGACAGCTCCAGAGGCCATCTCCTACAGGAAGTTCTCATCAGCCAGCGATGCCTGGAGCTACGGAATCGTCATGTGGGAAGTGATGTCATACGGGGAGCGGCCTTACTGGGAGATGTCCAATCAGGACGTGATCCTGTCCATAGAGGAGGGCTACCGTCTCCCTGCTCCTATGGGCTGCCCCGTGGTTCTACACCAGCTGATGCTACACTGCTGGCAGAAGGAGAGGAGCCAGAGGCCCAAGTTCACTGATGTGGTCTCCTTCCTGGATAAGCTGATCAGGAACCCCAGCAGCCTGCTGGCCCTGGTGGAAGATATACAGGGTCTAGCAGAGTCCCCAGGAGAGGTGGTGGACTACCACATGTTCATCTCCATCGGGGATTGGCTGGATTCCATCAAGATGAGCCAATACAAGAGCAGCTTTGTGGCAGCAGGATTCAGCACACTGGACTCTGTGGCCCAGATGAGCATTGAagACGTGCGGAGGACCGGGGTGGTGTTGATTGGCCACCAGAGGAGGATCGTCAGCAGCATACAGACCCTCCGACTGCAGCTACTACACCAACAGGAGAAGGGCTTCCATGTATGAGACCTTagaacagacagacggacagacagccaCAGCCTGTGCCTCAGTCTTcacccctcagacagacagacagacaaacagacagaccgtCTCAGCCTGGAGGCCTCTCTCAGACAGACTACCACACATTTGGACCTCAATGCAGAACCTCAATAAAGCCAGACTGTTTTGTACACCTGAACGTGCTTCAGCCAGAGACAGAACAGCAGAGACAGGACTCTGAGAGACACACTGCCCCTGGCTCCCCCTGGGGAGTGTATGCCTTGTTGCAGCATCACTACTTATTATACAGTAGAACTGTAGACTGGGGAGTGTATGCCTTGTTGCAGCATCACTACTTATTATACAGTAGAGCTGTAGACTTGGGAATGTACATTTTCTCTCCATGTTTTTGTGACCATGATGTAGCTGCTAACAGATGAGCAATCAAAAGGATTGTCCTTAAATAATATGATGTGAATTATTTTGGAGTTTGATAAGTAAGCGTCATCACAAGGTATTCTTGTTACATTATTTAACCTCTCCAGAGTATCTGGGTATGCTAATACTTGAAGAAAACGAAGAGACAGTTTTTGAAGTGCAGAGGATTTCTGAATGTTTTAAGTGTATAGACAATTTATCGATTATAATCCTAAACTAATATTTATATATGTGCAGTCCTGTATGTGAGCGCCCTAGTAAATCTGGATGTTATCTCTTTATTTACCATTTTTTCGAAATCAGCAATATATGCAGTCGTCTCAGTAACTAAGATaagagaaataaataaatgatactCTCTTATGGACCTACAGACATTGAGAGCAGATTGTCAGCAAACCTCAACAGACTGTGTAACATGCTAACATGCCAACTACACAGGGCGGTTGTGCAATGCTAAAGACTTATGGAAGTTGTTGGAaaacaatgtacagtatgtagtatgAGGGGGACTCAAGGCTGTTGGACATACAGTAGTTGGTTTCATTATGTGTTTTTTGTGGTCAAGACCCACGTGTATTccaagatagagagagacagaggtatgtTCTGCAGGTTgacagacacatagagacagCAACACCAGAGTAATATCTCTTTGTCTCTAGAAGGCCCTCAACAGCATTATAATAACCCATGAGCCTCTCCAGATCCACACTAACACAGGTGGTTCGGTGAACCACAAAAAACATATGCCTGAAACTTGAAGACTTGCGTTAGCTAATGCTTAGGCTTTAACTCGGCAGGCTAACATAGTCTTGTGGAGCACAGACGACCCAGGTTCAAACCCagtcggtcacacacacacacctacaatatGTTCTGGATGTTCAGTATGTTCTGGAGCAGGAGTGTACCTGAGGAGCCTGTAcggcagtggaggctggtgggaggagctataggaggacaggctcactggaatggtatcaatggaacagtatcaaacatacTTGGAACCACATTTCACTCCATTCCAAaattccattccaaccattacaatgagccagtcctcctataactcctccAACCAGCCTTCACTGTTGTACGAAGTAGGAGGAATTTGCCCCCAgacactgatctaacatcagttTAATATTTTACCCCCTAATGGTTGAGGTAAGAATTGAGGTACgctaagctgatcctagatctgtggttcgGAACAACTTCTAAATGGAGCTCACCTGTCCAGCAGCGGTTCACAGACAGAGCGTTCAGGTGTCCCTCAGAGGggaggacacacacaaacacacacacttccctcctCCTGGAAGGAGAGATTAGATCAGGCTGTTTAGCATGTCTTACTGCTGAGCAACGGGAGAATGCTATTTTGTACAAAGTACAAGTATACTTATAAttcttgtattttatttttctatCATTTCCAGAGAGACGTGGTAGATCTTGCACACTGTAAGACGCAGTTTAAAGCGgatatttatttgcaaataaagaACAGTTCTGGTGG

Function

NR:

description
PREDICTED: ephrin type-A receptor 6-like isoform X1

GO: NA

KEGG:

id description
K05104 EPHA3, HEK, TYRO4; Eph receptor A3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974914.1 True 5562 mRNA 0.51 18 63911999 64174276

Neighbor

gene id symbol gene type direction distance location
LOC110505395 LOC106586542 coding downstream 7781 63901468 ~ 63904218 (-)
LOC110505387 LOC106586543 coding downstream 25498 63881857 ~ 63886501 (-)
LOC110520378 LOC106586545 coding downstream 36261 63867161 ~ 63875738 (-)
LOC110520377 LOC106586531 coding downstream 89404 63780997 ~ 63822595 (-)
LOC110520376 LOC106582183 coding downstream 132432 63742998 ~ 63779567 (-)
LOC110520379 NA coding upstream 311513 64485789 ~ 64641565 (-)
LOC110520388 cssa25h3orf38 coding upstream 678227 64852503 ~ 64855851 (-)
LOC110520386 LOC106586581 coding upstream 687750 64862026 ~ 64890987 (-)
LOC118944694 ccdc93 coding upstream 710062 64884338 ~ 64895983 (-)
en1a en1 coding upstream 813477 64987753 ~ 64995840 (-)
G285338 NA non-coding downstream 251577 63648216 ~ 63660422 (-)
G285277 NA non-coding downstream 389982 63521727 ~ 63522017 (-)
G284861 NA non-coding downstream 404205 63507586 ~ 63507794 (-)
G284855 NA non-coding downstream 412429 63499271 ~ 63499570 (-)
G285582 NA non-coding upstream 611 64174887 ~ 64175108 (-)
G285624 NA non-coding upstream 36810 64211086 ~ 64211389 (-)
G285629 NA non-coding upstream 39754 64214030 ~ 64214339 (-)
G285678 NA non-coding upstream 80357 64254633 ~ 64254876 (-)
G285683 NA non-coding upstream 86739 64261015 ~ 64261242 (-)
G284018 NA other downstream 1196822 62714575 ~ 62715177 (-)
G277749 LOC106586429 other downstream 6322816 57584386 ~ 57589183 (-)
G277673 LOC106586423 other downstream 6508424 57402984 ~ 57403575 (-)
si:dkey-91i10.3 LOC106586420 other downstream 6614237 57270782 ~ 57297762 (-)
G275250 NA other downstream 8500512 55410143 ~ 55411487 (-)
G286522 NA other upstream 795273 64969549 ~ 64970755 (-)
G286580 marco other upstream 839983 65014259 ~ 65029736 (-)
G286638 NA other upstream 880424 65054700 ~ 65075985 (-)
G286953 LOC107579696 other upstream 1060904 65235180 ~ 65235908 (-)
G286985 LOC106586592 other upstream 1123931 65298207 ~ 65300417 (-)

Expression


Co-expression Network