gjb8 (cxb6)


Basic Information

Item Value
gene id gjb8
gene name cxb6
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65326162 ~ 65330529 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597699.2
TAAAACTACACACTCCTGAACTGATGAGCCAATGGGGTTGATGAGCGCTCCTTTTCTTCGTCCCGCCCCCTAGCAGGTAGATTGTCCTCGAGTGAAGATCGTAAAAACTCAGGTACATCTCATCAGAGCGCAGACTTCACAGTCGGACCTACTTCCAAACAACTAAATATTCCCCTCGGCTTCGTTTGGAGTTGCTCTCTCCGTCTTTGGTGATTCTTTGAACGACGGCATTAAAGTGCACCGAAAAGTAAAATTAATGGACGTTTGCTGAAATTCCGAGGAGGTGGTCTAAGCCAAAGCTGCTGTAGAGATGAGTTGGGGGGCTCTGTATGCCCAGCTGGGCGGGGTGAACAAACACTCCACCAGCCTGGGGAAGATCTGGCTGTCTGTCCTATTCATCTTCCGTATCACCATCCTGGTACTGGCTGCAGAGAGCGTGTGGGGAGACGAGCAGTCTGACTTCACCTGCAACACCCAGCAGCCCGGCTGTAAGAACGTCTGCTACGACCACTTCTTCCCTGTGTCACACATCCGTCTCTGGTGCCTGCAGCTGATCTTCGTGTCCACACCGGCCCTGCTGGTGGCCATGCACGTGACTTACAGGAAGCGTGGGGACAAGAAGCACATCATTGCGACGGCCTTGCACAGTGGTGGTGATGACAAGACCAGGCAGGTGGACCTAGAGGCCCTGAAGAGTCGTCGTCTGCCCATCACGGGGCCTCTGTGGTGGACGTACACCTGCAGCCTGTTCTTCCGCCTGATTTTTGAGGCTGGCTTTATGTACGCCCTCTACTTTGTTTACGATGGCTTTGCGATGCCTCGTCTGGTGAAGTGTGAGCAGTGGCCCTGCCCAAACAAGGTGGACTGCTTCATCTCACGACCCACGGAGAAGACCATCTTCACCATCTTCATGGTGGCTTCGTCTGCCATCTGCATGGTTCTCAACGTGACCGAGCTGGCCTACCTCATCGTCAAGGCCCTGATGAGGTGCTCCACCAGGATGTCCAAGAAGAGCCGTGCCTACGCTCACCCCGATCACATAACCACGAACAAGTCCCTACTACAGAATAAAAAGAACGAGATGCTGCTGTCCTCTCTTACAGATTCCTCCAGCACCAAGACCGTGTGAGCCCAGCATAGTGTCCATGTTCTTCCCCATTTAGACTACAGAGAACTAGGGAGTAGAAAcctatcagtgttttgttaccATGAGAAGAGAACATGTGAGGACATACCTGTAGCAGCTGAGAGGACTGGCCTAACCCTGAGTCTGCTTTTCTAGAGCAGATTCCCaattccagtcctccagtacccccaacagcagatgtttttgttgtagccctggatGAACATGCCTGATTCAACTCACTGAGCGATTGCTAATTAGTTGACAAGTTTAATCAGATGTGCTTGTCCAATGTGTAttgttgggggtactcgaggactggCGTTGGGGAACACTGTCGTAGAGGATATATATATTTCTGTGCCTTCCACTATGACTGATCTATGGGGTAATGttttagcattttttttttatgtattttttttattttatttatcttggTGCTTGTGTGTTTGAGCTACATGTGTGTTTGGGAGGTTGAACAGCAGTGACAAATGGGTCTAGATCGCCACCTTCTGGTTTACAATGAGCTTGCAGGAGTTTGTTTTATTGTGGAGCGCAACCAGAATTGGTTTATGTTACTACTTCAGCTTTGTGGGACACTTTACCAAAGCAGAAACTCACAAGTGTGCAGTATAGCTCCAAGTTCTATTTGAGGCTCATACCGGCGAAGGAAATGTATTGAGTACCAAAGCAATTTTAAAACAGTGCCTTCGTCTATTAGCGGTGTCAAACAGTATGATGTAGATGCTGTATATTGAGCATTTACAtttaagtaatttagcagatgctcttatccggAGAAACGTACAGTAGTGAATGCATACCTTTTCACATTTGTTCGTACCGGTCCCCCATAAGCCTGACGTTGTGAgtgccacgctctaccaactgagccacaccgAGCACAATGTTTTTAGGTAGCATGGCTGATACACTTGAACATTATGGACAGATTTCCTGGACCCAAATGAAGCCTATTCCTGTACttaaaaagcatgctcaatgggGAATATCCATGCTTCTTGGTCCAGGAGTAGGCTTAAGCTGGGTACTGGAAACGGAACCTCTGAGCATTATGCCAACTGAGTCCGACATATAGCCTATTGTTGTCAAGACTGATTGTAAACGTGGCTACAGAGCCTAACAGCTTGTTCCTTATTTTAGGCACTGAACATATCACTGCACCTCTTTCAATGTGAGTTAGCGGGCTGATCTACAGGCAAAACTGGCCTAATGTGCTTTGTTCAAAAATGCATGTAGAAGTTGGACCATAACTTGTATCACTGTAGTGACAATTTGACTGTTACCTGTGAAAAGGTAAGGACAGTTTTAGTAATGAGATGCATCACACACATATGTGAAAGCACTTTGTGGGCTTACTTCCTCTCACAATCTTTACAGTTGTATGGGGgctttttgtatgtttttttacATTGACTGTTTGGAGAAAATGCTAAATTCAGTAGTACAAATCGTTCGGGAACATTTTTGAAAGCCTCAACATTGCCACTTGCTTCTTTACAGCAGCTAGAGCCTAGCTATTAATGTACAGATTTCTAACCTGCATGTTTTTGATGTTTGTATTTTTTAGATCTGCACTCTGACCCTGAGTCTTGACTTttaattaaaaaacaaatgata
>XM_021597700.2
TCTGAACATTAACACGAGTCCCTTGCTGTATTGGAAACATAAGGACATTTCATAtcgtaaataataatacaacaaaGTTACATTGATACACACCTTttaatagggttagggttcccacacggacatatttccatgttacagcgcttgtttacgGGAGACGCTGGACTGTGCTAATAGCTATATGCgtctctgaacacctgtgtgtaaatgGAAGACCGACGCCACACACGTCACTGAAACGTGCTGCAACTATGCTAAACCCGGTTAACACAGTGTACACTAACAGGTAGATTGTCCTCGAGTGAAGATCGTAAAAACTCAGGTACATCTCATCAGAGCGCAGACTTCACAGTCGGACCTACTTCCAAACAACTAAATATTCCCCTCGGCTTCGTTTGGAGTTGCTCTCTCCGTCTTTGGTGATTCTTTGAACGACGGCATTAAAGTGCACCGAAAAGTAAAATTAATGGACGTTTGCTGAAATTCCGAGGAGGTGGTCTAAGCCAAAGCTGCTGTAGAGATGAGTTGGGGGGCTCTGTATGCCCAGCTGGGCGGGGTGAACAAACACTCCACCAGCCTGGGGAAGATCTGGCTGTCTGTCCTATTCATCTTCCGTATCACCATCCTGGTACTGGCTGCAGAGAGCGTGTGGGGAGACGAGCAGTCTGACTTCACCTGCAACACCCAGCAGCCCGGCTGTAAGAACGTCTGCTACGACCACTTCTTCCCTGTGTCACACATCCGTCTCTGGTGCCTGCAGCTGATCTTCGTGTCCACACCGGCCCTGCTGGTGGCCATGCACGTGACTTACAGGAAGCGTGGGGACAAGAAGCACATCATTGCGACGGCCTTGCACAGTGGTGGTGATGACAAGACCAGGCAGGTGGACCTAGAGGCCCTGAAGAGTCGTCGTCTGCCCATCACGGGGCCTCTGTGGTGGACGTACACCTGCAGCCTGTTCTTCCGCCTGATTTTTGAGGCTGGCTTTATGTACGCCCTCTACTTTGTTTACGATGGCTTTGCGATGCCTCGTCTGGTGAAGTGTGAGCAGTGGCCCTGCCCAAACAAGGTGGACTGCTTCATCTCACGACCCACGGAGAAGACCATCTTCACCATCTTCATGGTGGCTTCGTCTGCCATCTGCATGGTTCTCAACGTGACCGAGCTGGCCTACCTCATCGTCAAGGCCCTGATGAGGTGCTCCACCAGGATGTCCAAGAAGAGCCGTGCCTACGCTCACCCCGATCACATAACCACGAACAAGTCCCTACTACAGAATAAAAAGAACGAGATGCTGCTGTCCTCTCTTACAGATTCCTCCAGCACCAAGACCGTGTGAGCCCAGCATAGTGTCCATGTTCTTCCCCATTTAGACTACAGAGAACTAGGGAGTAGAAAcctatcagtgttttgttaccATGAGAAGAGAACATGTGAGGACATACCTGTAGCAGCTGAGAGGACTGGCCTAACCCTGAGTCTGCTTTTCTAGAGCAGATTCCCaattccagtcctccagtacccccaacagcagatgtttttgttgtagccctggatGAACATGCCTGATTCAACTCACTGAGCGATTGCTAATTAGTTGACAAGTTTAATCAGATGTGCTTGTCCAATGTGTAttgttgggggtactcgaggactggCGTTGGGGAACACTGTCGTAGAGGATATATATATTTCTGTGCCTTCCACTATGACTGATCTATGGGGTAATGttttagcattttttttttatgtattttttttattttatttatcttggTGCTTGTGTGTTTGAGCTACATGTGTGTTTGGGAGGTTGAACAGCAGTGACAAATGGGTCTAGATCGCCACCTTCTGGTTTACAATGAGCTTGCAGGAGTTTGTTTTATTGTGGAGCGCAACCAGAATTGGTTTATGTTACTACTTCAGCTTTGTGGGACACTTTACCAAAGCAGAAACTCACAAGTGTGCAGTATAGCTCCAAGTTCTATTTGAGGCTCATACCGGCGAAGGAAATGTATTGAGTACCAAAGCAATTTTAAAACAGTGCCTTCGTCTATTAGCGGTGTCAAACAGTATGATGTAGATGCTGTATATTGAGCATTTACAtttaagtaatttagcagatgctcttatccggAGAAACGTACAGTAGTGAATGCATACCTTTTCACATTTGTTCGTACCGGTCCCCCATAAGCCTGACGTTGTGAgtgccacgctctaccaactgagccacaccgAGCACAATGTTTTTAGGTAGCATGGCTGATACACTTGAACATTATGGACAGATTTCCTGGACCCAAATGAAGCCTATTCCTGTACttaaaaagcatgctcaatgggGAATATCCATGCTTCTTGGTCCAGGAGTAGGCTTAAGCTGGGTACTGGAAACGGAACCTCTGAGCATTATGCCAACTGAGTCCGACATATAGCCTATTGTTGTCAAGACTGATTGTAAACGTGGCTACAGAGCCTAACAGCTTGTTCCTTATTTTAGGCACTGAACATATCACTGCACCTCTTTCAATGTGAGTTAGCGGGCTGATCTACAGGCAAAACTGGCCTAATGTGCTTTGTTCAAAAATGCATGTAGAAGTTGGACCATAACTTGTATCACTGTAGTGACAATTTGACTGTTACCTGTGAAAAGGTAAGGACAGTTTTAGTAATGAGATGCATCACACACATATGTGAAAGCACTTTGTGGGCTTACTTCCTCTCACAATCTTTACAGTTGTATGGGGgctttttgtatgtttttttacATTGACTGTTTGGAGAAAATGCTAAATTCAGTAGTACAAATCGTTCGGGAACATTTTTGAAAGCCTCAACATTGCCACTTGCTTCTTTACAGCAGCTAGAGCCTAGCTATTAATGTACAGATTTCTAACCTGCATGTTTTTGATGTTTGTATTTTTTAGATCTGCACTCTGACCCTGAGTCTTGACTTttaattaaaaaacaaatgata

Function

NR:

description
gap junction beta-2 protein-like

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K07621 GJB2, CX26; gap junction beta-2 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597699.2 False 2770 mRNA 0.46 2 65326162 65329900
XM_021597700.2 True 2980 mRNA 0.46 3 65326162 65330529

Neighbor

gene id symbol gene type direction distance location
LOC110520402 gja3 coding downstream 148 65320894 ~ 65326014 (-)
LOC110520397 sctr coding downstream 143508 65173958 ~ 65182654 (-)
c3h2orf76 cssa25h2orf76 coding downstream 175991 65146520 ~ 65150171 (-)
c1ql2 LOC106586564 coding downstream 217363 65106729 ~ 65108799 (-)
en1a en1 coding downstream 334009 64987753 ~ 64995840 (-)
cryl1 NA coding upstream 303 65330832 ~ 65362601 (-)
eef1akmt1 eef1akmt1 coding upstream 56994 65387523 ~ 65390331 (-)
xpo4 xpo4 coding upstream 62320 65392849 ~ 65432153 (-)
LOC110520406 LOC106586596 coding upstream 107034 65437563 ~ 65459000 (-)
ska3 ska3 coding upstream 141756 65472285 ~ 65476510 (-)
G286979 NA non-coding downstream 21664 65290732 ~ 65304498 (-)
G286986 NA non-coding downstream 25238 65300694 ~ 65300924 (-)
G286961 NA non-coding downstream 73374 65251989 ~ 65252788 (-)
G286960 NA non-coding downstream 74313 65251643 ~ 65251849 (-)
G286959 NA non-coding downstream 75664 65250231 ~ 65250498 (-)
G287005 NA non-coding upstream 7644 65338173 ~ 65339895 (-)
G287041 NA non-coding upstream 115550 65446079 ~ 65446302 (-)
G287043 NA non-coding upstream 117539 65448068 ~ 65448417 (-)
G287067 NA non-coding upstream 196419 65526948 ~ 65532451 (-)
G287081 NA non-coding upstream 224001 65554530 ~ 65554731 (-)
G286985 LOC106586592 other downstream 25745 65298207 ~ 65300417 (-)
G286953 LOC107579696 other downstream 90254 65235180 ~ 65235908 (-)
G286638 NA other downstream 250177 65054700 ~ 65075985 (-)
G286580 marco other downstream 296426 65014259 ~ 65029736 (-)
G286522 NA other downstream 355407 64969549 ~ 64970755 (-)
G287042 NA other upstream 116296 65446825 ~ 65447283 (-)
G287112 NA other upstream 249262 65579791 ~ 65580495 (-)
G288578 NA other upstream 1512142 66842671 ~ 66842881 (-)
G289678 NA other upstream 2296303 67626832 ~ 67633493 (-)
G289653 LOC106607871 other upstream 2553223 67883752 ~ 67886232 (-)

Expression


Co-expression Network