XLOC_021713 (ccn5)


Basic Information

Item Value
gene id XLOC_021713
gene name ccn5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 25993686 ~ 26003858 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043097
GCTTTTCTTCCAGAAGTCCATGTTTCATCACTGCACACCAGAGCAGGCGAGTGGAGGGAGAAAATCATTTCTGCTTGTGGAAATGGGCAACGGAGATGTGGAATTCGAAACATTTCTGATCCCGGTCCAGCCACTGTTTACCCTGCAGTCAGGCTATGACATCAGAGCGAGGACTTTATAAAAGTGCTTGTGCACAGAGCCAGGCAGCGAGCAAACACTTACACAAGCTGAAAATCTCATTGTGGTGGAACATATTGCAGAACGTAATGGACAGGCAGCTGAGAGACAAAAGGACTGGAGAGCTGGTGGCATGGACACTGCTGTTTTACCTGAGCTCGCAGGTGTGCTGTCAGCAGTGTGGCAGCTCATGTCAGTGCCAAGGCTCTGTGCCATCCTGTCCAGAAGGAGTTCCTCTCATTCTCGACGGGTGCCAGTGCTGCCAGGTGTGTGCCCGACAGCAGGGGGAGGCCTGCAGTgaggtgtttccctgtgatggtcAGCGTGGTCTGCAGTGTGACTACAGCGCCAGCTTTCCTGGAGAGCCGGGAGAGTGTGTCAGTCAGAAGGAGCTGGGCTGTGAGCTCAATGGAGTTTCTTACCAGGAAGGTCAGGTATTTCAGCCCTCCTGTTCTCTCCAGTGCCAATGTTCGGGTGGAGGGGTGACCTGTGTGCCCCAGTGCCGTGAGGATGTTCTCCTGCCCACACCAGACTGCCCTCATCCTCGAAGAGTTCAACCACCAGGAAAATGCTGTAAAGAGTGGGTGTGTGAAAATCTGGACAACACTGTGCTTCAGGATGCTCACATAGCCTCCAAAAGTGACCTGACATTGCCTGCAGACTCTGGATACCAAACAAGAGTCGTGTCAAACTGTATAGACCAGAGCTCAGAGTGGAGTGCTTGCTCGCGTACCTGCGGGTCTGGAATATCCGTACGGGTGTCCAACCAAAACCCGTCCTGTGTCTTGGAGATGCAGATGCGCTTGTGTATGATCCGACCCTGCCAGCCTGTCCTCCACAGAAGCCCACAGTGGTCAAGAAGGAAATGTCAACCCAGCTACAGGTCAGCGACTCCAGTGCGGCTTTTCCACCAGGGCTGCTACAGCACACGGTTCTACAGGCCGCGTTATTGCGGCTCATGTACAGACAACCGTTGTTGTACACCATACCAGACTGGCACGGCAATGGTCACTTTCCGCTGCCCTGGAGGAAGACTGCTCAATCATGCTGTCATGACCATCAACTCCTGCATCTGCCATTACAATTGCCCCTATTCATCAAGAGGAACATCATTCTGGGGTTAGGCACTCACTCTAATATATAGGCTGACTCTGGATCTAGTACCTTCCTATTGGATGCTGAAGTTTTATATATTGTATCAAGTGTTAAATGGACTATTTGTAGAATTC
>TCONS_00043099
GTGTGCTGTCAGCAGTGTGGCAGCTCATGTCAGTGCCAAGGCTCTGTGCCATCCTGTCCAGAAGGAGTTCCTCTCATTCTCGACGGGTGCCAGTGCTGCCAGGTGTGTGCCCGACAGCAGGGGGAGGCCTGCAGTgaggtgtttccctgtgatggtcAGCGTGGTCTGCAGTGTGACTACAGCGCCAGCTTTCCTGGAGAGCCGGGAGAGTGTGTCAGTGAGTCAGAAGGAGCTGGGCTGTGAGCTCAATGGAGTTTCTTACCAGGAAGGTCAGGTATTTCAGCCCTCCTGTTCTCTCCAGTGCCAATGTTCGGGTGGAGGGGTGACCTGTGTGCCCCAGTGCCGTGAGGATGTTCTCCTGCCCACACCAGACTGCCCTCATCCTCGAAGAGTTCAACCACCAGGAAAATGCTGTAAAGAGTGGGTGT
>TCONS_00043100
CCTCCAAAAGTGACCTGACATTGCCTGCAGACTCTGGATACCAAACAAGAGTCGTGTCAAACTGTATAGACCAGAGCTCAGAGTGGAGTGCTTGCTCGCGTACCTGCGGGTCTGGAATATCCGTACGGGTGTCCAACCAAAACCCGTCCTGTGTCTTGGAGATGCAGATGCGCTTGTGTATGATCCGACCCTGCCAGCCTGTCCTCCACAGAAGCCCACAGTGGTCAAGAAGGAAATGTCAACCCAGCTACAGGTCAGCGACTCCAGTGCGGCTTTTCCACCAGGGCTGCTACAGCACACGGTTCTACAGGCCGCGTTATTGCGGCTCATGTACAGACAACCGTTGTTGTACACCATACCAGACTGGCACGGCAATGGTCACTTTCCGCTGCCCTGGAGGAAGACTGCTCAATCATGCTGTCATGACCATCAACTCCTGCATCTGCCATTACAATTGCCCCTATTCATCAAGAGGAACATCATTCTGGGGTTAGGCACTCACTCTAAT

Function

symbol description
ccn5 Predicted to enable heparin binding activity and integrin binding activity. Predicted to be involved in cell adhesion; negative regulation of cell death; and signal transduction. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Is expressed in pharyngeal arch. Orthologous to human CCN5 (cellular communication network factor 5).

GO:

id name namespace
GO:0060548 negative regulation of cell death biological_process
GO:0007155 cell adhesion biological_process
GO:0007165 signal transduction biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0005520 insulin-like growth factor binding molecular_function
GO:0008201 heparin binding molecular_function
GO:0005178 integrin binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-060223-1 Predicted to enable heparin binding activity and integrin binding activity. Predicted to be involved in cell adhesion; negative regulation of cell death; and signal transduction. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Is expressed in pharyngeal arch. Orthologous to human CCN5 (cellular communication network factor 5).

Ensembl:

ensembl_id ENSDARG00000077882

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043097 False 1406 mRNA 0.52 5 25993686 26003858
TCONS_00043099 False 428 mRNA 0.58 2 25995727 25998246
TCONS_00043100 True 508 mRNA 0.53 2 26003187 26003767

Neighbor

gene id symbol gene type direction distance location
XLOC_021712 pkig coding upstream 50827 25879320 ~ 25942859 (+)
XLOC_021711 ttpal coding upstream 118809 25868637 ~ 25874877 (+)
XLOC_021710 hnf4a coding upstream 127830 25832689 ~ 25865856 (+)
XLOC_021709 r3hdml coding upstream 166316 25821055 ~ 25827370 (+)
XLOC_021708 rbms2b coding upstream 224921 25708787 ~ 25768765 (+)
XLOC_021715 si:dkey-78k11.9 coding downstream 5408 26009266 ~ 26010376 (+)
XLOC_021716 pfkfb1 coding downstream 13369 26017227 ~ 26037969 (+)
XLOC_021717 itih6 coding downstream 35666 26039524 ~ 26056072 (+)
XLOC_021718 atp6ap1b coding downstream 75609 26079467 ~ 26094178 (+)
XLOC_021719 si:dkey-78k11.4 coding downstream 98170 26102028 ~ 26102795 (+)
XLOC_021691 BX957326.2 non-coding upstream 1432813 24556455 ~ 24560873 (+)
XLOC_021689 NA non-coding upstream 1501649 24483312 ~ 24492037 (+)
XLOC_021687 CR925709.3 non-coding upstream 1844915 24148055 ~ 24148771 (+)
XLOC_021686 NA non-coding upstream 1853276 24133781 ~ 24140410 (+)
XLOC_021683 dre-mir-7149 non-coding upstream 1919531 24074083 ~ 24074155 (+)
XLOC_021722 NA non-coding downstream 587266 26591124 ~ 26625133 (+)
XLOC_021724 CT573349.1 non-coding downstream 924885 26928743 ~ 26928858 (+)
XLOC_021731 NA non-coding downstream 1505009 27508867 ~ 27516273 (+)
XLOC_021738 NA non-coding downstream 1866881 27870739 ~ 27872705 (+)
XLOC_021742 NA non-coding downstream 2135901 28139759 ~ 28277430 (+)

Expression


Co-expression Network