LOC110520397 (sctr)


Basic Information

Item Value
gene id LOC110520397
gene name sctr
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65173958 ~ 65182654 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965070.1
GTGACAGCGTCGCGCATTGAGCAGTAGGCGGGGTCTACAGAAAAGGGAATATCTATTTTACGCTGCATCTGAAGTTTACAGTTTTGTGTAAATCAGGGTTGAGATAACCAGGACAAGACACTGTCACCTGTTTTCAGGATTTAGGCACCGAATAACTCTCTGCTTCGGTCAAGTAATATTCCTGGAATTTTCTATTGATATTTTTTGTCCAGGTTAACATTGCGCACCTGAATTGTCTCTCCTAGCGGATACCgtataaatatatttgtttattttatttctcaATTTGTCTTGGCAATACCATAGCTGCAATGAGGATAAACAGACAATTGCGTAGGATTGTGCTTATAGCAGCTCTTCTCGACTTCTCTTCCAATGTGAAGGCCATTCCTCCAGAATGTGACCCGGACTACATCTTACTCCAAGATGAGGAGAGCTGCTTCAAGGATCTGTTCAAGATCAACATCAGCCAGGCTGACTCTCAAcaaccaggcaaAGAACCTTTAGAATACCTGTGGATGACACCCATTATGTCTCCTGTAGAGTGCAGAGGTTTGTGGGACCACCTGAACTGCTGGCCTCATACTGATGTGGGAGAGACTGTGTCACAGCCATGTCCCAGATTCCTCCGAACCACAGgCAGAGTATACAGGAACTGCACAGAGCACGGCTGGACTGAGCCATTTCCTCCACATGAGATAGCCTGCGAGTATGCCTTTGAGACCCTCACCTTCCCTTTTGAGGCACCCAGGTCCCATGGCTACTTCCTCTATGTGCAAGTCATGTACTCGGTGGGCTATGCTATCTCTACTGCGTCTCTTACCATCGCCACTGCCACACTCTGTCTGTTCAGGAGGCTCCACTGCACCCGTAACTATGTCCACATCCAACTGttcctctccttcatcctccgAGCCACCTTCATCTTCATCAGAGATGCTGTGCTCTTCTCCTCTGATGACCACTTCCACTGTGACTCCTATCCGGTCAGCTGTAAGATTGCAACATCGTTCTCCAACTACTGCATCATGGCCAACTACAGCTGGCTGCTGGCCGAGGGACACTACCTGTACAGCCTGGTCAgtgtctccctcttctcccagaAGAGGCACCTCAGGTGGTACATCGTCCTGGGCTGGGGTTCCCCAATGGTCATTATAGTAGCCTGGAGTTTGGCAAAATATACCCAGGAGAATGAAGGgtgctgggagaggaggggacacgAGGGGATCTGGTGGATTCTCAGAGTTCCTGTTCTCCTCTTCATCGTTGTTAACTTGCTGTTTTTTCTGAGTATCATAAGAATCCTGGTGGCCAAGTTGAGGACACAGGAAATGCATAGAAATGAGTTGAACCAGTATAGgAGGCTTGCTAAGTCCACCGTTCTCCTGGTATCTCTCTTTGGTTTGCACTACGTCCTCTTTGCATTCCTCCCACATAAagtcagtgaaatatggaacttTATCGAGCTGGCTTTTGCTTCCACTCAGGGGTTTGTAGTAGCAGTTCTATATTGTTTTCTGAATGGAGAGGTTCAGTATGAGGTTCAGAGGAGGTGGAGGCGATGGAGGCTGAAGCAGCATCTACCTGGGGAGGCCAGGTGCCAACATGGCTCCATGAGTCAGAGTGTAGGGGCCCATACCCAGGTCTCCTTCCTGACCCGGGGACCCTCCACACGCCATTCTAGTCTGGTGTAGCACATCCAGTCACTCCTCACTATACTGTACCTACGAGGCTTTGTCAATGGATAGGTGCCATGTGTGTTCCACAGTCTGTCTGTGACATTCTGACATTCCTGTTTGACTCTTGAAGGATGAGGcctcctttttattttttttctgttGAGTGTATATGATCTTTGACCGGCATGGCATTTAGTGACAGGACTGGACCTTTGGTTGTGGGGTCAAAACGCTGAAACATTTCTGTGCATGGGTTTGCTATTCTGACCTTTCCTCATCTTCACCTGCAGTCACGCATGGCACACACACTGCATGACTATCAGGAATGCACCTACCCACCTGTACAATTGTCAATATGACCAGGTATTCTAAAGGACCATGTGGACATGCTTAATTTTATTTATTGGCTTTCTAACATGTATATTCCAAGTGTTACATATGATATGTGTATGTTTAACCATGAAAACAAGAGCTGTTGTAAAGTTTAAAGGAATTTGTGTGAATGTATTGGTGACAGTTCCTAGAATTAATTTAACCATGCTATGTTAGTTATATTACATGTGCTTCACACATGATCAATGATGGTACGACTTGATGACATCAACTCTCAcaataaatgtattttaaaagtCATTATCACCACGGGGTgagatacttattttccaccatcatttgcaaataaattcataaaaaatccta
>TU325296
ACCATGTGGACATGCTTAATTTTATTTATTGGCTTTCTAACATGTATATTCCAAGTGTTACATATGATATGTGTATGTTTAACCATGAAAACAAGAGCTGTTGTAAAGTTTAAAGGAATTTGTGTGAATGTATTGGTGACAGTTCCTAGAATTAATTTAACCATGCTATGTTAGTTATATTACATGTGCTTCACACATGATCAATGATGGTACGACTTGATGACATCAACTCTCAcaataaatgtattttaaaagtCATTATCACCACGGGGTgagatact

Function

symbol description
sctr Enables peptide hormone binding activity and secretin receptor activity. Involved in G protein-coupled receptor signaling pathway. Located in cytoplasmic microtubule.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965070.1 False 2381 mRNA 0.46 13 65173958 65182654
TU325296 True 281 lncRNA 0.32 1 65174001 65174281

Neighbor

gene id symbol gene type direction distance location
c3h2orf76 cssa25h2orf76 coding downstream 23787 65146520 ~ 65150171 (-)
c1ql2 LOC106586564 coding downstream 65159 65106729 ~ 65108799 (-)
en1a en1 coding downstream 181805 64987753 ~ 64995840 (-)
LOC118944694 ccdc93 coding downstream 277975 64884338 ~ 64895983 (-)
LOC110520386 LOC106586581 coding downstream 282971 64862026 ~ 64890987 (-)
LOC110520402 gja3 coding upstream 138240 65320894 ~ 65326014 (-)
gjb8 cxb6 coding upstream 143508 65326162 ~ 65330529 (-)
cryl1 NA coding upstream 148178 65330832 ~ 65362601 (-)
eef1akmt1 eef1akmt1 coding upstream 204869 65387523 ~ 65390331 (-)
xpo4 xpo4 coding upstream 210195 65392849 ~ 65432153 (-)
G286921 NA non-coding downstream 343 65173339 ~ 65173615 (-)
G286918 NA non-coding downstream 7392 65164639 ~ 65166566 (-)
G286915 NA non-coding downstream 18952 65154483 ~ 65155006 (-)
G286914 NA non-coding downstream 19969 65153353 ~ 65153989 (-)
G286912 NA non-coding downstream 21830 65151929 ~ 65152128 (-)
G286925 NA non-coding upstream 3617 65186271 ~ 65186516 (-)
G286929 NA non-coding upstream 8315 65190969 ~ 65191506 (-)
G286951 NA non-coding upstream 48780 65231434 ~ 65231863 (-)
G286952 NA non-coding upstream 49392 65232046 ~ 65232660 (-)
G286927 NA non-coding upstream 56414 65239068 ~ 65240985 (-)
G286638 NA other downstream 97973 65054700 ~ 65075985 (-)
G286580 marco other downstream 144222 65014259 ~ 65029736 (-)
G286522 NA other downstream 203203 64969549 ~ 64970755 (-)
G284018 NA other downstream 2458781 62714575 ~ 62715177 (-)
G277749 LOC106586429 other downstream 7584775 57584386 ~ 57589183 (-)
G286953 LOC107579696 other upstream 52526 65235180 ~ 65235908 (-)
G286985 LOC106586592 other upstream 115553 65298207 ~ 65300417 (-)
G287042 NA other upstream 264171 65446825 ~ 65447283 (-)
G287112 NA other upstream 397137 65579791 ~ 65580495 (-)
G288578 NA other upstream 1660017 66842671 ~ 66842881 (-)

Expression


Co-expression Network