XLOC_021711 (ttpal)


Basic Information

Item Value
gene id XLOC_021711
gene name ttpal
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 25868637 ~ 25874877 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043092
GGCTTCATCCTGTACACGGAACTGATTGCGGATTTCTTTGGCAGCCCATGGCAGACCAAAATGGGCACATTGATCTTGGGCCTCCAAGGGACACAGCTGCAGGTTTAGGCTTCCCAGGTCCTCCTCCACCCATCTACACCTGCACTCTGACTCCTGAACTAGTAGCCAAGGCTCGGGAAGAGCTTCAGGAGAAGCCCGAATGGAGGCTGCGGGATGTCCAGGCATTACGGGATATGATACTGAAAGACCACCCTAATCTGAGGACCCGGTTAGATGATGCTTTTCTGCTGCGCTTCCTCAGGGCCAGGAAGTTTGATTATGACCGGGCCCTTCAGCTTCTCCTGAATTATCATGCCAGCCGGAGAGCCTGGCCTGAAGTGTTCCAGGACCTGAAGCCCTCCACAGTCAAGCACGTCCTAGACCTGGGCTTTCTCACTGTCCTGCCCAGGCCAGACCCTCAAGGACGCTACATACTGTGTTTACGACCAGGCAAATGGAAGCCTAATGATTACCCATTTGTGGACAACATAAGGGCTATTTATTTAACATTAGAGAAGCTGATTCAGCCTGAGGAAACCCAAGTAAATGGAGTCGTTATCCTGGTGGATTATGCTGGAGTTGGCCTCTCTCAAGCTTCTAATCCAGGTCCACTTTTGGCAAAGAAAGTTGTCGGTATCCTGCAGgatGGCTTCCCAATCAGAATAAAAGCTGTAAACATTATAAATGAGCCACGGATCTTCAAGGGTATTTTTGCAATAATCAAACCATTTCTGAAAGAGAAAATGGCAGAAAGGTACGTCCTGCACGGCTCAGACTTGGCCTCTCTCCATCGAGTCATTCCCCAGTCTGTGCTTCCTCAAGAGTATGGAGGAGTATCTGGAAGACTTGACATGTCCGCCTGGTCCAGAACTCTGCTGGAGGCTGAGGAAGAGTTTGTGGTAGAGTTTTGTCAGCCTGATCCTCTGGAGGGCGTCATAATGCCAGACGCCCTGCTGTTTGAGGGTGAGCAAGGTGGCGCACATGGAGAGGACTCCTTCAGACATCTGCGCTCACAGCTTTATTATTGCTACTGACCTTCTACCGATGTGCAGCTGGTTCTGTTGAAACATTTGCTTAGCTATGACCAATTAAGTATTCACAGGTCACCGTATGGGTCTGACTGTGTAATAGATCTGGTATCGAAAGCCATTCAGATGCTGGAAACTTTACGTATATTCATTGCTTTGGCTTAATCGGGTAACTCTGTACTTTAAAATCTGATTTAAATTCATTATCTGAGCTTAATATTAATAGCCATTGAACAAACATCCTAGGTtttaatatatatcatatatatcagtatttattttcagttatgcAGGGAGCATAGAAATGTTAAAATGGATGTTTTTAGCTTTAcataattttgtgttatgtctgAAAAAATGCTTGCCTTATTTTAAGATGAAGGGAAAATGATTAGTATTCATTTAGTTAGTTAATATTTCAGTTAGCACATTGAAAAtaccccaaaaaaagaaaaaagaaaatgctgtcatcattttctcaccctccacttatttcaaacctgtttgagtgactttttttctgttgagcacaaaagaagataagaTGAATAAAGTCTATACTAGAGATGCTCTGATCGATTACTACTCAgtgatctggccgatctcatatACCAATCACAAGTGTTTGTATTAGCTTGAAATGAGTAAATGTTTGAACGACATTGCATGTATTTAGGCTTTTTTACCAATAAGAACTAAAAGaacttctgtgtttttgacaatgttgcaagttcactaaaacctggctgaaaatattgcataaatagaacaaaaaacatatataaatttaacatgaatatttacTAATATACCTTCTCGTAATATTGCagtaaacagtagtttataggcctGTTTCCTTTTAGTAatgatttataggtgtgcattttaattttttgttcatCAAATATGGGCTGCTAACttttttcttgattgagacacgttgaattcttcttttatcatttgcagtgtttccaaatcttattgtttgtcttttttttttttttacatttttttgttttgttttatctattttctgtTGAGCCGCTTCTTTCCATGATATGTTCACACCTATATTGCTGAAAGAGACAtatttaagggattatatgcagcatccttaatttattctcaTAAGTAAGGAGAGATATCCACTTAAGTATACCTCGAGGAAAATTATGCATTATTAAGCTTAAAACATTACAATCGGTACTCGGTATCAGCCGATCACCTCGACAAGGAATCAGCACtcggtatcggctgcaaaaatcctgatcggagcatgcCAATTCCATAgtattgtttttcctactatggttgtcattaactaatgtttccaccattattaaaatatcttcttttgtgttcaatagaaaatgAAGAATCCAAAAAGGTTTAGAACCAGTTGACAAGTAAATTATTTCATCCTAACAGCCCTAAAATGAATTTGTAGTTTTGATGTATTTTACTGTTCGTGATTGTGCAATACTACACTAATTCACGGTTGACTTTTTGTAGATCTTTGTCATAAGCTTTAAAATTAGCGGGACACCAGATAGTTCTTCATTAAGATATTGTGAGCTTATACTTTACATCACAGCTATATAGCATTTTTAAAGTTGAGTGGCCAAATACTcaatgtgtgtttgtatattgtCATTTGCCAAAAACGAATAGACATTAACTTTTAATGTTGTACAGACCCTGTATAGATACctgttttttattatgatttaaaaagtaaaataaaatgaagagatgttatttcatttttatcaaAGCACATTTATGCCTTAGTTTCAAGCCTTACGTTTGGTGTAAGTATTGTAtccatatatattataatttaagtatattttattatttctgtttgtGGAAATGGTCAATAAACACTGTAATTTTCAGAATTAA
>TCONS_00043093
CCCATGGCAGACCAAAATGGGCACATTGATCTTGGGCCTCCAAGGGACACAGCTGCAGGTTTAGGCTTCCCAGGTCCTCCTCCACCCATCTACACCTGCACTCTGACTCCTGAACTAGTAGCCAAGGCTCGGGAAGAGCTTCAGGAGAAGCCCGAATGGAGGCTGCGGGATGTCCAGGCATTACGGGATATGATACTGAAAGACCACCCTAATCTGAGGACCCGGTTAGATGATGCTTTTCTGCTGCGCTTCCTCAGGGCCAGGAAGTTTGATTATGACCGGGCCCTTCAGCTTCTCCTGAATTATCATGCCAGCCGGAGAGCCTGGCCTGAAGTGTTCCAGGACCTGAAGCCCTCCACAGTCAAGCACGTCCTAGACCTGGGCTTTCTCACTGTCCTGCCCAGGCCAGACCCTCAAGGACGCTACATACTGTGTTTACGACCAGGCAAATGGAAGCCTAATGATTACCCATTTGTGGACAACATAAGGGCTATTTATTTAACATTAGAGAAGCTGATTCAGCCTGAGGAAACCCAAGTAAATGGAGTCGTTATCCTGGTGGATTATGCTGGAGTTGGCCTCTCTCAAGCTTCTAATCCAGGTCCACTTTTGGCAAAGAAAGTTGTCGGTATCCTGCAGGTAAATCAATGCAAAACTAGCTCAGCGATTCATTGCATTGAATTTGAGCATCAatctgcttatttttattttgttttaggatGGCTTCCCAATCAGAATAAAAGCTGTAAACATTATAAATGAGCCACGGATCTTCAAGGGTATTTTTGCAATAATCAAACCATTTCTGA

Function

symbol description
ttpal Predicted to enable phosphatidylinositol bisphosphate binding activity. Orthologous to human TTPAL (alpha tocopherol transfer protein like).

GO:

id name namespace
GO:1902936 phosphatidylinositol bisphosphate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-296 Predicted to enable phosphatidylinositol bisphosphate binding activity. Orthologous to human TTPAL (alpha tocopherol transfer protein like).

Ensembl:

ensembl_id ENSDARG00000070644

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043092 False 2972 mRNA 0.38 5 25868637 25874877
TCONS_00043093 True 809 lncRNA 0.48 2 25869374 25871801

Neighbor

gene id symbol gene type direction distance location
XLOC_021710 hnf4a coding upstream 2781 25832689 ~ 25865856 (+)
XLOC_021709 r3hdml coding upstream 41267 25821055 ~ 25827370 (+)
XLOC_021708 rbms2b coding upstream 99872 25708787 ~ 25768765 (+)
XLOC_021707 fmnl3 coding upstream 419765 25354856 ~ 25448872 (+)
XLOC_021706 esyt1a coding upstream 528567 25308018 ~ 25340070 (+)
XLOC_021712 pkig coding downstream 4443 25879320 ~ 25942859 (+)
XLOC_021713 ccn5 coding downstream 118809 25993686 ~ 26003858 (+)
XLOC_021714 AL845287.1 coding downstream 120150 25995027 ~ 25995141 (+)
XLOC_021715 si:dkey-78k11.9 coding downstream 134389 26009266 ~ 26010376 (+)
XLOC_021716 pfkfb1 coding downstream 142350 26017227 ~ 26037969 (+)
XLOC_021691 BX957326.2 non-coding upstream 1307764 24556455 ~ 24560873 (+)
XLOC_021689 NA non-coding upstream 1376600 24483312 ~ 24492037 (+)
XLOC_021687 CR925709.3 non-coding upstream 1719866 24148055 ~ 24148771 (+)
XLOC_021686 NA non-coding upstream 1728227 24133781 ~ 24140410 (+)
XLOC_021683 dre-mir-7149 non-coding upstream 1794482 24074083 ~ 24074155 (+)
XLOC_021722 NA non-coding downstream 716247 26591124 ~ 26625133 (+)
XLOC_021724 CT573349.1 non-coding downstream 1053866 26928743 ~ 26928858 (+)
XLOC_021731 NA non-coding downstream 1633990 27508867 ~ 27516273 (+)
XLOC_021738 NA non-coding downstream 1995862 27870739 ~ 27872705 (+)

Expression


Co-expression Network