ska3 (ska3)


Basic Information

Item Value
gene id ska3
gene name ska3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65472285 ~ 65476510 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974951.1
gtatgtgtgccattcagagggtggatgggcaagtcaacatgggccagcattcaattggaacgctttcgacacgtTGTAGTCTATGCctgactaattgaggctgttcaatGCAAAAGGACTTGTAACAATTTCAACAGAAGATTTGACAAAAACAAATTTActtgaacagtgcagatgcaaaAGTCGAGCGGCCAGGAGGCAGAAGCTTCAGAGAAAGAGGACGAGGGTGAGaccgagggaggagaggaggaccaggagaaaggagagggatacCTCACCTCAGTGACCCCTCTGAAGATGCCCCCTCCGCCCTTCATTGACCCCTTGCGCACCCCCCAGCTCTCTGACTTCGGCCTGTCGGAGATCCACCTGAAGAGGGTGTTGGGTGGCACAGTGTTTTCCAGCGCTGAGGCCCCCATGCCCATGATGACCCTCCCTCTGCCGTCTCTAGTCCTAGCCATGCAGCCACCCATGCCCAAAACGCCCAAGTGCACCTTGCGTATGGACGAAGATGACGACCTCCTGACCCCCCGCATGGTCGACTTTGGCCTCACGGAACACACTGTGTGTCTCAACAATGACTTCACCATGGACCTGCAGCGCAAGAAGCCCACAAAGCCTCTCAGCTCAGCAGTGTCCTTGGGCTTGGGAGTAATGTCACAGAGACCGGCACATGTCCTCTCCACTCCACCATCAAACTCCATGATGTACAGCCTGGCTACCATGGAGTCCCCCGAGCCGCCTGTATTTTGCACCCCAGGTCTGAAGATAACAAAGTCTCAGCGACACGCTCTGTCCCCTCCTCTGCAGGGAGAGATTGACCCAGAGTCCCCCTGTCGCCTTGGCAACCACCAAGCCACCCCTGAGGTCCCAGCATTTGAGACACCATACATCAACAGACTCCTTAGCACCAGAAAGGGTGAGAGAAACACACAGGCAGATGAAGACCAAGATCACTCAGAACTTCCAACCTCCAATAGAGGCTCCAGTCAAGCCTGGTCATATAATGTGTCAGAGATATCAATCATTGGATGTACAGAGGAAAAACTTACACCAGAGATGCCAAGCCTAGAGTCTTTTCTGGGCAGCTCTCTACCCTATAGGGGTGGCGGTGGAACCAGTGGAGAGCAGACTATGGGGTCAGGAgagccccctctctctttcctggaTCAGGATGGTCCCACCCAGACATTCAACCTGGGGACCCCACGGGTCAGAGGGGACTACCCCGAGCCATCCACCCCTGAGATGCCGGACCTAAGCTCTGTCACACAGGACATCTTTAAGCTTATTTCCCAGAGCAAGAAGCTCCCCACAGCAGTAGTTCAGCCACACCTCAAGCTTTCAACCCTCCACACTGCAACAGGGAAAGAGAACAGGGCTCAGAGTCTGGCTGTGGTGTCCGAGAGGGAGTTCCTCAGTCTTCCAAGCTATCTGAGACAGATTCCACTGTCCAGCCTCAACCAGGCCATTCAGAAGATCAACGGTGCCAAAGAGGAGCGAGGCCACAGTGGTGATGCGGGCCCTGCATGGTTTCTGATGGAGGAGCTGAAGAGGATCACTGGGGTGGGCACCAAGGCCCCCATGTACTTCCTGTGTCTGACTGAGTTAAAGAGGCTGGAGCATGTGCAGGGAGTAGGAACCAGCGCCATGTACAAGGTCCTGTCAAAGACACGTACCTGATCTGAAGTACAATGACATTCCCTGCCTTCTTAAACCTCCCAAAGGGCTCAACACTACTGAGTGAGGTCCTATGTATTGACTCCCCTCCTGAATaggcctgggtgccagtctgtttagctatcaTTCACTCCTTGCCACTGCTGTCATGCTAAACATTGGCATATGACAGAGTACAAGGAGTGAAATGTTAGCGAAACAGCCCGGCAATCAGGCTAGAATAGGCCCAAAATtgattcattattttattttcaccTTTGAGAACTGTACATATGTTTTGTCTTGGTCTTTTTAATTGTGTAGGTCCTTCTGTTCAAAATGCATGAATACTCAGTCGATTTAGCATTTTCGTAGTTTTCTATGTGTATAATTGGTCTGTGTGTAATCTCACTAATAAATACATAATTATGAACATGA
>XM_021597708.2
TTCTTCGGTCTTGAGAGTCCTGAATAAACCTACTTCCGTTAGGTTCCGGATGTGGCGCCAAATTTGAAAAATATTCCTGTTTCAATTTATATGAACGTAAACAGACAGCGAAAATTGACGTTGAAGATAATACTACTTTTAGAAACATATCTGCAAACAAATGGACTCGTCGGCACGTTTTTTCACTAAGTTGCGAAACCTAGCCGTGAATTTGGAGACCGAAACTGCCAGTCTTCAACAGGCACACCAGAACTACGACGATGAAGATCATAGCACTGAGAGTGCAGTGGGAGTTCTGCAAGAGCTGCACTCCGAGGTCAGGGGACTCAAGGGCCAGGTGAAGGAGCAGCTGGTGCGCCAGCAGGCAGGGGAGAATGATTTGAGGAGCTTTATAAAGATGTGTATGGTGCTGAAGCAGAGGACCACAGAGGACATCCAGAGACTGATGAGACACTATGAAAAATATGGCTACAGAGCGCCTAAGAGCACACAGAAACAGTCAGAGTCGAGCGGCCAGGAGGCAGAAGCTTCAGAGAAAGAGGACGAGGGTGAGaccgagggaggagaggaggaccaggagaaaggagagggatacCTCACCTCAGTGACCCCTCTGAAGATGCCCCCTCCGCCCTTCATTGACCCCTTGCGCACCCCCCAGCTCTCTGACTTCGGCCTGTCGGAGATCCACCTGAAGAGGGTGTTGGGTGGCACAGTGTTTTCCAGCGCTGAGGCCCCCATGCCCATGATGACCCTCCCTCTGCCGTCTCTAGTCCTAGCCATGCAGCCACCCATGCCCAAAACGCCCAAGTGCACCTTGCGTATGGACGAAGATGACGACCTCCTGACCCCCCGCATGGTCGACTTTGGCCTCACGGAACACACTGTGTGTCTCAACAATGACTTCACCATGGACCTGCAGCGCAAGAAGCCCACAAAGCCTCTCAGCTCAGCAGTGTCCTTGGGCTTGGGAGTAATGTCACAGAGACCGGCACATGTCCTCTCCACTCCACCATCAAACTCCATGATGTACAGCCTGGCTACCATGGAGTCCCCCGAGCCGCCTGTATTTTGCACCCCAGGTCTGAAGATAACAAAGTCTCAGCGACACGCTCTGTCCCCTCCTCTGCAGGGAGAGATTGACCCAGAGTCCCCCTGTCGCCTTGGCAACCACCAAGCCACCCCTGAGGTCCCAGCATTTGAGACACCATACATCAACAGACTCCTTAGCACCAGAAAGGGTGAGAGAAACACACAGGCAGATGAAGACCAAGATCACTCAGAACTTCCAACCTCCAATAGAGGCTCCAGTCAAGCCTGGTCATATAATGTGTCAGAGATATCAATCATTGGATGTACAGAGGAAAAACTTACACCAGAGATGCCAAGCCTAGAGTCTTTTCTGGGCAGCTCTCTACCCTATAGGGGTGGCGGTGGAACCAGTGGAGAGCAGACTATGGGGTCAGGAgagccccctctctctttcctggaTCAGGATGGTCCCACCCAGACATTCAACCTGGGGACCCCACGGGTCAGAGGGGACTACCCCGAGCCATCCACCCCTGAGATGCCGGACCTAAGCTCTGTCACACAGGACATCTTTAAGCTTATTTCCCAGAGCAAGAAGCTCCCCACAGCAGTAGTTCAGCCACACCTCAAGCTTTCAACCCTCCACACTGCAACAGGGAAAGAGAACAGGGCTCAGAGTCTGGCTGTGGTGTCCGAGAGGGAGTTCCTCAGTCTTCCAAGCTATCTGAGACAGATTCCACTGTCCAGCCTCAACCAGGCCATTCAGAAGATCAACGGTGCCAAAGAGGAGCGAGGCCACAGTGGTGATGCGGGCCCTGCATGGTTTCTGATGGAGGAGCTGAAGAGGATCACTGGGGTGGGCACCAAGGCCCCCATGTACTTCCTGTGTCTGACTGAGTTAAAGAGGCTGGAGCATGTGCAGGGAGTAGGAACCAGCGCCATGTACAAGGTCCTGTCAAAGACACGTACCTGATCTGAAGTACAATGACATTCCCTGCCTTCTTAAACCTCCCAAAGGGCTCAACACTACTGAGTGAGGTCCTATGTATTGACTCCCCTCCTGAATaggcctgggtgccagtctgtttagctatcaTTCACTCCTTGCCACTGCTGTCATGCTAAACATTGGCATATGACAGAGTACAAGGAGTGAAATGTTAGCGAAACAGCCCGGCAATCAGGCTAGAATAGGCCCAAAATtgattcattattttattttcaccTTTGAGAACTGTACATATGTTTTGTCTTGGTCTTTTTAATTGTGTAGGTCCTTCTGTTCAAAATGCATGAATACTCAGTCGATTTAGCATTTTCGTAGTTTTCTATGTGTATAATTGGTCTGTGTGTAATCTCACTAATAAATACATAATTATGAACATGA

Function

symbol description
ska3 Predicted to be involved in chromosome segregation; mitotic cell cycle; and regulation of microtubule polymerization or depolymerization. Predicted to act upstream of or within cell division. Predicted to be located in kinetochore. Predicted to be part of outer kinetochore. Predicted to be active in spindle microtubule. Orthologous to human SKA3 (spindle and kinetochore associated complex subunit 3).

NR:

description
spindle and kinetochore-associated protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974951.1 False 2097 mRNA 0.51 8 65472285 65475542
XM_021597708.2 True 2419 mRNA 0.51 10 65472285 65476510

Neighbor

gene id symbol gene type direction distance location
LOC110520406 LOC106586596 coding downstream 13285 65437563 ~ 65459000 (-)
xpo4 xpo4 coding downstream 40132 65392849 ~ 65432153 (-)
eef1akmt1 eef1akmt1 coding downstream 81954 65387523 ~ 65390331 (-)
cryl1 NA coding downstream 109684 65330832 ~ 65362601 (-)
gjb8 cxb6 coding downstream 141756 65326162 ~ 65330529 (-)
hcn5 LOC106586566 coding upstream 3630 65480140 ~ 65484785 (-)
LOC118944602 NA coding upstream 9374 65485884 ~ 65486801 (-)
pla1a pla1a coding upstream 27475 65503985 ~ 65508384 (-)
hsd3b1 LOC106586600 coding upstream 34088 65510598 ~ 65512345 (-)
LOC110520412 LOC106586598 coding upstream 43704 65520214 ~ 65535280 (-)
G287043 NA non-coding downstream 23868 65448068 ~ 65448417 (-)
G287041 NA non-coding downstream 25983 65446079 ~ 65446302 (-)
G287005 NA non-coding downstream 132390 65338173 ~ 65339895 (-)
G286979 NA non-coding downstream 167787 65290732 ~ 65304498 (-)
G286986 NA non-coding downstream 171361 65300694 ~ 65300924 (-)
G287067 NA non-coding upstream 50438 65526948 ~ 65532451 (-)
G287081 NA non-coding upstream 78020 65554530 ~ 65554731 (-)
G287083 NA non-coding upstream 79917 65556427 ~ 65556658 (-)
G287097 NA non-coding upstream 91510 65568020 ~ 65568248 (-)
G287110 NA non-coding upstream 102762 65579272 ~ 65579563 (-)
G287042 NA other downstream 25002 65446825 ~ 65447283 (-)
G286985 LOC106586592 other downstream 171868 65298207 ~ 65300417 (-)
G286953 LOC107579696 other downstream 236377 65235180 ~ 65235908 (-)
G286638 NA other downstream 396300 65054700 ~ 65075985 (-)
G286580 marco other downstream 442549 65014259 ~ 65029736 (-)
G287112 NA other upstream 103281 65579791 ~ 65580495 (-)
G288578 NA other upstream 1366161 66842671 ~ 66842881 (-)
G289678 NA other upstream 2150322 67626832 ~ 67633493 (-)
G289653 LOC106607871 other upstream 2407242 67883752 ~ 67886232 (-)
si:ch211-214p13.7 NA other upstream 2730080 68206330 ~ 68208674 (-)

Expression


Co-expression Network