LOC118944694 (ccdc93)


Basic Information

Item Value
gene id LOC118944694
gene name ccdc93
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 64884338 ~ 64895983 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965063.1
cTCAATACTCACTTTATCGACTCCCAAAACACTCGACAGTGGCCGTGTTGCAGTCGGCATCTAAGTGAGGTTAGCTTACTTTTTGTATAAAAATTACAGCTACATCTTGAACGCACAATTTTTCAAGAATTAAGACCAAAGTCATATGCTTTCGTCACACCACAGTCCAACATGGCGGCCACGTCTGTTTTCCACAGAGCGAGAACAGGTTCGAAAATAGGAGCTCAATATGATCAAGAGGGAAATCTTATTCAGGCTGAAACAAGGGAGGACGAGGAGCAGAGTGTCAAGCTAGCAGAAATCCTGGAACTTCTTCTTGCTGCTGGATATTTCAGAGCCCGAATAAAAGGACTGGGACCTTTTGACAAGGAGAATTCAACTATTGGACAGAAAATCGCTCTCACAGAGAAGATTGTGTCTGTTCTGCCCAAAATGAAGTGCCCTTATTGCCAGGAGCCTCATCAGATCCAAGGGCTGGATTTCATCCATATATTTCCAGTGATACAGTGGCTGATGAAGAGGGCCATAGAGAcgagggaggagatgggagactaTGTGAGAGCCTATTCTGTCTCTCAGTTCCAGAAGACACACAGCTTCCCTGAGGATGAAGACTTCCTCCAGAGGAAGGAAAATGCTGTGAAAGATGTATTGGAAGTGTATAAACCTCATAGGAAATACAAGAGACAGGTTGAAGCAGGATCCCTGTTGGACGAGGAGTACAGGGTTCACTCCACTCTATTGGAGTACGGAAGACAGTATGGATTCAGCAAGCAGACAAAACAGGACCAGGCAGAGGACCGGAAAGCCTTGTTGATGCCAGGCTCTCAGGCCACACCCCCAGGGATTACAGAGGGGtcgcaggaggaggaggagtacctGCAGGCAGCGGAGCTGCGCATCAAAACACTGATGCCCAGCATGGCTGCCATGGGGAGGCTAACGGCTAGCACAGTGGGACAGATAGTTGGGCTGCAGTCTGAGGAGATGAAACAGATAGCATCTGAGTATGCTGAGAAGTTGGAGAGGTCTGCAGAGGACCGTCCAGAGTGGTACGGGCCAATCCAGCAGCACCGTAGGATAGTGACCTCTCTGAACAAACAGATCCAACAGAAGACCAAGCAGTTGGAGGAGCTACAAGCCAAACACTTGGGTGTAAAATCAGGGTGTGTGGAAGCTAAGAGCAAACTGTTGGAGGCCACAGAGCAGACCGAGAGACTGGAGAAAGAGCTGAGTGCCCTTGAAGAGGCTGAGGGCCAGGCTGATACTGGACTGTTGGAGAAGCTGAGGGCTCTGGTAGGCATGAATGAGAACCCGAAGCACCAAGAGCAGGAGTTCCAGACACATTGTAGAATGGTTCGCCTGCAGCAGAACATTGAGGACCTGAAGATGGAGTCAGGAGATGATACAGAGGATGAGAAGGAGAGGAGTCAGCTAATCGACAAGCAGtacaacacagacagagataagcTACAGAAGATCAGACTGATGATGGCTTGGAGGAACCGTGAGATCGCCATCCTGCAGAGGAAGATAGACGAGGTGCCGAGCAGGGCAGAACTGAACCAGTATCAGAAGAGGTTCATTGAGCTCTATGGCCAAGTTTCAGCAACACATAAGGAGACCAAGCAGTTCTTCACCTTGTATTACACATTAGATGACAAGAAGGTGTACCTGGAGAAGGAGGTGAACTTGCTGAATTCCATCCATGACAACTTCCAACAGTGA

Function

symbol description
ccdc93 Predicted to be involved in Golgi to plasma membrane transport. Predicted to be located in early endosome. Orthologous to human CCDC93 (coiled-coil domain containing 93).

NR:

description
LOW QUALITY PROTEIN: coiled-coil domain-containing protein 93

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965063.1 True 1728 mRNA 0.49 19 64884338 64895983

Neighbor

gene id symbol gene type direction distance location
LOC110520388 cssa25h3orf38 coding downstream 28487 64852503 ~ 64855851 (-)
LOC110520379 NA coding downstream 242773 64485789 ~ 64641565 (-)
LOC110520380 LOC106586540 coding downstream 710062 63911999 ~ 64174276 (-)
LOC110505395 LOC106586542 coding downstream 980120 63901468 ~ 63904218 (-)
LOC110505387 LOC106586543 coding downstream 997837 63881857 ~ 63886501 (-)
en1a en1 coding upstream 91770 64987753 ~ 64995840 (-)
c1ql2 LOC106586564 coding upstream 210746 65106729 ~ 65108799 (-)
c3h2orf76 cssa25h2orf76 coding upstream 250537 65146520 ~ 65150171 (-)
LOC110520397 sctr coding upstream 277975 65173958 ~ 65182654 (-)
LOC110520402 gja3 coding upstream 424911 65320894 ~ 65326014 (-)
G286426 NA non-coding downstream 99487 64783433 ~ 64784851 (-)
G286299 NA non-coding downstream 106401 64777664 ~ 64777937 (-)
G286292 NA non-coding downstream 114312 64769797 ~ 64770026 (-)
G286253 NA non-coding downstream 147129 64736919 ~ 64737209 (-)
G286247 NA non-coding downstream 152452 64731677 ~ 64731886 (-)
G286520 NA non-coding upstream 73252 64969235 ~ 64969459 (-)
G286523 NA non-coding upstream 75275 64971258 ~ 64971597 (-)
G286536 NA non-coding upstream 82263 64978246 ~ 64978524 (-)
G286579 NA non-coding upstream 101245 64997228 ~ 64997456 (-)
G284018 NA other downstream 2169161 62714575 ~ 62715177 (-)
G277749 LOC106586429 other downstream 7295155 57584386 ~ 57589183 (-)
G277673 LOC106586423 other downstream 7480763 57402984 ~ 57403575 (-)
si:dkey-91i10.3 LOC106586420 other downstream 7586576 57270782 ~ 57297762 (-)
G275250 NA other downstream 9472851 55410143 ~ 55411487 (-)
G286522 NA other upstream 73566 64969549 ~ 64970755 (-)
G286580 marco other upstream 118276 65014259 ~ 65029736 (-)
G286638 NA other upstream 158717 65054700 ~ 65075985 (-)
G286953 LOC107579696 other upstream 339197 65235180 ~ 65235908 (-)
G286985 LOC106586592 other upstream 402224 65298207 ~ 65300417 (-)

Expression


Co-expression Network