hcn5 (LOC106586566)


Basic Information

Item Value
gene id hcn5
gene name LOC106586566
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65480140 ~ 65484785 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597709.2
ggaaagtcTGGCAGCCGCTCTCCTCCCACCACACCGCCTCAATAAGCCCCGTCCACAGGAGCTGTGATGGAAAATTACCCTGTGACCAAAAAGACAGGTCAGTTTAGAGCAAAGTTAGACTCGACTCTTCAGCAGCCCAGAGAAGGATGGCCAGCGCAGTCAGCTGAACAGAATAACCGTGTGCTCCTTCTGGCATGGAAAACTCCCAAGCCCCTGTCGGCAGGCGCACAGCCAGCACCTGTGGTTGGAAAGCTGTATTTCTGCCTCAGCTGAACAGGCAGTCTCTATCTGTGTACGGCAGCGAGATAGCTGTGGAGAAGGAATGTATACGCCAGCTGCAGAGTGGAGTCTGGGTCATCCACCCATTCAGCCCCATAAGGAGttactacatcatgtgtatgGTTGCCATCACATTCCTGAATTTGATTGGGATCCCCATGGAGATAGCTTTCTTAGACGGGTACAGTGGAGTGGGCTGGGAAGGTTTCAATGTCTTCTCAGACACTCTGTTTCTGATGGATGTGGCTCTGAATTTTCGCATGGGTATCATCTCTGAGGACAGTGAGGTGGCTATACTGGATATCAAAAAGATCCGTGTGATTTACCTAAAGAGTTGGTTCATACCAGATGTGATTGCAGCATTCCCAATTGGCTACATACTATTAATTGCGGAGTTACAATCCCACAGTGACACCTCCACCTCAGGTTCCAAAGCCAGTAGAATGGTGCGGATCCTCATGTTTGTCCGAATCATCAGCCTCGTCAGGCTCCTCAGAGTCTCCAGGCTTGTCCGCTTCTTCAATGAAGTTGAAAAGGTTTCAAATGCCAACTTGGAGTATGTTCAGCTGTTCTTCCGCATACTGTCTTTGTTTATGATGATGTTTCTGCTGTGCCACTGGAACGGCTGTATCCAGTACTTTGTCCCGATGCTGGAGGAGTTCCCATCTGACTGCTGGGTCAGACAAGAGAAGCTGATGAATGCCACGGTCGGTGAGAAGTATTCCTTTGGAGTGTTTCGTGCTCTCTCTCATATGATCCAAATTTCCTATGGCTCCAACGAGTCACCAACAAATGAGGTGGAGCTGTGGGTGGTCATGACCAGTATGCTGTCTGGGGCTCTAATGTACACTGTACTGGTGGCCAACGCTGCTGCCATCATAACCAACGTAGACCAAGCAGCAAAGGCCTACAAAGACAAGATGAATCATCTAGACGACTACATGACCTTCTTGAAGCTTCCTAACGACCTTCGACTTCGAATCCAGAAGTACTACGGGGCCCGATATGGGGGGAGATGGTTTGACGAAAAGAACTTTCTAATTTCAGTCTCCTCAGCTTTGAGAGAGGAGATTCTGACAGTGATGTGTTTGAGCCTGCTGAACAACGTACCCATGTTCCAGAACCGAGACGTCAACTTCCTGAACACCGTTCTCCTCCAGTTTCAGCATGAAGTCTTccaagaggatgatgtcatcttCCAACAGAATGCACCCGGAGACCGCATGTTCTTCATCGAGCACGGCCAGGTCCTGGTGGAGACAGACTCCTTCTCGCAGGAACTGGCTGATGGAGACTACTTTGGAGAGACCTGCCTCATGACCAAAGGAAAGCGTTTGGCCACGGTTCAAGCTCTGACCACCTGCCAGCTCTTCTCCCTGTCCTCAGAACGCTTCCAGATGGTTCTACAGGGCTTCCCTGATATCAGGAGAGACATGGAAAAGTTTTCACAGCAGGACAAGGAATATGTGCGACATCTCTAGTACAGTGCGGCCATTTATCAACAGTAGTGGTCACTAAGCCTGGTTCTGCAGAGGTACAGGATGTGCAGGCTtatgttccagcccagcactaacacatctTATTCTGTTCGTAGAATTAGGTGTTTTAGTCCTGTGCAGCCTGGAGCTCTCCATGACCAGGATTTGTGACCACTTATGTATTGTGTAGCTCAGACTTGGTATTGTGTAGACTGGTCTAAAATTGTATTATACTTTATATATATAAAGATTTCCTTGTTATTTATTTGTTAAACTGTGCATCATACAACCCTTAGTCTGGATTACTAATAGTTATACTCTAGATCCTCTCTGGGTGGATCCAAAACAGTATATGATATTGTTGCTTTAAGGAAGAGTGTATTTCGGGACATGtaatgctaaaaaaaaaaagggttttgaaaatgtatttattgtgaagAAATAGTATTAgaactgttttttgtttttcaaatttCCTTTATTGTGAAGAAATGTCAATGACATAATACAAGGGCAATTTGGTTATGAAACTACCAGTATGAAACAGCAGAAATAAAGAGGAAAACATGGTTTCAGTTGA

Function

NR:

description
potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597709.2 True 2337 mRNA 0.46 10 65480140 65484785

Neighbor

gene id symbol gene type direction distance location
ska3 ska3 coding downstream 3630 65472285 ~ 65476510 (-)
LOC110520406 LOC106586596 coding downstream 21140 65437563 ~ 65459000 (-)
xpo4 xpo4 coding downstream 47987 65392849 ~ 65432153 (-)
eef1akmt1 eef1akmt1 coding downstream 89809 65387523 ~ 65390331 (-)
cryl1 NA coding downstream 117539 65330832 ~ 65362601 (-)
LOC118944602 NA coding upstream 1099 65485884 ~ 65486801 (-)
pla1a pla1a coding upstream 19200 65503985 ~ 65508384 (-)
hsd3b1 LOC106586600 coding upstream 25813 65510598 ~ 65512345 (-)
LOC110520412 LOC106586598 coding upstream 35429 65520214 ~ 65535280 (-)
LOC110520413 LOC106586602 coding upstream 51029 65535814 ~ 65549415 (-)
G287043 NA non-coding downstream 31723 65448068 ~ 65448417 (-)
G287041 NA non-coding downstream 33838 65446079 ~ 65446302 (-)
G287005 NA non-coding downstream 140245 65338173 ~ 65339895 (-)
G286979 NA non-coding downstream 175642 65290732 ~ 65304498 (-)
G287067 NA non-coding upstream 42163 65526948 ~ 65532451 (-)
G287081 NA non-coding upstream 69745 65554530 ~ 65554731 (-)
G287083 NA non-coding upstream 71642 65556427 ~ 65556658 (-)
G287097 NA non-coding upstream 83235 65568020 ~ 65568248 (-)
G287110 NA non-coding upstream 94487 65579272 ~ 65579563 (-)
G287042 NA other downstream 32857 65446825 ~ 65447283 (-)
G286985 LOC106586592 other downstream 179723 65298207 ~ 65300417 (-)
G286953 LOC107579696 other downstream 244232 65235180 ~ 65235908 (-)
G286638 NA other downstream 404155 65054700 ~ 65075985 (-)
G286580 marco other downstream 450404 65014259 ~ 65029736 (-)
G287112 NA other upstream 95006 65579791 ~ 65580495 (-)
G288578 NA other upstream 1357886 66842671 ~ 66842881 (-)
G289678 NA other upstream 2142047 67626832 ~ 67633493 (-)
G289653 LOC106607871 other upstream 2398967 67883752 ~ 67886232 (-)
si:ch211-214p13.7 NA other upstream 2721805 68206330 ~ 68208674 (-)

Expression


Co-expression Network