LOC110520388 (cssa25h3orf38)


Basic Information

Item Value
gene id LOC110520388
gene name cssa25h3orf38
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 64852503 ~ 64855851 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597673.2
GAGGGATGCCGTGTTTCCTCCCGGACGTTCCCTTTGGTACCCTCGAGTGGTGGATGAAGGAAGTACAACCACAGCCATTGCAGGTGTTTACTGGGTTAAAAGTTGTATACTATCGTTTTAAATATGCCTGTATTGTCCGATACGGAGCGTAAGGGCTGTAAAAATATGTTGGGTATCATGTCAAGGGGCGACATACTTTCGCTTAGCGATACAGTCACCAACAAAATGATTGCAGTGGAAAACATTACAGAAGCAGTTGAGGCCATTCTTTCATACACCAAGGATACGGAGGAGCTGCTAAAACGAAAAAAGGTCCACCGTGACGTTATATTCAAGTACCTGGCAAAGGAGGGGGTGGTGATGCCCCCCAACAGTGAGAAACACCAGCTAGTGAAGCGGACTCTAGAGTTTTGGTCTACTGGGAAGGCATTGGACTATCAAACCCCAGCAGTTGAGACCAGCCTAAGTCTGAGACCAGCTGAGAGTGTCTCTGTTTCCTCTGAGGCAGGGTACAGTCCTGGTTTTGACCACCTGGCCTTGGCCAGACAGTTCTGTCAGTGGTTCTTCCAGCTTCTCAACAGTCAGAACCCCTCCCTGCGCCAGCCTCCTAAGGACTGGGGACCACAACACTTCTGGGAGGACGTCCGTCTGCGCCTCTTCTCCAGtgCTGTTGGCCAACAAATGGAAGAATTCCATGGCTCTGAGCTGACTAGCCTGCGTCTCCTGGCCCTGGCGAGGGACGAGAGGCTCCTGTTGAGCCCCAACCTTGACCCTCCTGGCCTGAAGGTCCTGTCCTCCCCCCACGGCCTGGTGTTGGTGGCTGTGGCAGGGACCATTCACAGAGATGATGTCTGCCTAGGAGTATATGAACAGGTGTTTGGCCTCATCCGCTCACCGCTGGAACAGAACAGCTGGAAGATCAAGTTTGTCAACCTGAAGATCAAGGGGCAGGACGCCCTGGGAGGAGCAGAGGAGCTGGCCTCTCCTGCACTGACCTGCAGCTCCTCTGAACTACAGCTGCTCTGCAGATGAGGGAACTGAGGTTCATCCCAATAGTCTAAAGGGGCTTCCTCTCCTTACTTCCTTTCCTTTATCTGCACTTGTGAAAAACATGGACAGGTGAAAGTAAATTGCCAATGTCACCATCCACCATTTTGTTTTCACCTATCTTGGGTTCTCAGGTCAGTGCAgataaaggagagaagaagagagagacacacttcAGATTATTGAAATTATTGAAATTCACACTTGGTGTCACTAAGAGAAGAGGACTGCTCTGTAGACCATAAGGGAGCAGTGGTTAGAGATGTGCCTGTGAGAATGAAAGACAAACATACATTTCATGGTCTGTTTTCCTCAATACTATATAGTTAGCTATTATTTACTGCTGTATCAAGAAGAAACATGTAACATTTTTGCTATTAATACTATATTCCAGGATATGTTTAGGTTTACTCTCCATGTAATGGGAAAAGTTCTTGGTTGGTGTAGGACTGGGTGGTTTTCACGATTCTTCTGTTCTCTCATTTGAGGCATTTTCCCTTAAATGACCTGTGATCTGTGCCTTATGTAGAATAGTCTATAAGCAGAAGCATGCCTCTATCATCGGTAACGGTATATGGCTAAAACTTTAAGTATATTATATTGTAAATATGTATCATACCAGTACTAAAAATAATTTAAACCTTT

Function

NR:

description
uncharacterized protein C3orf38 homolog isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597673.2 True 1692 mRNA 0.47 4 64852503 64855851

Neighbor

gene id symbol gene type direction distance location
LOC110520379 NA coding downstream 210938 64485789 ~ 64641565 (-)
LOC110520380 LOC106586540 coding downstream 678227 63911999 ~ 64174276 (-)
LOC110505395 LOC106586542 coding downstream 948285 63901468 ~ 63904218 (-)
LOC110505387 LOC106586543 coding downstream 966002 63881857 ~ 63886501 (-)
LOC110520378 LOC106586545 coding downstream 976765 63867161 ~ 63875738 (-)
LOC110520386 LOC106586581 coding upstream 6175 64862026 ~ 64890987 (-)
LOC118944694 ccdc93 coding upstream 28487 64884338 ~ 64895983 (-)
en1a en1 coding upstream 131902 64987753 ~ 64995840 (-)
c1ql2 LOC106586564 coding upstream 250878 65106729 ~ 65108799 (-)
c3h2orf76 cssa25h2orf76 coding upstream 290669 65146520 ~ 65150171 (-)
G286426 NA non-coding downstream 67652 64783433 ~ 64784851 (-)
G286299 NA non-coding downstream 74566 64777664 ~ 64777937 (-)
G286292 NA non-coding downstream 82477 64769797 ~ 64770026 (-)
G286253 NA non-coding downstream 115294 64736919 ~ 64737209 (-)
G286247 NA non-coding downstream 120617 64731677 ~ 64731886 (-)
G286463 NA non-coding upstream 35254 64891105 ~ 64928286 (-)
G286520 NA non-coding upstream 113384 64969235 ~ 64969459 (-)
G286523 NA non-coding upstream 115407 64971258 ~ 64971597 (-)
G286536 NA non-coding upstream 122395 64978246 ~ 64978524 (-)
G284018 NA other downstream 2137326 62714575 ~ 62715177 (-)
G277749 LOC106586429 other downstream 7263320 57584386 ~ 57589183 (-)
G277673 LOC106586423 other downstream 7448928 57402984 ~ 57403575 (-)
si:dkey-91i10.3 LOC106586420 other downstream 7554741 57270782 ~ 57297762 (-)
G275250 NA other downstream 9441016 55410143 ~ 55411487 (-)
G286522 NA other upstream 113698 64969549 ~ 64970755 (-)
G286580 marco other upstream 158408 65014259 ~ 65029736 (-)
G286638 NA other upstream 198849 65054700 ~ 65075985 (-)
G286953 LOC107579696 other upstream 379329 65235180 ~ 65235908 (-)
G286985 LOC106586592 other upstream 442356 65298207 ~ 65300417 (-)

Expression


Co-expression Network