LOC110520400


Basic Information

Item Value
gene id LOC110520400
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65241290 ~ 65242647 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002472974.2
tagttttgtgagccaatgctaactagcattagcactatgactggaagtctatgggtatctagtAGGATGCtaagcagatacccatagacttccagactTCCACAACACCCTAGGTAAGTTGAAAATAAGCTAAACCTTCAAAAAAGTGATCTGTCCCTTTAATACTTTGAACAATTATACAGATGCAGTACATTTGGATTGCTGCACTTGTTTGGGGGAAAGCTTTTCATCATAATCTcggtctccctctccttcctttctctttcCAGGCTCTGGTATCTTGCTCTTACTTTTCCTTGCTAACTTCCTGAGGTGAGATCACAGCCAGGCTGTGCAGGCACTACAGTGTTCATGCCATGGTGCTTAACGACATGTTCCAGCTGCCCATCTTCCTGGACAGTCACTTCATCTACTCATTCAGCCCAGTGCCAGGCATCAACAAACTGTTAATTTGCCTGGCAGAGtcacctacacacacagcctAACTCATAGCCATGGTGAGAGGGGCTCTAGTCCAAGTTATTGTAAAAGACTGACAAGTTGTTAAAAGGgctaaataaataacattttattgatggactcctctctccccaggtgaAGCTTCTCGTCTGTGCATACCATGTTCAGCTACAGTGAGTTCAGAGTTCACAAGTTGTGTGGATCCCAAGCACAGAATGGGAgataaaacacacaaacactgagtTTACATAACGTAAATTGACTAGGTGAATCCacgtgaaagctatgatccctcgagacaattgagacatggattgtgtatgtgtggcattcagagggtgaatgggtaagacacaAACATATAAGTGCTTTGAGCAGGGTCaataactgcaacgctgctgggttgttcacactcaaccgtttccagtgtgtatcaaaaATGACCAGTAGCCTGGTgcataactgtgggaagcattggagtcaccatgggccagtatccctgtgaaacactttcgacaccttgtgaaGTCCATGCCCTCGATGAATTGATTCTGTTCTGAAGGTaaaaggggttgcaactcaatattaggaaggtgttcctaatgttttgtgcactgtgTAGATGCATGCATAATCACAAAACATGAAGAACAGTTTGAGCCACACTCCAGGCTACCTTCAGATAAAGTTGTTGGACATTCAGCATCCACACAGAGTTTGAGACACTGTTTCTGTGGCAGAGGATTAAAGGACAAGAACAGAAACAA

Function

NR:

description
M-phase phosphoprotein 8-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002472974.2 True 1226 mRNA 0.44 2 65241290 65242647

Neighbor

gene id symbol gene type direction distance location
LOC118964311 LOC106586591 coding upstream 9945 65217057 ~ 65231345 (+)
LOC110520399 LOC106586589 coding upstream 28476 65192057 ~ 65212814 (+)
tmem37 tmem37 coding upstream 66954 65170904 ~ 65176413 (+)
LOC110520396 LOC100136409 coding upstream 74710 65161342 ~ 65166580 (+)
steap3 LOC106586584 coding upstream 94775 65133269 ~ 65146515 (+)
zmym2 LOC106586592 coding downstream 17553 65260200 ~ 65311166 (+)
ift88 ift88 coding downstream 120089 65362736 ~ 65386706 (+)
LOC110520411 NA coding downstream 246559 65489157 ~ 65491432 (+)
popdc2 popdc2 coding downstream 249312 65491959 ~ 65503791 (+)
wars2 wars2 coding downstream 340388 65583035 ~ 65599863 (+)
G286775 LOC107756720 non-coding upstream 5550 65234814 ~ 65235740 (+)
G286739 NA non-coding upstream 8676 65232222 ~ 65232614 (+)
G286734 NA non-coding upstream 9439 65231470 ~ 65231851 (+)
G286772 NA non-coding upstream 25465 65215426 ~ 65215825 (+)
G286769 NA non-coding upstream 54036 65186980 ~ 65187254 (+)
G286777 NA non-coding downstream 8436 65251083 ~ 65251369 (+)
G286790 NA non-coding downstream 48819 65291466 ~ 65334118 (+)
G286791 NA non-coding downstream 58241 65300888 ~ 65301795 (+)
G286726 LOC106582068 non-coding downstream 151729 65394376 ~ 65394785 (+)
G286824 xpo4 non-coding downstream 165089 65407736 ~ 65410917 (+)
G286679 NA other upstream 131653 65109256 ~ 65109637 (+)
G285763 NA other upstream 933930 64306512 ~ 64307360 (+)
G285203 NA other upstream 1157308 64071432 ~ 64083982 (+)
G285001 NA other upstream 1495797 63743006 ~ 63745493 (+)
LOC118964312 LOC106586611 other downstream 791773 66027633 ~ 66036299 (+)
G288252 NA other downstream 1307175 66549822 ~ 66550487 (+)
G288430 NA other downstream 1488639 66731286 ~ 66733797 (+)
LOC110505407 LOC106586622 other downstream 1540726 66783373 ~ 66787442 (+)

Expression


Co-expression Network